Wall clock time and date at job start Tue Mar 31 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.64422 * 2 1 4 4 C 1.54327 * 110.71780 * 236.86538 * 2 1 3 5 5 N 1.47031 * 107.26879 * 219.44259 * 4 2 1 6 6 C 1.34775 * 125.64581 * 178.89516 * 5 4 2 7 7 O 1.21580 * 120.00408 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99359 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99554 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47161 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.46911 * 300.00303 * 10 9 8 12 12 C 1.53004 * 109.46965 * 59.99724 * 10 9 8 13 13 C 1.52990 * 109.47172 * 180.02562 * 10 9 8 14 14 C 1.50702 * 109.47375 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99747 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00536 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99880 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47166 * 90.00252 * 18 16 14 20 20 H 1.48506 * 109.46945 * 209.99771 * 18 16 14 21 21 H 1.48493 * 109.46957 * 329.99671 * 18 16 14 22 22 C 1.47425 * 108.70103 * 358.93822 * 5 4 2 23 23 C 1.54909 * 104.83375 * 24.13170 * 22 5 4 24 24 H 1.08996 * 111.00880 * 81.05980 * 23 22 5 25 25 C 1.53000 * 111.00679 * 204.91348 * 23 22 5 26 26 H 1.08996 * 109.47374 * 181.68268 * 1 2 3 27 27 H 1.08998 * 109.47114 * 301.68600 * 1 2 3 28 28 H 1.09002 * 109.47546 * 61.68209 * 1 2 3 29 29 H 1.08998 * 109.88371 * 338.85694 * 4 2 1 30 30 H 1.08994 * 109.88463 * 100.02989 * 4 2 1 31 31 H 0.96996 * 120.00933 * 359.97438 * 8 6 5 32 32 H 1.08995 * 109.47469 * 299.99695 * 9 8 6 33 33 H 1.09001 * 109.46766 * 60.00037 * 9 8 6 34 34 H 1.09000 * 109.47038 * 59.99742 * 11 10 9 35 35 H 1.08999 * 109.46639 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46756 * 299.99595 * 11 10 9 37 37 H 1.08998 * 109.46579 * 60.00106 * 12 10 9 38 38 H 1.08999 * 109.46735 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47050 * 300.00298 * 12 10 9 40 40 H 1.09003 * 109.47085 * 299.99539 * 13 10 9 41 41 H 1.08997 * 109.47595 * 59.99730 * 13 10 9 42 42 H 0.97000 * 120.00142 * 180.02562 * 17 16 14 43 43 H 1.09000 * 110.36875 * 265.29207 * 22 5 4 44 44 H 1.09003 * 110.45479 * 143.01251 * 22 5 4 45 45 H 1.08992 * 109.47603 * 172.19085 * 25 23 22 46 46 H 1.08994 * 109.46959 * 292.19713 * 25 23 22 47 47 H 1.09008 * 109.46545 * 52.19204 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7890 -1.2087 5 7 3.2445 -1.5494 -0.7418 6 6 3.9913 -2.3821 -1.4937 7 8 3.7171 -2.5538 -2.6657 8 7 5.0421 -3.0245 -0.9463 9 6 5.8536 -3.9301 -1.7635 10 6 6.9739 -4.5240 -0.9071 11 6 7.8555 -3.3961 -0.3670 12 6 6.3650 -5.2999 0.2626 13 6 7.8217 -5.4692 -1.7606 14 6 8.9255 -6.0537 -0.9174 15 1 9.0132 -5.7788 0.1234 16 6 9.8228 -6.9402 -1.4742 17 7 9.7157 -7.2753 -2.7413 18 14 11.1905 -7.6652 -0.4286 19 1 10.7178 -8.9242 0.2011 20 1 12.3691 -7.9524 -1.2853 21 1 11.5720 -6.6953 0.6291 22 6 3.4633 -1.2510 0.6852 23 6 2.0790 -0.7976 1.2123 24 1 1.4452 -1.6561 1.4345 25 6 2.2277 0.1036 2.4397 26 1 -0.3634 -1.0272 0.0302 27 1 -0.3633 0.5398 0.8745 28 1 -0.3634 0.4875 -0.9047 29 1 1.3129 -1.4730 -1.5802 30 1 2.3740 -0.0989 -1.9979 31 1 5.2612 -2.8873 -0.0114 32 1 5.2255 -4.7333 -2.1485 33 1 6.2878 -3.3771 -2.5965 34 1 7.2517 -2.7224 0.2409 35 1 8.6533 -3.8192 0.2434 36 1 8.2893 -2.8433 -1.2003 37 1 5.7369 -6.1033 -0.1223 38 1 7.1631 -5.7226 0.8728 39 1 5.7612 -4.6261 0.8705 40 1 7.1939 -6.2727 -2.1457 41 1 8.2555 -4.9161 -2.5937 42 1 10.3467 -7.8993 -3.1330 43 1 4.1931 -0.4492 0.7976 44 1 3.7969 -2.1437 1.2143 45 1 1.2557 0.5187 2.7057 46 1 2.6142 -0.4806 3.2748 47 1 2.9195 0.9150 2.2130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358706251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:16 Heat of formation + Delta-G solvation = -56.479631 kcal Electronic energy + Delta-G solvation = -22994.763330 eV Core-core repulsion = 19790.480074 eV Total energy + Delta-G solvation = -3204.283256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34447 -38.43304 -36.93124 -33.74485 -33.16182 -32.00704 -31.50756 -27.40120 -26.85627 -26.58710 -26.49122 -25.36283 -22.91251 -22.06839 -20.36231 -19.80371 -18.62726 -17.42048 -16.60578 -16.24592 -15.59732 -14.95700 -14.58448 -14.47493 -14.20510 -14.01923 -13.89978 -13.33746 -13.03982 -12.99789 -12.85033 -12.71489 -12.38435 -12.23747 -12.11865 -12.04505 -11.85525 -11.13193 -11.12413 -11.05696 -10.99946 -10.84083 -10.70075 -10.61935 -10.37243 -10.23377 -9.97205 -9.85238 -9.18397 -8.90861 -8.86651 -8.37638 -8.34355 -5.98372 -3.99651 2.73606 3.31699 3.38683 3.40424 3.41921 4.05699 4.16010 4.33235 4.44142 4.47620 4.93631 4.98608 5.06343 5.11415 5.20191 5.33529 5.37114 5.38388 5.50529 5.53454 5.58769 5.66861 5.67515 5.69271 5.77545 5.81855 5.87521 6.03928 6.16462 6.20006 6.27554 6.35457 6.44150 6.62926 6.64827 6.84225 7.08499 7.09514 7.14491 7.19400 7.66452 7.79006 8.00417 8.17168 8.42330 8.82293 9.05158 9.63320 11.13145 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034984 B = 0.003177 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.178684 B = 8810.932838 C = 9340.939421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.085 0.915 4 C 0.131 3.869 5 N -0.642 5.642 6 C 0.717 3.283 7 O -0.592 6.592 8 N -0.735 5.735 9 C 0.146 3.854 10 C -0.072 4.072 11 C -0.126 4.126 12 C -0.125 4.125 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.103 3.897 23 C -0.100 4.100 24 H 0.086 0.914 25 C -0.141 4.141 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.393 0.607 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.066 0.934 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 15.450 10.531 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.103 0.897 4 C 0.008 3.992 5 N -0.381 5.381 6 C 0.419 3.581 7 O -0.470 6.470 8 N -0.390 5.390 9 C 0.023 3.977 10 C -0.073 4.073 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.001 4.001 14 C -0.549 4.549 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.021 4.021 23 C -0.119 4.119 24 H 0.104 0.896 25 C -0.199 4.199 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.228 0.772 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.295 15.130 9.437 24.156 hybrid contribution 0.964 -0.439 0.918 1.402 sum -15.331 14.691 10.355 23.624 Atomic orbital electron populations 1.21743 0.93763 1.02285 1.02049 1.22309 0.96370 0.99312 0.94027 0.89674 1.21796 0.87105 0.94112 0.96205 1.47531 1.32111 1.47789 1.10676 1.15523 0.79803 0.78518 0.84248 1.90914 1.72747 1.68424 1.14910 1.45388 1.30619 1.48455 1.14568 1.21504 0.91568 0.91391 0.93246 1.20916 0.93857 0.96325 0.96182 1.21749 0.99364 0.96803 1.00369 1.21747 1.00048 0.98818 0.97662 1.19087 0.93669 0.93042 0.94329 1.21183 1.11829 1.25297 0.96576 0.92274 1.25013 0.97852 0.96767 0.94882 1.69966 1.37220 1.34404 1.11795 0.86650 0.81907 0.79501 0.80255 1.20792 1.21346 1.19958 1.22339 0.97441 1.00554 0.81718 1.22416 0.95924 0.98806 0.94798 0.89589 1.21703 1.02113 0.99292 0.96742 0.92291 0.92165 0.92226 0.91609 0.91810 0.77154 0.92017 0.92006 0.95421 0.91464 0.93350 0.93349 0.91468 0.95446 0.96301 0.96283 0.93045 0.91502 0.90992 0.92102 0.92173 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.13 37.16 0.34 -0.50 16 2 C -0.10 -0.74 3.01 -88.79 -0.27 -1.01 16 3 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 4 C 0.13 1.43 6.47 -3.06 -0.02 1.41 16 5 N -0.64 -8.28 3.33 -176.23 -0.59 -8.87 16 6 C 0.72 12.21 8.49 -86.92 -0.74 11.47 16 7 O -0.59 -12.55 16.67 5.29 0.09 -12.46 16 8 N -0.73 -11.71 4.92 -65.22 -0.32 -12.03 16 9 C 0.15 2.73 4.56 -4.04 -0.02 2.72 16 10 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 11 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 12 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 13 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 14 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 15 H 0.06 1.51 5.68 -52.48 -0.30 1.22 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.10 0.95 6.04 -2.53 -0.02 0.94 16 23 C -0.10 -0.71 3.09 -88.47 -0.27 -0.99 16 24 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 25 C -0.14 -0.76 9.31 37.16 0.35 -0.41 16 26 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.39 5.37 4.64 -40.82 -0.19 5.18 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.07 0.57 7.98 -51.93 -0.41 0.16 16 44 H 0.07 0.64 7.30 -51.93 -0.38 0.26 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.31 8.07 -51.92 -0.42 -0.11 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -31.96 363.47 -8.78 -40.74 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.55 Total: 0.14 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.61 Total: -3.39 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.17 Total: -46.76 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.96 -8.78 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.738 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds