Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.64321 * 2 1 4 4 C 1.55156 * 110.71856 * 236.85602 * 2 1 3 5 5 C 1.54904 * 101.58556 * 206.13328 * 4 2 1 6 6 N 1.47426 * 104.82897 * 37.00975 * 5 4 2 7 7 C 1.34781 * 125.64694 * 155.83179 * 6 5 4 8 8 O 1.21587 * 119.99999 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99975 * 0.02945 * 7 6 5 10 10 C 1.46505 * 119.99811 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47346 * 59.99584 * 11 10 9 13 13 C 1.53002 * 109.46891 * 299.99581 * 11 10 9 14 14 C 1.53000 * 109.47328 * 179.97438 * 11 10 9 15 15 C 1.50696 * 109.47457 * 179.97438 * 14 11 10 16 16 H 1.08003 * 120.00087 * 0.02562 * 15 14 11 17 17 C 1.37875 * 119.99956 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99908 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 60.00735 * 19 17 15 21 21 H 1.48503 * 109.47399 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47295 * 300.00832 * 19 17 15 23 23 C 1.47017 * 108.70386 * 336.10031 * 6 5 4 24 24 H 1.09005 * 109.88449 * 241.40856 * 23 6 5 25 25 C 1.53001 * 109.88345 * 120.24530 * 23 6 5 26 26 H 1.08994 * 109.47290 * 181.69072 * 1 2 3 27 27 H 1.09003 * 109.46761 * 301.69139 * 1 2 3 28 28 H 1.08993 * 109.47053 * 61.68439 * 1 2 3 29 29 H 1.09008 * 111.00256 * 88.05978 * 4 2 1 30 30 H 1.09000 * 111.04035 * 324.22537 * 4 2 1 31 31 H 1.08995 * 110.37053 * 278.17610 * 5 4 2 32 32 H 1.08994 * 110.46269 * 155.89452 * 5 4 2 33 33 H 0.96993 * 120.00049 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47372 * 59.99714 * 10 9 7 35 35 H 1.09000 * 109.47120 * 299.99711 * 10 9 7 36 36 H 1.09002 * 109.47070 * 180.02562 * 12 11 10 37 37 H 1.08992 * 109.46974 * 300.00318 * 12 11 10 38 38 H 1.08996 * 109.46550 * 60.00424 * 12 11 10 39 39 H 1.08998 * 109.47844 * 299.99997 * 13 11 10 40 40 H 1.09001 * 109.47248 * 60.00689 * 13 11 10 41 41 H 1.09002 * 109.47097 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47194 * 59.99524 * 14 11 10 43 43 H 1.09004 * 109.46724 * 300.00183 * 14 11 10 44 44 H 0.97000 * 119.99806 * 0.02562 * 18 17 15 45 45 H 1.09004 * 109.47363 * 61.45528 * 25 23 6 46 46 H 1.09002 * 109.47543 * 181.45285 * 25 23 6 47 47 H 1.08997 * 109.47255 * 301.45629 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7934 -1.2151 5 6 3.4632 -1.2487 -0.6897 6 7 3.2445 -1.5520 0.7363 7 6 3.9915 -2.3873 1.4853 8 8 3.7173 -2.5630 2.6567 9 7 5.0423 -3.0277 0.9357 10 6 5.8546 -3.9351 1.7499 11 6 6.9747 -4.5261 0.8915 12 6 7.8555 -3.3964 0.3541 13 6 6.3655 -5.2992 -0.2799 14 6 7.8234 -5.4734 1.7420 15 6 8.9263 -6.0560 0.8963 16 1 9.0135 -5.7781 -0.1437 17 6 9.8246 -6.9429 1.4505 18 7 9.7188 -7.2810 2.7170 19 14 11.1922 -7.6646 0.4024 20 1 12.0466 -6.5680 -0.1199 21 1 12.0159 -8.5841 1.2279 22 1 10.6010 -8.4156 -0.7341 23 6 2.0728 -0.7975 1.2045 24 1 2.3668 -0.1113 1.9988 25 6 1.0027 -1.7634 1.7170 26 1 -0.3633 -1.0271 0.0303 27 1 -0.3633 0.5399 0.8745 28 1 -0.3633 0.4874 -0.9046 29 1 2.1849 -0.1483 -2.0874 30 1 1.4453 -1.6512 -1.4409 31 1 4.1931 -0.4466 -0.7993 32 1 3.7978 -2.1401 -1.2202 33 1 5.2608 -2.8877 0.0011 34 1 5.2269 -4.7397 2.1332 35 1 6.2889 -3.3843 2.5843 36 1 8.6533 -3.8175 -0.2579 37 1 7.2512 -2.7213 -0.2517 38 1 8.2895 -2.8458 1.1887 39 1 5.7380 -6.1040 0.1028 40 1 5.7612 -4.6240 -0.8858 41 1 7.1635 -5.7206 -0.8913 42 1 7.1961 -6.2782 2.1252 43 1 8.2573 -4.9222 2.5763 44 1 9.0085 -6.9065 3.2612 45 1 1.3985 -2.3304 2.5596 46 1 0.1273 -1.1988 2.0383 47 1 0.7197 -2.4492 0.9185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358706293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = -73.295213 kcal Electronic energy + Delta-G solvation = -23278.379956 eV Core-core repulsion = 20073.367522 eV Total energy + Delta-G solvation = -3205.012434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61493 -39.67573 -38.45867 -35.54169 -34.49600 -33.41629 -32.07847 -28.98596 -28.50870 -28.07619 -27.38991 -25.89553 -24.87555 -23.75767 -21.28633 -20.54344 -19.89724 -19.08033 -18.47026 -17.30465 -17.05599 -16.47307 -15.96914 -15.69641 -15.53748 -15.39977 -14.81302 -14.72380 -14.32530 -14.32305 -13.91200 -13.71426 -13.68098 -13.45679 -13.08642 -13.01673 -12.83709 -12.82053 -12.64128 -12.38040 -12.28147 -11.95323 -11.88552 -11.82613 -11.65735 -11.51361 -11.38868 -11.31442 -11.17839 -10.51246 -10.48856 -10.27251 -9.53065 -8.59578 -6.28771 1.53874 1.55975 1.63527 1.81181 2.08362 2.61328 2.99034 3.23803 3.54232 3.63222 3.85106 3.91357 3.96719 4.08325 4.19238 4.31424 4.40379 4.53267 4.55903 4.60217 4.63638 4.65225 4.68834 4.81132 4.85729 4.91980 4.94108 4.96777 4.99696 5.10478 5.12468 5.23206 5.24151 5.29233 5.31419 5.33864 5.41106 5.44197 5.48376 5.56618 5.62767 6.02501 6.09384 6.27304 6.64555 6.94960 7.51732 7.52382 8.80379 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040264 B = 0.003227 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.247511 B = 8673.465323 C = 9051.843138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.117 4.117 5 C 0.087 3.913 6 N -0.634 5.634 7 C 0.712 3.288 8 O -0.637 6.637 9 N -0.723 5.723 10 C 0.162 3.838 11 C -0.058 4.058 12 C -0.118 4.118 13 C -0.118 4.118 14 C 0.025 3.975 15 C -0.589 4.589 16 H 0.066 0.934 17 C -0.047 4.047 18 N -0.947 5.947 19 Si 1.115 2.885 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.267 1.267 23 C 0.147 3.853 24 H 0.055 0.945 25 C -0.156 4.156 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.407 0.593 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.057 0.943 42 H -0.019 1.019 43 H -0.019 1.019 44 H 0.252 0.748 45 H 0.030 0.970 46 H 0.086 0.914 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.765 16.997 -13.462 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.155 4.155 5 C -0.035 4.035 6 N -0.372 5.372 7 C 0.413 3.587 8 O -0.519 6.519 9 N -0.380 5.380 10 C 0.037 3.963 11 C -0.058 4.058 12 C -0.176 4.176 13 C -0.175 4.175 14 C -0.013 4.013 15 C -0.627 4.627 16 H 0.085 0.915 17 C -0.243 4.243 18 N -0.586 5.586 19 Si 0.937 3.063 20 H -0.192 1.192 21 H -0.218 1.218 22 H -0.192 1.192 23 C 0.043 3.957 24 H 0.073 0.927 25 C -0.214 4.214 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.129 0.871 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.076 0.924 42 H -0.001 1.001 43 H -0.001 1.001 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.105 0.895 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.619 15.806 -12.552 26.146 hybrid contribution -0.952 0.612 0.678 1.319 sum -17.572 16.418 -11.874 26.820 Atomic orbital electron populations 1.21865 0.92642 1.02584 1.02856 1.22248 0.97310 0.98986 0.92400 0.88483 1.22855 0.93896 1.00730 0.98042 1.22606 0.99866 1.01459 0.79536 1.47749 1.30951 1.46257 1.12236 1.15711 0.79948 0.78984 0.84028 1.90866 1.73867 1.69911 1.17287 1.45023 1.30334 1.47876 1.14800 1.21045 0.91200 0.91067 0.92996 1.20598 0.93486 0.95907 0.95852 1.21660 0.99254 0.96398 1.00238 1.21660 0.99935 0.99022 0.96920 1.19135 0.94376 0.93123 0.94649 1.22348 1.13750 1.28071 0.98487 0.91544 1.27367 1.03098 0.95973 0.97836 1.70911 1.34374 1.45246 1.08036 0.82964 0.73303 0.76284 0.73790 1.19240 1.21779 1.19237 1.21582 0.84320 0.92273 0.97509 0.92705 1.22165 0.98883 0.99685 1.00665 0.92200 0.92035 0.90671 0.87061 0.90463 0.90108 0.90263 0.75483 0.94084 0.94080 0.92361 0.91273 0.94627 0.94627 0.91289 0.92357 1.00079 1.00071 0.93872 0.95055 0.89485 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.03 71.98 0.58 -0.65 16 2 C -0.09 -1.03 3.49 -9.61 -0.03 -1.06 16 3 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -1.12 6.53 31.98 0.21 -0.91 16 5 C 0.09 1.27 6.58 86.85 0.57 1.84 16 6 N -0.63 -15.15 3.08 -805.92 -2.48 -17.63 16 7 C 0.71 23.65 8.27 179.05 1.48 25.13 16 8 O -0.64 -27.22 15.24 -3.99 -0.06 -27.28 16 9 N -0.72 -22.19 4.92 -478.53 -2.35 -24.54 16 10 C 0.16 6.17 4.56 86.38 0.39 6.57 16 11 C -0.06 -2.26 0.54 -52.18 -0.03 -2.29 16 12 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 13 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 14 C 0.02 1.28 3.35 29.85 0.10 1.38 16 15 C -0.59 -32.07 7.65 25.60 0.20 -31.87 16 16 H 0.07 3.40 5.68 -2.91 -0.02 3.38 16 17 C -0.05 -2.67 5.46 84.65 0.46 -2.21 16 18 N -0.95 -59.87 13.65 21.45 0.29 -59.58 16 19 Si 1.11 49.84 29.90 68.60 2.05 51.89 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 C 0.15 3.00 3.42 45.34 0.16 3.15 16 24 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 25 C -0.16 -3.37 7.88 71.98 0.57 -2.80 16 26 H 0.06 0.60 6.29 -2.39 -0.02 0.58 16 27 H 0.06 0.52 7.85 -2.39 -0.02 0.50 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.78 8.05 -2.39 -0.02 0.76 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.06 7.29 -2.39 -0.02 1.04 16 33 H 0.41 9.92 4.64 -92.71 -0.43 9.49 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.15 6.62 -2.39 -0.02 2.13 16 37 H 0.07 1.83 6.86 -2.39 -0.02 1.82 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.82 6.86 -2.39 -0.02 1.81 16 41 H 0.06 2.15 6.62 -2.39 -0.02 2.13 16 42 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 43 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 44 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 45 H 0.03 0.93 6.75 -2.38 -0.02 0.91 16 46 H 0.09 1.42 6.80 -2.39 -0.02 1.40 16 47 H 0.06 1.20 7.52 -2.39 -0.02 1.18 16 Total: -1.00 -74.36 354.30 3.86 -70.50 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.61 Total: 17.40 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 5.81 Total: -10.77 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.54 Total: -101.75 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.06 Total: -27.28 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Total: -74.36 3.86 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358706293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.794 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds