Wall clock time and date at job start Tue Mar 31 2020 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.88558 * 2 1 4 4 C 1.54910 * 111.00118 * 123.87907 * 2 1 3 5 5 N 1.47424 * 104.83040 * 155.08471 * 4 2 1 6 6 C 1.34777 * 125.64899 * 155.83800 * 5 4 2 7 7 O 1.21579 * 119.99978 * 359.97438 * 6 5 4 8 8 N 1.34784 * 119.99908 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99635 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46828 * 299.99604 * 10 9 8 12 12 C 1.53003 * 109.47482 * 59.99704 * 10 9 8 13 13 C 1.52997 * 109.47535 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47471 * 179.97438 * 13 10 9 15 15 H 1.08002 * 119.99869 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99922 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00388 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99824 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47195 * 89.99983 * 18 16 14 20 20 H 1.48499 * 109.47159 * 209.99893 * 18 16 14 21 21 H 1.48498 * 109.47267 * 329.99963 * 18 16 14 22 22 C 1.47024 * 108.70266 * 336.09757 * 5 4 2 23 23 C 1.54316 * 107.27773 * 0.70728 * 22 5 4 24 24 H 1.09005 * 111.07167 * 264.04039 * 23 22 5 25 25 C 1.52992 * 110.59342 * 140.78498 * 23 22 5 26 26 H 1.09001 * 109.47224 * 297.57032 * 1 2 3 27 27 H 1.08997 * 109.47112 * 57.57503 * 1 2 3 28 28 H 1.09002 * 109.47146 * 177.57277 * 1 2 3 29 29 H 1.09002 * 110.36816 * 36.25156 * 4 2 1 30 30 H 1.08999 * 110.46485 * 273.96902 * 4 2 1 31 31 H 0.96995 * 120.00015 * 359.72369 * 8 6 5 32 32 H 1.09005 * 109.47306 * 299.99972 * 9 8 6 33 33 H 1.09002 * 109.47518 * 60.00210 * 9 8 6 34 34 H 1.09005 * 109.46707 * 60.00379 * 11 10 9 35 35 H 1.08998 * 109.47134 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47484 * 300.00633 * 11 10 9 37 37 H 1.08997 * 109.46624 * 60.00330 * 12 10 9 38 38 H 1.08998 * 109.46996 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.46790 * 300.00407 * 12 10 9 40 40 H 1.09005 * 109.46889 * 299.99675 * 13 10 9 41 41 H 1.09004 * 109.47073 * 59.99170 * 13 10 9 42 42 H 0.96998 * 120.00131 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.88097 * 120.25007 * 22 5 4 44 44 H 1.09003 * 109.88363 * 241.41170 * 22 5 4 45 45 H 1.09005 * 109.47093 * 306.64600 * 25 23 22 46 46 H 1.08998 * 109.47323 * 66.64663 * 25 23 22 47 47 H 1.08998 * 109.47115 * 186.64996 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 1.2007 5 7 3.4271 -1.2428 0.7739 6 6 4.4480 -1.5597 1.5947 7 8 4.3012 -1.4961 2.7999 8 7 5.6316 -1.9472 1.0794 9 6 6.7414 -2.2912 1.9716 10 6 7.9598 -2.6937 1.1383 11 6 7.6077 -3.9048 0.2721 12 6 8.3712 -1.5260 0.2393 13 6 9.1188 -3.0535 2.0700 14 6 10.3186 -3.4506 1.2492 15 1 10.2603 -3.4470 0.1708 16 6 11.4909 -3.8183 1.8750 17 7 11.5618 -3.8231 3.1882 18 14 12.9779 -4.3111 0.8575 19 1 13.8004 -3.1090 0.5686 20 1 13.7908 -5.2968 1.6143 21 1 12.5247 -4.9193 -0.4191 22 6 3.4691 -1.2692 -0.6955 23 6 2.0861 -0.8084 -1.2019 24 1 1.4451 -1.6620 -1.4223 25 6 2.2350 0.0866 -2.4338 26 1 -0.3634 0.4756 0.9110 27 1 -0.3633 0.5510 -0.8674 28 1 -0.3633 -1.0268 -0.0435 29 1 1.4518 -1.6699 1.4031 30 1 2.1558 -0.1728 2.0850 31 1 5.7474 -2.0019 0.1180 32 1 6.9926 -1.4283 2.5885 33 1 6.4483 -3.1229 2.6124 34 1 6.7819 -3.6488 -0.3918 35 1 8.4755 -4.1913 -0.3219 36 1 7.3145 -4.7366 0.9125 37 1 8.6221 -0.6633 0.8564 38 1 9.2389 -1.8129 -0.3547 39 1 7.5454 -1.2701 -0.4245 40 1 9.3698 -2.1910 2.6875 41 1 8.8254 -3.8856 2.7102 42 1 12.3866 -4.0815 3.6284 43 1 4.2427 -0.5915 -1.0564 44 1 3.6700 -2.2828 -1.0425 45 1 2.9227 0.9021 -2.2095 46 1 2.6264 -0.5007 -3.2645 47 1 1.2620 0.4962 -2.7050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358706249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:10 Heat of formation + Delta-G solvation = -76.266654 kcal Electronic energy + Delta-G solvation = -22996.664250 eV Core-core repulsion = 19791.522965 eV Total energy + Delta-G solvation = -3205.141285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47567 -39.55647 -38.43120 -35.30109 -34.43748 -33.61606 -32.14848 -29.17438 -28.20489 -27.97533 -27.23745 -26.61653 -24.70489 -22.94363 -21.14113 -20.92309 -20.03861 -18.80593 -18.35727 -17.50431 -16.90231 -16.48851 -16.05327 -15.64648 -15.35019 -15.05770 -14.81944 -14.68125 -14.35968 -14.23813 -13.94501 -13.82976 -13.60666 -13.52776 -13.01875 -12.87151 -12.76628 -12.71425 -12.60082 -12.42723 -12.34434 -12.22663 -11.97684 -11.78096 -11.63018 -11.54815 -11.38412 -11.24880 -10.99104 -10.86066 -10.50819 -10.24202 -9.50415 -8.13218 -6.21269 1.43148 1.43853 1.54018 1.58366 2.08581 2.44894 3.01720 3.21248 3.54638 3.57975 3.84774 3.95932 4.07651 4.21215 4.25354 4.37257 4.54133 4.55730 4.65623 4.66465 4.69404 4.71415 4.75745 4.82361 4.89019 4.95160 5.01896 5.09271 5.11352 5.14922 5.20607 5.24103 5.28986 5.38130 5.46991 5.48292 5.49302 5.52563 5.53598 5.58269 5.79821 5.90141 6.03757 6.31035 6.92743 6.96374 7.46446 7.51623 8.99512 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035449 B = 0.003173 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.683675 B = 8821.067568 C = 9350.101761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.083 0.917 4 C 0.121 3.879 5 N -0.638 5.638 6 C 0.711 3.289 7 O -0.642 6.642 8 N -0.721 5.721 9 C 0.161 3.839 10 C -0.063 4.063 11 C -0.119 4.119 12 C -0.119 4.119 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.074 0.926 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.258 1.258 22 C 0.093 3.907 23 C -0.089 4.089 24 H 0.097 0.903 25 C -0.139 4.139 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.408 0.592 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.066 0.934 40 H -0.014 1.014 41 H -0.014 1.014 42 H 0.259 0.741 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.093 7.456 -15.223 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.102 0.898 4 C -0.002 4.002 5 N -0.376 5.376 6 C 0.413 3.587 7 O -0.524 6.524 8 N -0.378 5.378 9 C 0.036 3.964 10 C -0.064 4.064 11 C -0.177 4.177 12 C -0.177 4.177 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.203 4.203 17 N -0.581 5.581 18 Si 0.785 3.215 19 H -0.201 1.201 20 H -0.216 1.216 21 H -0.182 1.182 22 C -0.029 4.029 23 C -0.108 4.108 24 H 0.116 0.884 25 C -0.196 4.196 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.245 0.755 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.004 0.996 41 H 0.004 0.996 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.006 7.433 -14.184 27.215 hybrid contribution 1.352 -0.437 0.252 1.443 sum -20.654 6.995 -13.932 25.877 Atomic orbital electron populations 1.21673 0.92028 1.02788 1.02851 1.22423 0.97339 0.98768 0.92681 0.89819 1.22307 0.81271 0.98232 0.98378 1.47595 1.11801 1.70885 1.07302 1.15722 0.80488 0.78263 0.84273 1.90875 1.83510 1.63021 1.15037 1.45021 1.10346 1.71816 1.10574 1.21090 0.85056 0.98455 0.91820 1.20714 0.92824 0.96735 0.96125 1.21674 1.00954 0.96225 0.98813 1.21671 1.01153 0.96202 0.98633 1.18967 0.92639 0.94229 0.93901 1.21584 0.96390 1.43341 0.93756 0.90785 1.25966 1.02280 0.96186 0.95844 1.70127 1.27890 1.50240 1.09815 0.85522 0.79075 0.77961 0.78946 1.20143 1.21631 1.18216 1.22405 1.00044 1.02171 0.78286 1.22268 0.93974 0.99301 0.95234 0.88435 1.21748 1.02817 0.98998 0.96047 0.92286 0.90563 0.91899 0.91515 0.92561 0.75463 0.93955 0.93953 0.91534 0.92289 0.94467 0.94481 0.92255 0.91532 0.99587 0.99568 0.93177 0.90785 0.90709 0.92724 0.91402 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.29 71.98 0.67 -0.51 16 2 C -0.09 -1.18 3.08 -9.40 -0.03 -1.21 16 3 H 0.08 1.12 8.05 -2.39 -0.02 1.10 16 4 C 0.12 2.51 6.38 86.86 0.55 3.06 16 5 N -0.64 -15.69 3.33 -829.77 -2.76 -18.45 16 6 C 0.71 24.08 8.49 179.05 1.52 25.60 16 7 O -0.64 -28.05 16.60 -3.96 -0.07 -28.11 16 8 N -0.72 -22.36 4.92 -478.53 -2.35 -24.72 16 9 C 0.16 6.15 4.56 86.38 0.39 6.55 16 10 C -0.06 -2.47 0.54 -52.18 -0.03 -2.50 16 11 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 12 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 13 C 0.04 2.08 4.04 29.85 0.12 2.21 16 14 C -0.51 -27.62 7.65 25.60 0.20 -27.42 16 15 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 16 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 17 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 18 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 22 C 0.09 1.47 5.73 86.73 0.50 1.97 16 23 C -0.09 -0.95 3.03 -9.61 -0.03 -0.97 16 24 H 0.10 0.87 8.01 -2.38 -0.02 0.85 16 25 C -0.14 -1.05 9.16 71.98 0.66 -0.39 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.52 8.11 -2.39 -0.02 0.50 16 29 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 30 H 0.06 1.39 8.03 -2.39 -0.02 1.37 16 31 H 0.41 10.07 5.15 -92.71 -0.48 9.59 16 32 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.75 6.86 -2.38 -0.02 1.74 16 35 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 39 H 0.07 1.75 6.87 -2.39 -0.02 1.74 16 40 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 41 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 42 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.07 1.09 7.76 -2.39 -0.02 1.07 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 0.48 8.06 -2.38 -0.02 0.46 16 46 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -72.25 364.20 3.72 -68.53 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.44 Total: 14.96 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.14 Total: -0.53 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -4.83 Total: -100.56 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.07 Total: -28.11 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.25 3.72 -68.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.738 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds