Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.64321 * 2 1 4 4 C 1.55156 * 110.71856 * 236.85602 * 2 1 3 5 5 C 1.54904 * 101.58556 * 206.13328 * 4 2 1 6 6 N 1.47426 * 104.82897 * 37.00975 * 5 4 2 7 7 C 1.34781 * 125.64694 * 155.83179 * 6 5 4 8 8 O 1.21587 * 119.99999 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99975 * 0.02945 * 7 6 5 10 10 C 1.46505 * 119.99811 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47346 * 59.99584 * 11 10 9 13 13 C 1.53002 * 109.46891 * 299.99581 * 11 10 9 14 14 C 1.53000 * 109.47328 * 179.97438 * 11 10 9 15 15 C 1.50696 * 109.47457 * 179.97438 * 14 11 10 16 16 H 1.08003 * 120.00087 * 0.02562 * 15 14 11 17 17 C 1.37875 * 119.99956 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 60.00735 * 19 17 15 21 21 H 1.48503 * 109.47399 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47295 * 300.00832 * 19 17 15 23 23 C 1.47017 * 108.70386 * 336.10031 * 6 5 4 24 24 H 1.09005 * 109.88449 * 241.40856 * 23 6 5 25 25 C 1.53001 * 109.88345 * 120.24530 * 23 6 5 26 26 H 1.08994 * 109.47290 * 181.69072 * 1 2 3 27 27 H 1.09003 * 109.46761 * 301.69139 * 1 2 3 28 28 H 1.08993 * 109.47053 * 61.68439 * 1 2 3 29 29 H 1.09008 * 111.00256 * 88.05978 * 4 2 1 30 30 H 1.09000 * 111.04035 * 324.22537 * 4 2 1 31 31 H 1.08995 * 110.37053 * 278.17610 * 5 4 2 32 32 H 1.08994 * 110.46269 * 155.89452 * 5 4 2 33 33 H 0.96993 * 120.00049 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47372 * 59.99714 * 10 9 7 35 35 H 1.09000 * 109.47120 * 299.99711 * 10 9 7 36 36 H 1.09002 * 109.47070 * 180.02562 * 12 11 10 37 37 H 1.08992 * 109.46974 * 300.00318 * 12 11 10 38 38 H 1.08996 * 109.46550 * 60.00424 * 12 11 10 39 39 H 1.08998 * 109.47844 * 299.99997 * 13 11 10 40 40 H 1.09001 * 109.47248 * 60.00689 * 13 11 10 41 41 H 1.09002 * 109.47097 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47194 * 59.99524 * 14 11 10 43 43 H 1.09004 * 109.46724 * 300.00183 * 14 11 10 44 44 H 0.97000 * 119.99806 * 0.02562 * 18 17 15 45 45 H 1.09004 * 109.47363 * 61.45528 * 25 23 6 46 46 H 1.09002 * 109.47543 * 181.45285 * 25 23 6 47 47 H 1.08997 * 109.47255 * 301.45629 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7934 -1.2151 5 6 3.4632 -1.2487 -0.6897 6 7 3.2445 -1.5520 0.7363 7 6 3.9915 -2.3873 1.4853 8 8 3.7173 -2.5630 2.6567 9 7 5.0423 -3.0277 0.9357 10 6 5.8546 -3.9351 1.7499 11 6 6.9747 -4.5261 0.8915 12 6 7.8555 -3.3964 0.3541 13 6 6.3655 -5.2992 -0.2799 14 6 7.8234 -5.4734 1.7420 15 6 8.9263 -6.0560 0.8963 16 1 9.0135 -5.7781 -0.1437 17 6 9.8246 -6.9429 1.4505 18 7 9.7188 -7.2810 2.7170 19 14 11.1922 -7.6646 0.4024 20 1 12.0466 -6.5680 -0.1199 21 1 12.0159 -8.5841 1.2279 22 1 10.6010 -8.4156 -0.7341 23 6 2.0728 -0.7975 1.2045 24 1 2.3668 -0.1113 1.9988 25 6 1.0027 -1.7634 1.7170 26 1 -0.3633 -1.0271 0.0303 27 1 -0.3633 0.5399 0.8745 28 1 -0.3633 0.4874 -0.9046 29 1 2.1849 -0.1483 -2.0874 30 1 1.4453 -1.6512 -1.4409 31 1 4.1931 -0.4466 -0.7993 32 1 3.7978 -2.1401 -1.2202 33 1 5.2608 -2.8877 0.0011 34 1 5.2269 -4.7397 2.1332 35 1 6.2889 -3.3843 2.5843 36 1 8.6533 -3.8175 -0.2579 37 1 7.2512 -2.7213 -0.2517 38 1 8.2895 -2.8458 1.1887 39 1 5.7380 -6.1040 0.1028 40 1 5.7612 -4.6240 -0.8858 41 1 7.1635 -5.7206 -0.8913 42 1 7.1961 -6.2782 2.1252 43 1 8.2573 -4.9222 2.5763 44 1 9.0085 -6.9065 3.2612 45 1 1.3985 -2.3304 2.5596 46 1 0.1273 -1.1988 2.0383 47 1 0.7197 -2.4492 0.9185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358706293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = -53.762172 kcal Electronic energy + Delta-G solvation = -23277.532940 eV Core-core repulsion = 20073.367522 eV Total energy + Delta-G solvation = -3204.165418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.52493 -38.48006 -36.97834 -33.95376 -33.11834 -31.94326 -31.28994 -27.98935 -26.64807 -26.57113 -26.04395 -25.04152 -23.26093 -22.52936 -20.23526 -19.36312 -18.66855 -17.80188 -16.50345 -16.37586 -15.80012 -15.28862 -14.47956 -14.33341 -14.17057 -13.91548 -13.71025 -13.52769 -13.30736 -12.97507 -12.79521 -12.73091 -12.40000 -12.19229 -12.05831 -11.73362 -11.61021 -11.24818 -11.18466 -11.14923 -11.00706 -10.89739 -10.69824 -10.64201 -10.21939 -10.09420 -9.97567 -9.92698 -9.43650 -8.90446 -8.46176 -8.43898 -8.30306 -6.31598 -4.00608 2.68563 3.38054 3.44133 3.45739 3.64409 4.02485 4.23650 4.34305 4.50636 4.56431 4.90908 4.97319 5.08004 5.19088 5.27264 5.40080 5.42507 5.43123 5.44977 5.46752 5.56559 5.58845 5.67014 5.67997 5.73288 5.89027 5.99063 6.10587 6.12136 6.17941 6.24059 6.34952 6.39487 6.54750 6.57110 6.77039 6.99416 7.00377 7.04218 7.15483 7.37009 7.51800 8.13174 8.23801 8.48917 8.78812 8.91692 9.70389 11.08381 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.003227 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.247511 B = 8673.465323 C = 9051.843138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.098 3.902 6 N -0.638 5.638 7 C 0.719 3.281 8 O -0.590 6.590 9 N -0.736 5.736 10 C 0.146 3.854 11 C -0.065 4.065 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.023 3.977 15 C -0.591 4.591 16 H 0.053 0.947 17 C 0.013 3.987 18 N -0.914 5.914 19 Si 1.066 2.934 20 H -0.289 1.289 21 H -0.283 1.283 22 H -0.289 1.289 23 C 0.158 3.842 24 H 0.070 0.930 25 C -0.163 4.163 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.393 0.607 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.028 0.972 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.028 0.972 41 H 0.068 0.932 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.269 0.731 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 15.121 -9.685 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.025 4.025 6 N -0.377 5.377 7 C 0.421 3.579 8 O -0.468 6.468 9 N -0.391 5.391 10 C 0.023 3.977 11 C -0.066 4.066 12 C -0.182 4.182 13 C -0.182 4.182 14 C -0.014 4.014 15 C -0.630 4.630 16 H 0.071 0.929 17 C -0.191 4.191 18 N -0.551 5.551 19 Si 0.895 3.105 20 H -0.216 1.216 21 H -0.209 1.209 22 H -0.216 1.216 23 C 0.054 3.946 24 H 0.089 0.911 25 C -0.221 4.221 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.698 13.878 -8.704 22.689 hybrid contribution -1.143 1.131 -0.530 1.693 sum -16.841 15.010 -9.234 24.376 Atomic orbital electron populations 1.21872 0.93841 1.02609 1.01796 1.22259 0.96484 0.99031 0.94253 0.89795 1.22832 0.95664 1.00374 0.97580 1.22251 0.97816 1.00503 0.81972 1.47673 1.31475 1.47807 1.10746 1.15512 0.79661 0.78480 0.84286 1.90895 1.72699 1.68291 1.14927 1.45372 1.30725 1.48429 1.14592 1.21482 0.91560 0.91383 0.93291 1.20765 0.93668 0.96138 0.96028 1.21735 0.99386 0.96678 1.00395 1.21735 1.00072 0.98749 0.97626 1.19207 0.94319 0.93087 0.94800 1.21970 1.14045 1.29119 0.97824 0.92896 1.25782 1.00388 0.95268 0.97613 1.70767 1.34027 1.43572 1.06699 0.83585 0.75800 0.76311 0.74851 1.21554 1.20886 1.21557 1.21322 0.84950 0.92437 0.95902 0.91147 1.22235 0.98086 0.99686 1.02140 0.91684 0.92256 0.92455 0.89927 0.90460 0.91552 0.91033 0.77147 0.92140 0.92131 0.91337 0.95275 0.93466 0.93476 0.95307 0.91328 0.97280 0.97271 0.92043 0.90963 0.91746 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.03 37.16 0.30 -0.56 16 2 C -0.10 -0.74 3.49 -88.79 -0.31 -1.05 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -0.87 6.53 -24.59 -0.16 -1.03 16 5 C 0.10 0.88 6.58 -2.53 -0.02 0.87 16 6 N -0.64 -8.06 3.08 -168.70 -0.52 -8.58 16 7 C 0.72 11.96 8.27 -86.92 -0.72 11.24 16 8 O -0.59 -12.08 15.24 5.29 0.08 -12.00 16 9 N -0.74 -11.62 4.92 -65.22 -0.32 -11.94 16 10 C 0.15 2.72 4.56 -4.04 -0.02 2.70 16 11 C -0.07 -1.28 0.54 -154.51 -0.08 -1.36 16 12 C -0.12 -2.26 8.05 37.16 0.30 -1.96 16 13 C -0.12 -2.25 8.05 37.16 0.30 -1.96 16 14 C 0.02 0.58 3.35 -27.88 -0.09 0.48 16 15 C -0.59 -15.97 7.65 -34.44 -0.26 -16.23 16 16 H 0.05 1.38 5.68 -52.48 -0.30 1.09 16 17 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 18 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 19 Si 1.07 24.99 29.90 -169.99 -5.08 19.91 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 23 C 0.16 1.70 3.42 -66.96 -0.23 1.48 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.16 -1.79 7.88 37.16 0.29 -1.50 16 26 H 0.06 0.42 6.29 -51.93 -0.33 0.09 16 27 H 0.06 0.33 7.85 -51.93 -0.41 -0.07 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.62 7.29 -51.93 -0.38 0.24 16 33 H 0.39 5.36 4.64 -40.82 -0.19 5.17 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 37 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 41 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 42 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 43 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 44 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 45 H 0.07 1.03 6.75 -51.93 -0.35 0.68 16 46 H 0.06 0.56 6.80 -51.93 -0.35 0.20 16 47 H 0.05 0.58 7.52 -51.93 -0.39 0.19 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -32.27 354.30 -8.79 -41.05 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.24 Total: 1.97 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.80 Total: -8.59 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.08 Total: -47.68 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.27 -8.79 -41.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.710 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds