Wall clock time and date at job start Tue Mar 31 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.99680 * 2 1 4 4 C 1.54320 * 109.88006 * 121.09438 * 2 1 3 5 5 C 1.55158 * 103.10063 * 141.52472 * 4 2 1 6 6 C 1.55121 * 101.48643 * 324.71605 * 5 4 2 7 7 H 1.08997 * 110.30212 * 277.90924 * 6 5 4 8 8 C 1.52996 * 110.42044 * 155.70406 * 6 5 4 9 9 N 1.47021 * 109.88601 * 238.90721 * 2 1 3 10 10 C 1.34776 * 125.65110 * 61.60088 * 9 2 1 11 11 O 1.21586 * 120.00068 * 175.95256 * 10 9 2 12 12 N 1.34779 * 119.99993 * 355.95530 * 10 9 2 13 13 C 1.46495 * 120.00303 * 185.26733 * 12 10 9 14 14 C 1.52994 * 109.47295 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47175 * 299.99948 * 14 13 12 16 16 C 1.52994 * 109.47180 * 60.00159 * 14 13 12 17 17 C 1.53002 * 109.47055 * 180.02562 * 14 13 12 18 18 C 1.50699 * 109.47059 * 180.02562 * 17 14 13 19 19 H 1.07995 * 120.00341 * 359.97438 * 18 17 14 20 20 C 1.37883 * 120.00088 * 179.97438 * 18 17 14 21 21 N 1.31518 * 119.99508 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00297 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46933 * 59.99549 * 22 20 18 24 24 H 1.48496 * 109.47150 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46877 * 300.00033 * 22 20 18 26 26 H 1.08991 * 109.47253 * 300.36188 * 1 2 3 27 27 H 1.09000 * 109.46602 * 60.36037 * 1 2 3 28 28 H 1.08996 * 109.46687 * 180.35411 * 1 2 3 29 29 H 1.09001 * 110.72129 * 259.97013 * 4 2 1 30 30 H 1.08994 * 110.72260 * 23.07433 * 4 2 1 31 31 H 1.09001 * 111.00605 * 82.66413 * 5 4 2 32 32 H 1.09003 * 111.00492 * 206.50987 * 5 4 2 33 33 H 1.08998 * 109.47343 * 296.96068 * 8 6 5 34 34 H 1.09004 * 109.46748 * 56.96022 * 8 6 5 35 35 H 1.09002 * 109.47423 * 176.95665 * 8 6 5 36 36 H 0.96998 * 119.99802 * 5.27459 * 12 10 9 37 37 H 1.09001 * 109.47071 * 300.00596 * 13 12 10 38 38 H 1.09004 * 109.47047 * 60.00040 * 13 12 10 39 39 H 1.08994 * 109.46934 * 60.00032 * 15 14 13 40 40 H 1.09003 * 109.47247 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47567 * 299.99979 * 15 14 13 42 42 H 1.09006 * 109.47070 * 60.00209 * 16 14 13 43 43 H 1.09003 * 109.47027 * 179.97438 * 16 14 13 44 44 H 1.08994 * 109.47041 * 300.00036 * 16 14 13 45 45 H 1.09006 * 109.47040 * 299.99697 * 17 14 13 46 46 H 1.08996 * 109.47419 * 59.99440 * 17 14 13 47 47 H 0.97002 * 119.99352 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2870 -1.5177 0.6958 6 6 2.8146 -1.8794 -0.7367 7 1 2.1892 -2.7719 -0.7147 8 6 4.0177 -2.0960 -1.6567 9 7 2.0301 -0.7140 -1.1839 10 6 1.8075 -0.3620 -2.4657 11 8 2.3327 -0.9859 -3.3675 12 7 1.0028 0.6817 -2.7479 13 6 0.6682 0.9934 -4.1397 14 6 -0.2520 2.2149 -4.1818 15 6 -1.5348 1.9140 -3.4040 16 6 0.4598 3.4118 -3.5481 17 6 -0.6019 2.5400 -5.6353 18 6 -1.5079 3.7436 -5.6768 19 1 -1.8048 4.2279 -4.7583 20 6 -1.9577 4.2265 -6.8874 21 7 -1.5957 3.6370 -8.0059 22 14 -3.0813 5.7179 -6.9389 23 1 -2.3904 6.8795 -6.3235 24 1 -3.4197 6.0342 -8.3497 25 1 -4.3264 5.4258 -6.1841 26 1 -0.3633 0.5194 0.8866 27 1 -0.3632 0.5082 -0.8932 28 1 -0.3632 -1.0276 0.0064 29 1 2.3529 -0.0459 2.0201 30 1 1.3040 -1.4436 1.6201 31 1 4.1664 -0.8744 0.6652 32 1 3.4811 -2.4144 1.2844 33 1 4.5820 -1.1674 -1.7418 34 1 4.6582 -2.8735 -1.2402 35 1 3.6701 -2.4017 -2.6436 36 1 0.6452 1.2265 -2.0295 37 1 1.5821 1.2081 -4.6937 38 1 0.1615 0.1405 -4.5913 39 1 -1.2859 1.6822 -2.3685 40 1 -2.1907 2.7842 -3.4344 41 1 -2.0420 1.0614 -3.8555 42 1 1.3736 3.6261 -4.1022 43 1 -0.1957 4.2821 -3.5785 44 1 0.7087 3.1799 -2.5126 45 1 0.3118 2.7543 -6.1898 46 1 -1.1091 1.6872 -6.0865 47 1 -1.9125 3.9765 -8.8576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358737856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:13 Heat of formation + Delta-G solvation = -47.018647 kcal Electronic energy + Delta-G solvation = -23612.825313 eV Core-core repulsion = 20408.952317 eV Total energy + Delta-G solvation = -3203.872997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52901 -38.14080 -36.83013 -34.00399 -32.57559 -31.96905 -31.25306 -28.52578 -27.06130 -26.49769 -26.05630 -24.18197 -23.22509 -22.02025 -21.15673 -19.62332 -18.17068 -17.25444 -16.71967 -16.27355 -15.37741 -14.94924 -14.50105 -14.41010 -14.17866 -13.78136 -13.58851 -13.35990 -13.20734 -13.06219 -12.84100 -12.61335 -12.23046 -12.03861 -12.00460 -11.87876 -11.50954 -11.13433 -11.11147 -11.03552 -10.97348 -10.89304 -10.82521 -10.60579 -10.36536 -10.23882 -9.84515 -9.66906 -9.16819 -8.91492 -8.81069 -8.35701 -8.33728 -5.98139 -3.99450 2.76149 3.32904 3.38360 3.39490 3.44894 4.05277 4.28888 4.45502 4.50054 4.61336 4.90908 5.01908 5.09573 5.27598 5.37064 5.37690 5.43936 5.50317 5.53332 5.56842 5.63245 5.67664 5.74948 5.76509 5.85528 6.01600 6.10363 6.17916 6.23344 6.29781 6.34055 6.44801 6.52146 6.64666 6.65737 6.87706 7.09013 7.09551 7.16835 7.25394 7.66422 7.79246 8.00591 8.22648 8.42580 8.88041 9.05150 9.63403 11.13314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033410 B = 0.003625 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.867255 B = 7722.577556 C = 8253.276824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.125 3.875 3 H 0.072 0.928 4 C -0.125 4.125 5 C -0.131 4.131 6 C 0.153 3.847 7 H 0.069 0.931 8 C -0.157 4.157 9 N -0.635 5.635 10 C 0.720 3.280 11 O -0.588 6.588 12 N -0.738 5.738 13 C 0.145 3.855 14 C -0.072 4.072 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.037 3.963 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.394 0.606 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.019 0.981 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 -8.656 20.202 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.021 3.979 3 H 0.090 0.910 4 C -0.163 4.163 5 C -0.169 4.169 6 C 0.049 3.951 7 H 0.087 0.913 8 C -0.215 4.215 9 N -0.375 5.375 10 C 0.422 3.578 11 O -0.466 6.466 12 N -0.395 5.395 13 C 0.022 3.978 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C 0.000 4.000 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.435 -9.075 19.211 22.510 hybrid contribution -0.882 1.166 0.217 1.478 sum 6.553 -7.909 19.429 21.977 Atomic orbital electron populations 1.22388 0.94930 1.02997 1.02810 1.21590 0.94294 0.96375 0.85655 0.91023 1.22652 0.97866 0.99535 0.96276 1.22916 0.97961 1.00844 0.95196 1.21695 0.92393 0.87917 0.93050 0.91335 1.22104 0.96510 1.01490 1.01408 1.47791 1.56213 1.29947 1.03529 1.15534 0.79826 0.81208 0.81244 1.90865 1.54649 1.56669 1.44462 1.45636 1.52041 1.31560 1.10263 1.21487 0.98814 0.97853 0.79651 1.20908 0.93510 0.92264 1.00594 1.21774 0.97844 1.02051 0.96671 1.21748 1.00405 0.98941 0.97213 1.19078 0.96772 0.96765 0.87432 1.21148 1.28969 1.12664 0.92204 0.92337 1.25013 0.96557 0.97027 0.95876 1.69961 1.45180 1.40722 0.97520 0.86712 0.81253 0.83422 0.76911 1.20342 1.21406 1.20340 0.91261 0.91580 0.91879 0.90153 0.90408 0.90554 0.89955 0.92709 0.92671 0.89698 0.76870 0.92006 0.92129 0.95431 0.91462 0.93346 0.93330 0.91466 0.95490 0.96306 0.96320 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.01 37.16 0.33 -1.24 16 2 C 0.13 1.19 3.13 -66.95 -0.21 0.98 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.13 -0.86 6.47 -24.90 -0.16 -1.02 16 5 C -0.13 -0.97 6.53 -24.47 -0.16 -1.13 16 6 C 0.15 1.65 3.78 -66.30 -0.25 1.40 16 7 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 8 C -0.16 -1.86 8.43 37.16 0.31 -1.55 16 9 N -0.63 -8.07 2.98 -161.10 -0.48 -8.55 16 10 C 0.72 11.94 8.11 -86.92 -0.71 11.23 16 11 O -0.59 -11.81 14.04 5.29 0.07 -11.73 16 12 N -0.74 -11.69 4.43 -65.23 -0.29 -11.98 16 13 C 0.15 2.70 4.57 -4.05 -0.02 2.68 16 14 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C -0.13 -2.27 8.05 37.15 0.30 -1.97 16 17 C 0.04 0.92 4.04 -27.88 -0.11 0.81 16 18 C -0.51 -13.65 7.65 -34.44 -0.26 -13.92 16 19 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 20 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 21 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.72 4.58 -51.93 -0.24 0.48 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.48 7.84 -51.93 -0.41 0.07 16 31 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.26 6.28 -51.93 -0.33 0.94 16 36 H 0.39 5.47 3.32 -40.82 -0.14 5.34 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.03 0.40 5.89 -51.93 -0.31 0.10 16 40 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 44 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -31.15 353.44 -8.69 -39.84 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.23 Total: 2.37 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.82 Total: -5.68 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.03 Total: -46.36 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.15 -8.69 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358737856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.176 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds