Wall clock time and date at job start Tue Mar 31 2020 06:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 110.79618 * 2 1 4 4 C 1.54942 * 110.73792 * 123.29189 * 2 1 3 5 5 N 1.48119 * 103.25329 * 155.71075 * 4 2 1 6 6 C 1.34783 * 127.03093 * 140.66987 * 5 4 2 7 7 O 1.21581 * 119.99613 * 180.02562 * 6 5 4 8 8 N 1.34768 * 119.99976 * 0.04847 * 6 5 4 9 9 C 1.46500 * 120.00134 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47635 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47235 * 300.00367 * 10 9 8 12 12 C 1.53001 * 109.46700 * 59.99987 * 10 9 8 13 13 C 1.52990 * 109.47395 * 180.02562 * 10 9 8 14 14 C 1.50705 * 109.47348 * 180.02562 * 13 10 9 15 15 H 1.07997 * 119.99753 * 0.02562 * 14 13 10 16 16 C 1.37881 * 120.00026 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99569 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99992 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46899 * 90.00039 * 18 16 14 20 20 H 1.48500 * 109.46978 * 209.99971 * 18 16 14 21 21 H 1.48496 * 109.47084 * 329.99974 * 18 16 14 22 22 C 1.47490 * 105.93273 * 320.71149 * 5 4 2 23 23 C 1.53999 * 107.08258 * 25.44426 * 22 5 4 24 24 H 1.09006 * 110.32425 * 117.69370 * 23 22 5 25 25 C 1.53006 * 110.32610 * 239.80098 * 23 22 5 26 26 H 1.09000 * 109.46999 * 183.29277 * 1 2 3 27 27 H 1.09002 * 109.47295 * 303.28959 * 1 2 3 28 28 H 1.08996 * 109.47395 * 63.29117 * 1 2 3 29 29 H 1.08999 * 110.66474 * 37.27376 * 4 2 1 30 30 H 1.08996 * 110.80600 * 274.22356 * 4 2 1 31 31 H 0.97003 * 120.00108 * 359.97438 * 8 6 5 32 32 H 1.08996 * 109.46978 * 300.00258 * 9 8 6 33 33 H 1.09009 * 109.46754 * 59.99777 * 9 8 6 34 34 H 1.09010 * 109.47491 * 59.99521 * 11 10 9 35 35 H 1.09001 * 109.47189 * 179.97438 * 11 10 9 36 36 H 1.09007 * 109.47527 * 299.99795 * 11 10 9 37 37 H 1.09000 * 109.47227 * 60.00447 * 12 10 9 38 38 H 1.09001 * 109.47126 * 180.02562 * 12 10 9 39 39 H 1.08997 * 109.47251 * 299.99542 * 12 10 9 40 40 H 1.09000 * 109.47186 * 299.99954 * 13 10 9 41 41 H 1.09003 * 109.47360 * 60.00201 * 13 10 9 42 42 H 0.97007 * 119.99547 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.91041 * 266.07949 * 22 5 4 44 44 H 1.08992 * 109.91083 * 144.80626 * 22 5 4 45 45 H 1.09001 * 109.47002 * 58.54740 * 25 23 22 46 46 H 1.08993 * 109.46955 * 178.55177 * 25 23 22 47 47 H 1.09000 * 109.47050 * 298.55006 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0787 -0.7954 1.2112 5 7 3.4279 -1.2100 0.7622 6 6 4.5538 -1.2472 1.5021 7 8 5.5996 -1.6108 0.9998 8 7 4.5203 -0.8818 2.7989 9 6 5.7440 -0.9227 3.6033 10 6 5.4332 -0.4615 5.0286 11 6 4.8926 0.9694 4.9951 12 6 4.3849 -1.3884 5.6473 13 6 6.7113 -0.5036 5.8685 14 6 6.4050 -0.0499 7.2726 15 1 5.3992 0.2392 7.5393 16 6 7.4086 -0.0049 8.2169 17 7 7.1414 0.3916 9.4420 18 14 9.1482 -0.5056 7.7557 19 1 9.8929 0.6834 7.2689 20 1 9.8344 -1.0657 8.9476 21 1 9.1000 -1.5325 6.6841 22 6 3.2874 -1.5728 -0.6605 23 6 2.0775 -0.7936 -1.2087 24 1 2.3924 -0.1128 -1.9995 25 6 1.0155 -1.7618 -1.7339 26 1 -0.3633 -1.0260 0.0590 27 1 -0.3634 0.5641 0.8590 28 1 -0.3634 0.4619 -0.9180 29 1 1.4559 -1.6669 1.4131 30 1 2.1456 -0.1594 2.0938 31 1 3.6860 -0.5916 3.1997 32 1 6.1294 -1.9420 3.6268 33 1 6.4908 -0.2620 3.1627 34 1 3.9820 0.9999 4.3966 35 1 4.6707 1.2979 6.0105 36 1 5.6394 1.6299 4.5543 37 1 4.7701 -2.4078 5.6712 38 1 4.1631 -1.0595 6.6626 39 1 3.4744 -1.3578 5.0489 40 1 7.0969 -1.5229 5.8924 41 1 7.4578 0.1570 5.4275 42 1 7.8474 0.4229 10.1065 43 1 3.1125 -2.6446 -0.7547 44 1 4.1882 -1.2917 -1.2059 45 1 0.7017 -2.4279 -0.9302 46 1 0.1557 -1.1972 -2.0945 47 1 1.4326 -2.3501 -2.5513 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358706250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:13 Heat of formation + Delta-G solvation = -47.614482 kcal Electronic energy + Delta-G solvation = -23118.061752 eV Core-core repulsion = 19914.162918 eV Total energy + Delta-G solvation = -3203.898834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42426 -38.61120 -37.06942 -33.81912 -33.27809 -32.03126 -31.08826 -27.94324 -27.24511 -26.54357 -26.34478 -25.57277 -23.22400 -22.14618 -19.89136 -19.39530 -18.69574 -17.53616 -16.80055 -16.53884 -15.77151 -15.35771 -14.63898 -14.42605 -14.25517 -14.04562 -13.71113 -13.50439 -13.45938 -12.87474 -12.72813 -12.58933 -12.44612 -12.26799 -12.19663 -12.11381 -11.95629 -11.23176 -11.12348 -11.10178 -10.99525 -10.88206 -10.72373 -10.60142 -10.45860 -10.06396 -9.95187 -9.73221 -9.50004 -8.98008 -8.97152 -8.52371 -8.47287 -6.03200 -4.00294 2.65785 3.33098 3.34273 3.40992 3.45728 4.03308 4.16226 4.33372 4.47159 4.49691 4.79816 5.00156 5.10607 5.10924 5.16249 5.28671 5.29766 5.40539 5.42239 5.48342 5.53240 5.56677 5.63015 5.65948 5.75532 5.81757 5.86688 5.99003 6.12096 6.13774 6.16311 6.25190 6.34971 6.53294 6.61032 6.75852 6.93906 7.02647 7.06014 7.13324 7.22488 7.38867 7.79342 8.10734 8.53929 8.75114 9.00841 9.59704 11.09544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034665 B = 0.003347 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.534292 B = 8364.147176 C = 8882.852818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.082 0.918 4 C 0.105 3.895 5 N -0.644 5.644 6 C 0.722 3.278 7 O -0.593 6.593 8 N -0.735 5.735 9 C 0.144 3.856 10 C -0.063 4.063 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.002 4.002 14 C -0.510 4.510 15 H 0.078 0.922 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.129 3.871 23 C -0.103 4.103 24 H 0.082 0.918 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.394 0.606 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.262 0.738 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 -1.822 -20.281 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.019 4.019 5 N -0.383 5.383 6 C 0.424 3.576 7 O -0.471 6.471 8 N -0.390 5.390 9 C 0.021 3.979 10 C -0.063 4.063 11 C -0.185 4.185 12 C -0.184 4.184 13 C -0.040 4.040 14 C -0.548 4.548 15 H 0.096 0.904 16 C -0.134 4.134 17 N -0.544 5.544 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.189 1.189 22 C 0.006 3.994 23 C -0.123 4.123 24 H 0.101 0.899 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.230 0.770 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.136 -2.080 -20.386 24.894 hybrid contribution 0.626 -0.060 0.122 0.641 sum -13.509 -2.140 -20.264 24.448 Atomic orbital electron populations 1.21819 0.93887 1.02357 1.02016 1.22290 0.96096 0.99423 0.94298 0.89927 1.22543 0.83593 0.98353 0.97399 1.47831 1.07331 1.71491 1.11620 1.15445 0.82243 0.78651 0.81286 1.90910 1.29178 1.55070 1.71986 1.45333 1.13564 1.71252 1.08883 1.21512 0.84765 1.01286 0.90365 1.20696 0.98628 0.95281 0.91725 1.21765 0.98501 0.95884 1.02305 1.21759 0.96273 0.98983 1.01434 1.19589 0.91813 0.96896 0.95671 1.21081 0.97357 1.43936 0.92433 0.90405 1.24997 0.98748 0.94802 0.94895 1.69906 1.33263 1.48153 1.03047 0.86856 0.85298 0.79481 0.78142 1.20369 1.21527 1.18941 1.21897 0.98212 0.98617 0.80706 1.22112 0.95176 0.97400 0.97569 0.89929 1.21919 0.98377 0.98887 1.00922 0.91898 0.92394 0.92143 0.91060 0.90627 0.77009 0.92007 0.92036 0.95216 0.90897 0.93389 0.93377 0.90903 0.95177 0.96312 0.96759 0.92814 0.91902 0.90743 0.92286 0.91941 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.03 37.16 0.30 -0.46 16 2 C -0.10 -0.72 3.59 -88.75 -0.32 -1.04 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.10 0.92 6.39 -2.13 -0.01 0.91 16 5 N -0.64 -7.96 3.29 -175.48 -0.58 -8.54 16 6 C 0.72 11.80 8.54 -86.92 -0.74 11.05 16 7 O -0.59 -12.11 16.68 5.29 0.09 -12.02 16 8 N -0.73 -11.19 4.93 -65.23 -0.32 -11.51 16 9 C 0.14 2.55 4.56 -4.04 -0.02 2.53 16 10 C -0.06 -1.17 0.54 -154.52 -0.08 -1.25 16 11 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 12 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 13 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 14 C -0.51 -13.71 8.21 -34.44 -0.28 -13.99 16 15 H 0.08 2.21 5.92 -52.49 -0.31 1.89 16 16 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 18 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.13 1.34 6.62 -2.98 -0.02 1.32 16 23 C -0.10 -0.74 3.53 -89.25 -0.31 -1.06 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 C -0.14 -0.80 7.72 37.16 0.29 -0.51 16 26 H 0.06 0.31 6.60 -51.93 -0.34 -0.03 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 7.64 -51.93 -0.40 -0.11 16 29 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 30 H 0.08 0.64 6.82 -51.93 -0.35 0.29 16 31 H 0.39 5.17 4.49 -40.82 -0.18 4.98 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.03 0.43 6.86 -51.92 -0.36 0.07 16 35 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 44 H 0.07 0.86 8.05 -51.93 -0.42 0.45 16 45 H 0.06 0.34 7.45 -51.93 -0.39 -0.05 16 46 H 0.06 0.29 6.90 -51.93 -0.36 -0.07 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -32.14 354.24 -8.44 -40.59 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.28 Total: 0.44 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.79 Total: -4.73 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.13 Total: -46.61 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -8.44 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.029 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds