Wall clock time and date at job start Tue Mar 31 2020 06:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 110.77467 * 2 1 4 4 C 1.55157 * 110.71675 * 123.23243 * 2 1 3 5 5 C 1.54915 * 101.57970 * 153.86725 * 4 2 1 6 6 N 1.47429 * 104.82771 * 322.99201 * 5 4 2 7 7 C 1.34780 * 125.64224 * 204.16363 * 6 5 4 8 8 O 1.21583 * 119.99797 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00007 * 359.95507 * 7 6 5 10 10 C 1.46505 * 119.99899 * 179.97438 * 9 7 6 11 11 C 1.52990 * 109.47059 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47464 * 300.00227 * 11 10 9 13 13 C 1.53003 * 109.47152 * 60.00627 * 11 10 9 14 14 C 1.53005 * 109.46950 * 180.02562 * 11 10 9 15 15 C 1.50702 * 109.47198 * 180.02562 * 14 11 10 16 16 H 1.08007 * 119.99623 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00084 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99985 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99913 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47033 * 90.00296 * 19 17 15 21 21 H 1.48498 * 109.47003 * 210.00246 * 19 17 15 22 22 H 1.48498 * 109.47042 * 329.99805 * 19 17 15 23 23 C 1.47014 * 108.70739 * 24.12431 * 6 5 4 24 24 H 1.08999 * 109.88297 * 118.51115 * 23 6 5 25 25 C 1.52997 * 109.88588 * 239.52499 * 23 6 5 26 26 H 1.09002 * 109.46627 * 183.24711 * 1 2 3 27 27 H 1.08996 * 109.47035 * 303.24143 * 1 2 3 28 28 H 1.08994 * 109.47276 * 63.24710 * 1 2 3 29 29 H 1.09000 * 111.00863 * 35.79060 * 4 2 1 30 30 H 1.09001 * 111.03956 * 271.95290 * 4 2 1 31 31 H 1.08998 * 110.36803 * 204.15086 * 5 4 2 32 32 H 1.09000 * 110.36415 * 81.82332 * 5 4 2 33 33 H 0.97000 * 119.99971 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.47098 * 300.00875 * 10 9 7 35 35 H 1.09005 * 109.46667 * 60.00471 * 10 9 7 36 36 H 1.08997 * 109.47074 * 60.00253 * 12 11 10 37 37 H 1.08998 * 109.47501 * 179.97438 * 12 11 10 38 38 H 1.08995 * 109.47219 * 300.00204 * 12 11 10 39 39 H 1.08991 * 109.47139 * 59.99646 * 13 11 10 40 40 H 1.09007 * 109.47006 * 180.02562 * 13 11 10 41 41 H 1.08997 * 109.47011 * 299.99518 * 13 11 10 42 42 H 1.08995 * 109.47024 * 299.99764 * 14 11 10 43 43 H 1.08995 * 109.47045 * 60.00217 * 14 11 10 44 44 H 0.97002 * 119.99714 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47153 * 58.54629 * 25 23 6 46 46 H 1.09001 * 109.46832 * 298.54820 * 25 23 6 47 47 H 1.09004 * 109.47261 * 178.54801 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7953 1.2139 5 6 3.4633 -1.2497 0.6877 6 7 3.2445 -1.5507 -0.7388 7 6 3.9916 -2.3847 -1.4891 8 8 3.7174 -2.5586 -2.6608 9 7 5.0427 -3.0256 -0.9407 10 6 5.8544 -3.9326 -1.7561 11 6 6.9741 -4.5253 -0.8985 12 6 7.8557 -3.3969 -0.3597 13 6 6.3647 -5.2995 0.2721 14 6 7.8222 -5.4720 -1.7503 15 6 8.9248 -6.0564 -0.9054 16 1 9.0117 -5.7804 0.1352 17 6 9.8220 -6.9440 -1.4605 18 7 9.7158 -7.2804 -2.7274 19 14 11.1884 -7.6689 -0.4129 20 1 10.7142 -8.9269 0.2176 21 1 12.3675 -7.9577 -1.2681 22 1 11.5695 -6.6982 0.6443 23 6 2.0761 -0.7913 -1.2071 24 1 2.3736 -0.1045 -1.9995 25 6 1.0050 -1.7524 -1.7268 26 1 -0.3633 -1.0261 0.0582 27 1 -0.3633 0.5633 0.8595 28 1 -0.3633 0.4626 -0.9176 29 1 1.4452 -1.6534 1.4377 30 1 2.1850 -0.1522 2.0875 31 1 3.7961 -2.1425 1.2172 32 1 4.1931 -0.4477 0.7985 33 1 5.2613 -2.8870 -0.0058 34 1 5.2264 -4.7367 -2.1396 35 1 6.2883 -3.3811 -2.5903 36 1 7.2519 -2.7221 0.2470 37 1 8.6532 -3.8191 0.2516 38 1 8.2899 -2.8454 -1.1936 39 1 5.7367 -6.1034 -0.1117 40 1 7.1625 -5.7214 0.8833 41 1 5.7608 -4.6248 0.8788 42 1 7.1944 -6.2760 -2.1343 43 1 8.2564 -4.9202 -2.5839 44 1 10.3473 -7.9046 -3.1180 45 1 0.7180 -2.4408 -0.9319 46 1 1.4019 -2.3168 -2.5706 47 1 0.1320 -1.1842 -2.0482 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358706292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:13 Heat of formation + Delta-G solvation = -50.476236 kcal Electronic energy + Delta-G solvation = -23237.921347 eV Core-core repulsion = 20033.898418 eV Total energy + Delta-G solvation = -3204.022929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47150 -38.40721 -36.86650 -33.84126 -32.97012 -31.89032 -31.25245 -27.98620 -27.01963 -26.49115 -25.98615 -25.00878 -23.27994 -22.48199 -20.16684 -19.30900 -18.52931 -17.54624 -16.44284 -16.19229 -15.76180 -15.21912 -14.57108 -14.30820 -14.22824 -13.96315 -13.68702 -13.33410 -13.09455 -12.90879 -12.74430 -12.66309 -12.34074 -12.11264 -12.04942 -11.98718 -11.59943 -11.20819 -11.12442 -10.99920 -10.86242 -10.84074 -10.67066 -10.61701 -10.37074 -10.23292 -9.87686 -9.84974 -9.17915 -8.90822 -8.84128 -8.37609 -8.34387 -5.98438 -3.99686 2.74128 3.31658 3.38645 3.40380 3.44058 4.07373 4.27139 4.38376 4.46848 4.53701 4.94828 5.00809 5.10618 5.23545 5.30759 5.37065 5.43374 5.47164 5.49279 5.52813 5.60004 5.67413 5.71812 5.76034 5.77829 5.92015 6.03189 6.16881 6.20178 6.27455 6.31542 6.44369 6.45008 6.63844 6.64912 6.85464 7.08744 7.09617 7.15670 7.21870 7.66427 7.79039 8.00393 8.19873 8.42355 8.85184 9.05134 9.63283 11.13065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040350 B = 0.003216 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.758466 B = 8704.770053 C = 9081.970672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.126 4.126 5 C 0.098 3.902 6 N -0.638 5.638 7 C 0.718 3.282 8 O -0.590 6.590 9 N -0.736 5.736 10 C 0.147 3.853 11 C -0.072 4.072 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.158 3.842 24 H 0.070 0.930 25 C -0.164 4.164 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.393 0.607 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.026 0.974 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.670 14.830 9.226 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.025 4.025 6 N -0.377 5.377 7 C 0.420 3.580 8 O -0.468 6.468 9 N -0.391 5.391 10 C 0.023 3.977 11 C -0.073 4.073 12 C -0.183 4.183 13 C -0.183 4.183 14 C -0.001 4.001 15 C -0.549 4.549 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C 0.054 3.946 24 H 0.088 0.912 25 C -0.222 4.222 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.228 0.772 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.703 14.510 8.142 23.575 hybrid contribution 1.007 -0.425 0.973 1.463 sum -15.696 14.084 9.115 22.974 Atomic orbital electron populations 1.21846 0.93838 1.02442 1.01804 1.22258 0.96436 0.99061 0.94276 0.89846 1.22837 0.95725 1.00335 0.97554 1.22250 0.97758 1.00508 0.82007 1.47677 1.31646 1.47793 1.10631 1.15522 0.79676 0.78496 0.84284 1.90894 1.72692 1.68301 1.14909 1.45405 1.30677 1.48455 1.14581 1.21487 0.91555 0.91353 0.93258 1.20912 0.93876 0.96326 0.96168 1.21744 0.99358 0.96798 1.00369 1.21744 1.00034 0.98811 0.97664 1.19086 0.93671 0.93020 0.94336 1.21185 1.11897 1.25223 0.96582 0.92278 1.25014 0.97849 0.96763 0.94883 1.69967 1.37196 1.34381 1.11841 0.86652 0.81900 0.79501 0.80270 1.20792 1.21346 1.19958 1.21325 0.85048 0.92433 0.95819 0.91157 1.22237 0.98066 0.99721 1.02157 0.91847 0.92500 0.92203 0.90477 0.89964 0.91005 0.91572 0.77198 0.92067 0.92039 0.95420 0.91486 0.93363 0.93367 0.91487 0.95450 0.96319 0.96294 0.93047 0.92727 0.90936 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 7.99 37.16 0.30 -0.56 16 2 C -0.10 -0.74 3.48 -88.78 -0.31 -1.05 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -0.87 6.53 -24.58 -0.16 -1.03 16 5 C 0.10 0.89 6.57 -2.52 -0.02 0.87 16 6 N -0.64 -8.08 3.08 -168.69 -0.52 -8.60 16 7 C 0.72 11.98 8.27 -86.91 -0.72 11.26 16 8 O -0.59 -12.11 15.23 5.29 0.08 -12.03 16 9 N -0.74 -11.61 4.92 -65.23 -0.32 -11.93 16 10 C 0.15 2.73 4.56 -4.04 -0.02 2.71 16 11 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 12 C -0.13 -2.24 8.05 37.16 0.30 -1.95 16 13 C -0.13 -2.23 8.05 37.16 0.30 -1.94 16 14 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 15 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 16 H 0.06 1.51 5.68 -52.48 -0.30 1.22 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.16 1.71 3.43 -66.96 -0.23 1.48 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.16 -1.81 7.93 37.16 0.29 -1.51 16 26 H 0.06 0.41 6.61 -51.93 -0.34 0.06 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.34 7.59 -51.93 -0.39 -0.05 16 29 H 0.08 0.55 8.02 -51.93 -0.42 0.13 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.39 5.33 4.64 -40.82 -0.19 5.14 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.05 0.59 7.53 -51.93 -0.39 0.19 16 46 H 0.07 1.04 6.74 -51.93 -0.35 0.69 16 47 H 0.06 0.56 6.70 -51.93 -0.35 0.21 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -31.61 355.56 -8.80 -40.42 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.29 Total: 1.22 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.82 Total: -4.83 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.10 Total: -46.39 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.61 -8.80 -40.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.061 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds