Wall clock time and date at job start Tue Mar 31 2020 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.88558 * 2 1 4 4 C 1.54910 * 111.00118 * 123.87907 * 2 1 3 5 5 N 1.47424 * 104.83040 * 155.08471 * 4 2 1 6 6 C 1.34777 * 125.64899 * 155.83800 * 5 4 2 7 7 O 1.21579 * 119.99978 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99908 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99635 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46828 * 299.99604 * 10 9 8 12 12 C 1.53003 * 109.47482 * 59.99704 * 10 9 8 13 13 C 1.52997 * 109.47535 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47471 * 179.97438 * 13 10 9 15 15 H 1.08002 * 119.99869 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99922 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00388 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47195 * 89.99983 * 18 16 14 20 20 H 1.48499 * 109.47159 * 209.99893 * 18 16 14 21 21 H 1.48498 * 109.47267 * 329.99963 * 18 16 14 22 22 C 1.47024 * 108.70266 * 336.09757 * 5 4 2 23 23 C 1.54316 * 107.27773 * 0.70728 * 22 5 4 24 24 H 1.09005 * 111.07167 * 264.04039 * 23 22 5 25 25 C 1.52992 * 110.59342 * 140.78498 * 23 22 5 26 26 H 1.09001 * 109.47224 * 297.57032 * 1 2 3 27 27 H 1.08997 * 109.47112 * 57.57503 * 1 2 3 28 28 H 1.09002 * 109.47146 * 177.57277 * 1 2 3 29 29 H 1.09002 * 110.36816 * 36.25156 * 4 2 1 30 30 H 1.08999 * 110.46485 * 273.96902 * 4 2 1 31 31 H 0.96995 * 120.00015 * 359.72369 * 8 6 5 32 32 H 1.09005 * 109.47306 * 299.99972 * 9 8 6 33 33 H 1.09002 * 109.47518 * 60.00210 * 9 8 6 34 34 H 1.09005 * 109.46707 * 60.00379 * 11 10 9 35 35 H 1.08998 * 109.47134 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47484 * 300.00633 * 11 10 9 37 37 H 1.08997 * 109.46624 * 60.00330 * 12 10 9 38 38 H 1.08998 * 109.46996 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.46790 * 300.00407 * 12 10 9 40 40 H 1.09005 * 109.46889 * 299.99675 * 13 10 9 41 41 H 1.09004 * 109.47073 * 59.99170 * 13 10 9 42 42 H 0.96998 * 120.00131 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.88097 * 120.25007 * 22 5 4 44 44 H 1.09003 * 109.88363 * 241.41170 * 22 5 4 45 45 H 1.09005 * 109.47093 * 306.64600 * 25 23 22 46 46 H 1.08998 * 109.47323 * 66.64663 * 25 23 22 47 47 H 1.08998 * 109.47115 * 186.64996 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 1.2007 5 7 3.4271 -1.2428 0.7739 6 6 4.4480 -1.5597 1.5947 7 8 4.3012 -1.4961 2.7999 8 7 5.6316 -1.9472 1.0794 9 6 6.7414 -2.2912 1.9716 10 6 7.9598 -2.6937 1.1383 11 6 7.6077 -3.9048 0.2721 12 6 8.3712 -1.5260 0.2393 13 6 9.1188 -3.0535 2.0700 14 6 10.3186 -3.4506 1.2492 15 1 10.2603 -3.4470 0.1708 16 6 11.4909 -3.8183 1.8750 17 7 11.5618 -3.8231 3.1882 18 14 12.9779 -4.3111 0.8575 19 1 13.8004 -3.1090 0.5686 20 1 13.7908 -5.2968 1.6143 21 1 12.5247 -4.9193 -0.4191 22 6 3.4691 -1.2692 -0.6955 23 6 2.0861 -0.8084 -1.2019 24 1 1.4451 -1.6620 -1.4223 25 6 2.2350 0.0866 -2.4338 26 1 -0.3634 0.4756 0.9110 27 1 -0.3633 0.5510 -0.8674 28 1 -0.3633 -1.0268 -0.0435 29 1 1.4518 -1.6699 1.4031 30 1 2.1558 -0.1728 2.0850 31 1 5.7474 -2.0019 0.1180 32 1 6.9926 -1.4283 2.5885 33 1 6.4483 -3.1229 2.6124 34 1 6.7819 -3.6488 -0.3918 35 1 8.4755 -4.1913 -0.3219 36 1 7.3145 -4.7366 0.9125 37 1 8.6221 -0.6633 0.8564 38 1 9.2389 -1.8129 -0.3547 39 1 7.5454 -1.2701 -0.4245 40 1 9.3698 -2.1910 2.6875 41 1 8.8254 -3.8856 2.7102 42 1 12.3866 -4.0815 3.6284 43 1 4.2427 -0.5915 -1.0564 44 1 3.6700 -2.2828 -1.0425 45 1 2.9227 0.9021 -2.2095 46 1 2.6264 -0.5007 -3.2645 47 1 1.2620 0.4962 -2.7050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358706249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:10 Heat of formation + Delta-G solvation = -57.248591 kcal Electronic energy + Delta-G solvation = -22995.839565 eV Core-core repulsion = 19791.522965 eV Total energy + Delta-G solvation = -3204.316600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34058 -38.43332 -36.93002 -33.74214 -33.16040 -32.00159 -31.50939 -27.40726 -26.85714 -26.56975 -26.48962 -25.35421 -22.90904 -22.04536 -20.40388 -19.79227 -18.61019 -17.44248 -16.56090 -16.23945 -15.58603 -14.97567 -14.61224 -14.49240 -14.20001 -14.03033 -13.85569 -13.33072 -13.04563 -12.92659 -12.88734 -12.71935 -12.46603 -12.14783 -12.12388 -12.04244 -11.85372 -11.16204 -11.12723 -11.04616 -10.99837 -10.83980 -10.68578 -10.61807 -10.37145 -10.23268 -9.97794 -9.85128 -9.18203 -8.90799 -8.85488 -8.38359 -8.34304 -5.98330 -3.99588 2.74205 3.31733 3.38723 3.40467 3.41746 4.02828 4.21635 4.34180 4.43799 4.47487 4.90136 5.01179 5.06674 5.12345 5.25290 5.31664 5.37125 5.37622 5.52486 5.53781 5.59212 5.65964 5.67235 5.68020 5.77792 5.82091 5.87605 6.03645 6.15422 6.20288 6.27708 6.35574 6.44281 6.63116 6.65018 6.84579 7.08705 7.09607 7.14866 7.20098 7.66510 7.79074 8.00475 8.17505 8.42432 8.82194 9.05233 9.63361 11.13179 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035449 B = 0.003173 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.683675 B = 8821.067568 C = 9350.101761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.130 3.870 5 N -0.642 5.642 6 C 0.717 3.283 7 O -0.592 6.592 8 N -0.734 5.734 9 C 0.146 3.854 10 C -0.072 4.072 11 C -0.126 4.126 12 C -0.125 4.125 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.103 3.897 23 C -0.098 4.098 24 H 0.086 0.914 25 C -0.142 4.142 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.393 0.607 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 7.138 -11.494 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 H 0.103 0.897 4 C 0.006 3.994 5 N -0.381 5.381 6 C 0.419 3.581 7 O -0.470 6.470 8 N -0.390 5.390 9 C 0.023 3.977 10 C -0.073 4.073 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.001 4.001 14 C -0.549 4.549 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.021 4.021 23 C -0.117 4.117 24 H 0.104 0.896 25 C -0.200 4.200 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.228 0.772 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.652 7.102 -10.372 24.177 hybrid contribution 1.027 -0.364 -0.944 1.442 sum -19.625 6.738 -11.316 23.634 Atomic orbital electron populations 1.21684 0.93703 1.02216 1.02124 1.22463 0.96148 0.99456 0.94203 0.89671 1.22083 0.82051 0.97861 0.97358 1.47537 1.12280 1.72507 1.05801 1.15536 0.79735 0.78293 0.84513 1.90912 1.82572 1.60986 1.12576 1.45376 1.11233 1.71937 1.10407 1.21503 0.84365 0.99997 0.91856 1.20915 0.94730 0.94963 0.96667 1.21750 0.99934 0.97615 0.98990 1.21744 1.00022 0.97664 0.98841 1.19089 0.90503 0.96859 0.93677 1.21182 0.96106 1.44640 0.92952 0.92273 1.25014 0.98776 0.95918 0.94808 1.69965 1.27044 1.48618 1.07760 0.86650 0.83113 0.78317 0.80229 1.20792 1.21348 1.19961 1.22072 0.98044 1.01130 0.80837 1.22260 0.95502 0.98792 0.95142 0.89586 1.21765 1.02116 0.99380 0.96717 0.92181 0.92159 0.92309 0.91879 0.90520 0.77155 0.92007 0.92018 0.95436 0.91461 0.93352 0.93357 0.91478 0.95420 0.96300 0.96290 0.93044 0.91564 0.91753 0.92270 0.92212 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.29 37.16 0.35 -0.45 16 2 C -0.10 -0.77 3.08 -88.47 -0.27 -1.05 16 3 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 4 C 0.13 1.40 6.38 -2.53 -0.02 1.38 16 5 N -0.64 -8.27 3.33 -176.24 -0.59 -8.86 16 6 C 0.72 12.20 8.49 -86.91 -0.74 11.46 16 7 O -0.59 -12.51 16.60 5.30 0.09 -12.42 16 8 N -0.73 -11.73 4.92 -65.23 -0.32 -12.05 16 9 C 0.15 2.74 4.56 -4.04 -0.02 2.72 16 10 C -0.07 -1.40 0.54 -154.50 -0.08 -1.49 16 11 C -0.13 -2.25 8.05 37.16 0.30 -1.96 16 12 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 13 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 14 C -0.51 -13.64 7.65 -34.44 -0.26 -13.90 16 15 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.10 0.96 5.73 -3.07 -0.02 0.94 16 23 C -0.10 -0.68 3.03 -88.79 -0.27 -0.95 16 24 H 0.09 0.56 8.01 -51.93 -0.42 0.14 16 25 C -0.14 -0.81 9.16 37.15 0.34 -0.47 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 29 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 30 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 31 H 0.39 5.41 5.15 -40.82 -0.21 5.20 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 39 H 0.03 0.41 6.87 -51.93 -0.36 0.05 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 43 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -31.89 364.20 -8.82 -40.72 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.60 Total: 0.18 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.60 Total: -3.45 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.17 Total: -46.78 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.89 -8.82 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.532 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds