Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99940 * 2 1 4 4 C 1.54340 * 109.99065 * 238.96658 * 2 1 3 5 5 H 1.09001 * 110.51525 * 336.97408 * 4 2 1 6 6 C 1.52998 * 110.85210 * 100.19895 * 4 2 1 7 7 C 1.55158 * 103.01905 * 218.66716 * 4 2 1 8 8 C 1.54906 * 101.58443 * 35.30738 * 7 4 2 9 9 N 1.47024 * 109.88284 * 121.09986 * 2 1 3 10 10 C 1.34764 * 125.64635 * 298.39425 * 9 2 1 11 11 O 1.21591 * 120.00370 * 359.71488 * 10 9 2 12 12 N 1.34779 * 120.00337 * 179.71755 * 10 9 2 13 13 C 1.46492 * 120.00559 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47363 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 13 12 16 16 C 1.52999 * 109.46623 * 299.99764 * 14 13 12 17 17 C 1.52992 * 109.47223 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47490 * 179.97438 * 17 14 13 19 19 H 1.08003 * 119.99760 * 359.97438 * 18 17 14 20 20 C 1.37872 * 120.00824 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99390 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00449 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47474 * 89.99640 * 22 20 18 24 24 H 1.48501 * 109.46758 * 209.99757 * 22 20 18 25 25 H 1.48499 * 109.47026 * 329.99605 * 22 20 18 26 26 H 1.08993 * 109.47284 * 300.35559 * 1 2 3 27 27 H 1.09001 * 109.46757 * 60.35649 * 1 2 3 28 28 H 1.09001 * 109.46876 * 180.34973 * 1 2 3 29 29 H 1.08998 * 109.47520 * 175.14346 * 6 4 2 30 30 H 1.09003 * 109.46833 * 295.15066 * 6 4 2 31 31 H 1.09004 * 109.47342 * 55.13937 * 6 4 2 32 32 H 1.09003 * 110.99922 * 277.23150 * 7 4 2 33 33 H 1.08996 * 111.03494 * 153.40073 * 7 4 2 34 34 H 1.09003 * 110.36834 * 204.15863 * 8 7 4 35 35 H 1.08991 * 110.45904 * 81.87484 * 8 7 4 36 36 H 0.97009 * 119.99396 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47152 * 59.99958 * 13 12 10 38 38 H 1.09001 * 109.47164 * 300.00062 * 13 12 10 39 39 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 41 41 H 1.09004 * 109.47261 * 300.00303 * 15 14 13 42 42 H 1.09002 * 109.46716 * 179.97438 * 16 14 13 43 43 H 1.09000 * 109.47486 * 299.99829 * 16 14 13 44 44 H 1.09001 * 109.47362 * 60.00551 * 16 14 13 45 45 H 1.09001 * 109.47066 * 299.99881 * 17 14 13 46 46 H 1.08996 * 109.47747 * 59.99547 * 17 14 13 47 47 H 0.97010 * 119.99733 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 1 1.3053 -1.4406 -1.6198 6 6 2.4817 0.2388 -2.3326 7 6 3.2863 -1.5184 -0.6916 8 6 2.8099 -1.8827 0.7367 9 7 2.0300 -0.7142 1.1839 10 6 1.8074 -0.3622 2.4656 11 8 1.1459 0.6261 2.7186 12 7 2.3181 -1.1057 3.4671 13 6 2.0756 -0.7235 4.8603 14 6 2.7607 -1.7263 5.7909 15 6 4.2661 -1.7297 5.5176 16 6 2.1936 -3.1249 5.5397 17 6 2.5070 -1.3275 7.2460 18 6 3.1812 -2.3154 8.1627 19 1 3.7350 -3.1452 7.7487 20 6 3.0912 -2.1603 9.5297 21 7 2.4173 -1.1496 10.0337 22 14 3.9276 -3.3846 10.6658 23 1 5.3106 -2.9273 10.9546 24 1 3.1637 -3.4834 11.9354 25 1 3.9734 -4.7165 10.0107 26 1 -0.3633 0.5193 0.8867 27 1 -0.3633 0.5083 -0.8932 28 1 -0.3633 -1.0277 0.0063 29 1 2.9294 -0.3073 -3.1629 30 1 1.6084 0.7865 -2.6867 31 1 3.2095 0.9402 -1.9246 32 1 4.1669 -0.8768 -0.6580 33 1 3.4813 -2.4155 -1.2791 34 1 3.6656 -2.0413 1.3931 35 1 2.1806 -2.7722 0.7131 36 1 2.8456 -1.8944 3.2652 37 1 1.0031 -0.7207 5.0549 38 1 2.4800 0.2728 5.0394 39 1 4.7541 -2.4444 6.1802 40 1 4.6701 -0.7332 5.6965 41 1 4.4465 -2.0141 4.4808 42 1 2.6820 -3.8394 6.2024 43 1 1.1211 -3.1225 5.7345 44 1 2.3740 -3.4094 4.5031 45 1 2.9107 -0.3309 7.4253 46 1 1.4345 -1.3253 7.4405 47 1 2.3537 -1.0406 10.9955 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358706291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -54.563669 kcal Electronic energy + Delta-G solvation = -23182.174426 eV Core-core repulsion = 19977.974253 eV Total energy + Delta-G solvation = -3204.200173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41228 -38.33061 -36.85038 -33.76247 -32.88123 -31.94508 -31.34083 -28.43857 -27.04632 -26.48981 -25.96666 -24.38225 -23.26137 -22.35578 -20.60356 -19.54923 -18.47863 -17.37296 -16.67045 -16.25857 -15.42669 -14.98246 -14.50913 -14.30119 -14.22523 -13.90299 -13.69155 -13.41923 -13.20610 -12.91594 -12.82214 -12.69609 -12.35793 -12.07849 -12.04847 -11.97578 -11.66152 -11.26199 -11.12565 -10.99907 -10.95338 -10.84053 -10.72244 -10.61788 -10.36984 -10.23218 -9.88212 -9.85036 -9.17906 -8.90744 -8.84244 -8.37204 -8.34302 -5.98411 -3.99643 2.74089 3.31682 3.38663 3.40407 3.44246 4.07513 4.27049 4.37090 4.46939 4.51903 4.96507 5.03354 5.10975 5.22558 5.27581 5.37063 5.37920 5.42959 5.49897 5.53489 5.65014 5.67834 5.69721 5.75489 5.77905 5.88546 6.04071 6.18467 6.20279 6.26066 6.29435 6.42194 6.44521 6.63784 6.64964 6.85480 7.08826 7.09642 7.15757 7.21976 7.66489 7.79072 8.00445 8.19888 8.42416 8.85151 9.05185 9.63316 11.13088 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038955 B = 0.003216 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.607788 B = 8703.993286 C = 9083.096576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.158 3.842 3 H 0.073 0.927 4 C -0.102 4.102 5 H 0.085 0.915 6 C -0.141 4.141 7 C -0.128 4.128 8 C 0.099 3.901 9 N -0.638 5.638 10 C 0.718 3.282 11 O -0.590 6.590 12 N -0.736 5.736 13 C 0.147 3.853 14 C -0.072 4.072 15 C -0.125 4.125 16 C -0.125 4.125 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.027 0.973 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -1.977 -24.038 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.091 0.909 4 C -0.121 4.121 5 H 0.103 0.897 6 C -0.198 4.198 7 C -0.166 4.166 8 C -0.025 4.025 9 N -0.378 5.378 10 C 0.420 3.580 11 O -0.468 6.468 12 N -0.391 5.391 13 C 0.023 3.977 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.704 -1.130 -23.545 23.582 hybrid contribution 0.683 -1.064 0.705 1.447 sum 1.387 -2.194 -22.840 22.987 Atomic orbital electron populations 1.22157 0.94998 1.02076 1.02860 1.21409 0.94317 0.95888 0.83029 0.90931 1.22313 0.97605 0.97610 0.94550 0.89669 1.21746 1.01552 0.98756 0.97796 1.22838 0.97952 1.00779 0.94988 1.22238 0.95245 0.89185 0.95814 1.47676 1.56527 1.29587 1.03964 1.15522 0.80241 0.83024 0.79207 1.90898 1.45011 1.28405 1.82523 1.45402 1.57108 1.30566 1.06035 1.21488 1.00313 0.98573 0.77285 1.20912 0.94459 0.93913 0.97993 1.21745 0.96031 1.02007 0.98475 1.21746 1.00783 0.97211 0.98526 1.19083 0.97278 0.96879 0.86872 1.21182 1.32302 1.10678 0.90718 0.92280 1.25014 0.95562 0.95526 0.98417 1.69972 1.41502 1.29759 1.12152 0.86649 0.79486 0.81694 0.80482 1.20792 1.21346 1.19961 0.90849 0.92092 0.92783 0.92147 0.92268 0.92297 0.90438 0.89923 0.90973 0.91646 0.77196 0.92049 0.92060 0.91488 0.93362 0.95442 0.91485 0.93368 0.95424 0.96312 0.96303 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.11 37.16 0.34 -1.46 16 2 C 0.16 1.72 3.06 -66.94 -0.20 1.51 16 3 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 4 C -0.10 -0.75 3.07 -88.78 -0.27 -1.02 16 5 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 6 C -0.14 -0.85 9.15 37.16 0.34 -0.51 16 7 C -0.13 -0.88 6.54 -24.58 -0.16 -1.04 16 8 C 0.10 0.90 6.57 -2.53 -0.02 0.88 16 9 N -0.64 -8.11 3.06 -168.68 -0.52 -8.62 16 10 C 0.72 12.00 8.28 -86.93 -0.72 11.28 16 11 O -0.59 -12.15 15.39 5.29 0.08 -12.07 16 12 N -0.74 -11.62 4.92 -65.23 -0.32 -11.94 16 13 C 0.15 2.73 4.56 -4.04 -0.02 2.71 16 14 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 15 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 16 C -0.13 -2.24 8.05 37.16 0.30 -1.95 16 17 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 18 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 19 H 0.06 1.51 5.68 -52.48 -0.30 1.22 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.07 1.05 6.89 -51.93 -0.36 0.69 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 32 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.62 7.30 -51.93 -0.38 0.25 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.39 5.34 4.64 -40.82 -0.19 5.15 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -31.64 360.90 -8.76 -40.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.48 Total: 1.06 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.67 Total: -4.67 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.10 Total: -46.42 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.64 -8.76 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.163 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds