Wall clock time and date at job start Tue Mar 31 2020 06:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87080 * 2 1 4 4 C 1.54315 * 109.88213 * 238.98483 * 2 1 3 5 5 C 1.55156 * 102.94436 * 218.23501 * 4 2 1 6 6 C 1.54906 * 101.61451 * 35.48113 * 5 4 2 7 7 H 1.09001 * 110.37094 * 204.16995 * 6 5 4 8 8 C 1.53003 * 110.36682 * 81.85060 * 6 5 4 9 9 N 1.47017 * 110.01051 * 121.09571 * 2 1 3 10 10 C 1.34776 * 125.65312 * 298.49185 * 9 2 1 11 11 O 1.21588 * 119.99713 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00108 * 180.02562 * 10 9 2 13 13 C 1.46497 * 120.00061 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47325 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47724 * 300.00122 * 14 13 12 16 16 C 1.53004 * 109.46908 * 60.00499 * 14 13 12 17 17 C 1.53007 * 109.47088 * 179.97438 * 14 13 12 18 18 C 1.50706 * 109.47130 * 180.02562 * 17 14 13 19 19 H 1.08004 * 119.99836 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00072 * 180.02562 * 18 17 14 21 21 N 1.31514 * 119.99552 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00074 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47362 * 89.99834 * 22 20 18 24 24 H 1.48495 * 109.47140 * 210.00069 * 22 20 18 25 25 H 1.48501 * 109.47004 * 329.99976 * 22 20 18 26 26 H 1.08998 * 109.47104 * 179.56287 * 1 2 3 27 27 H 1.09007 * 109.47228 * 299.56417 * 1 2 3 28 28 H 1.09002 * 109.47232 * 59.56214 * 1 2 3 29 29 H 1.09001 * 110.72062 * 99.87103 * 4 2 1 30 30 H 1.09005 * 110.72207 * 336.60073 * 4 2 1 31 31 H 1.09002 * 111.00677 * 153.57697 * 5 4 2 32 32 H 1.09002 * 111.00564 * 277.38955 * 5 4 2 33 33 H 1.09002 * 109.47045 * 61.45221 * 8 6 5 34 34 H 1.09003 * 109.47519 * 181.45543 * 8 6 5 35 35 H 1.09003 * 109.47027 * 301.45424 * 8 6 5 36 36 H 0.96999 * 120.00163 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.47146 * 300.00090 * 13 12 10 38 38 H 1.09008 * 109.47342 * 59.99571 * 13 12 10 39 39 H 1.09000 * 109.47074 * 59.99473 * 15 14 13 40 40 H 1.08994 * 109.47721 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.46988 * 300.00421 * 15 14 13 42 42 H 1.08995 * 109.47317 * 59.99440 * 16 14 13 43 43 H 1.09003 * 109.46981 * 179.97438 * 16 14 13 44 44 H 1.09003 * 109.47002 * 299.99847 * 16 14 13 45 45 H 1.08999 * 109.47183 * 299.99765 * 17 14 13 46 46 H 1.08996 * 109.47075 * 60.00528 * 17 14 13 47 47 H 0.97001 * 119.99431 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 6 3.2900 -1.5101 -0.6954 6 6 2.8206 -1.8769 0.7345 7 1 3.6793 -2.0294 1.3883 8 6 1.9452 -3.1313 0.7022 9 7 2.0331 -0.7135 1.1829 10 6 1.8110 -0.3628 2.4652 11 8 1.1434 0.6210 2.7195 12 7 2.3299 -1.1021 3.4655 13 6 2.0890 -0.7207 4.8593 14 6 2.7828 -1.7187 5.7884 15 6 2.2238 -3.1209 5.5396 16 6 4.2874 -1.7128 5.5110 17 6 2.5317 -1.3199 7.2441 18 6 3.2156 -2.3026 8.1594 19 1 3.7732 -3.1292 7.7443 20 6 3.1286 -2.1471 9.5266 21 7 3.7250 -3.0050 10.3252 22 14 2.1624 -0.7187 10.2445 23 1 0.7505 -1.1301 10.4510 24 1 2.7580 -0.3225 11.5458 25 1 2.2105 0.4322 9.3072 26 1 -0.3633 -1.0276 -0.0078 27 1 -0.3634 0.5071 0.8939 28 1 -0.3634 0.5206 -0.8860 29 1 2.3503 -0.0432 -2.0211 30 1 1.3061 -1.4456 -1.6186 31 1 3.4887 -2.4061 -1.2833 32 1 4.1666 -0.8630 -0.6649 33 1 2.5253 -3.9694 0.3158 34 1 1.6022 -3.3612 1.7110 35 1 1.0843 -2.9571 0.0567 36 1 2.8629 -1.8868 3.2627 37 1 2.4870 0.2785 5.0365 38 1 1.0170 -0.7251 5.0572 39 1 2.4030 -3.4048 4.5026 40 1 2.7183 -3.8320 6.2013 41 1 1.1519 -3.1251 5.7373 42 1 4.6857 -0.7138 5.6882 43 1 4.7818 -2.4235 6.1733 44 1 4.4667 -1.9966 4.4739 45 1 2.9304 -0.3210 7.4211 46 1 1.4599 -1.3237 7.4422 47 1 3.6641 -2.8953 11.2870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358737858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:15 Heat of formation + Delta-G solvation = -49.690835 kcal Electronic energy + Delta-G solvation = -23586.173962 eV Core-core repulsion = 20382.185090 eV Total energy + Delta-G solvation = -3203.988871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56302 -38.34468 -36.93858 -33.81826 -32.46742 -32.06385 -31.33237 -28.68408 -27.76151 -26.53947 -26.08981 -24.53916 -23.04061 -21.87671 -20.88467 -19.53095 -18.55178 -17.54018 -16.79439 -16.30054 -15.45661 -15.05247 -14.51385 -14.18613 -14.04658 -13.95520 -13.77072 -13.49989 -13.33573 -12.90089 -12.73035 -12.67998 -12.55588 -12.33032 -12.25626 -11.95235 -11.75405 -11.22536 -11.13902 -11.07538 -10.99545 -10.95952 -10.79884 -10.59704 -10.45069 -9.96545 -9.94189 -9.72754 -9.48538 -8.97508 -8.91711 -8.52067 -8.43539 -6.02943 -4.00014 2.68970 3.33222 3.38648 3.41116 3.45848 4.01650 4.22244 4.43281 4.47364 4.61434 4.83408 5.00173 5.03563 5.25824 5.30049 5.31775 5.40078 5.42414 5.45787 5.49482 5.57582 5.64082 5.66924 5.68957 5.75486 5.95915 5.99981 6.14351 6.15101 6.17968 6.20909 6.35812 6.38737 6.54972 6.61506 6.77970 6.95497 7.03127 7.06666 7.17560 7.22990 7.39362 7.79735 8.15094 8.54259 8.79921 9.01101 9.59999 11.09814 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031528 B = 0.003755 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.898836 B = 7454.609042 C = 7932.869961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.071 0.929 4 C -0.128 4.128 5 C -0.127 4.127 6 C 0.124 3.876 7 H 0.080 0.920 8 C -0.164 4.164 9 N -0.632 5.632 10 C 0.720 3.280 11 O -0.592 6.592 12 N -0.735 5.735 13 C 0.145 3.855 14 C -0.063 4.063 15 C -0.127 4.127 16 C -0.127 4.127 17 C -0.002 4.002 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 1.169 -24.217 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.165 4.165 6 C 0.019 3.981 7 H 0.098 0.902 8 C -0.222 4.222 9 N -0.371 5.371 10 C 0.422 3.578 11 O -0.470 6.470 12 N -0.391 5.391 13 C 0.021 3.979 14 C -0.063 4.063 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.039 4.039 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.544 5.544 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.230 0.770 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.290 1.899 -23.710 23.896 hybrid contribution -0.263 0.291 0.504 0.639 sum -2.553 2.190 -23.206 23.448 Atomic orbital electron populations 1.22175 0.95032 1.02039 1.02869 1.21303 0.94348 0.95896 0.83480 0.91043 1.22733 0.97707 0.99550 0.96572 1.22773 0.97987 1.00932 0.94803 1.21836 0.93667 0.86511 0.96037 0.90211 1.22204 1.00404 0.96783 1.02832 1.47779 1.56083 1.29411 1.03857 1.15508 0.80179 0.82869 0.79268 1.90893 1.44829 1.28735 1.82549 1.45362 1.56695 1.31169 1.05877 1.21490 1.00205 0.98511 0.77700 1.20694 0.94945 0.94192 0.96494 1.21757 1.00736 0.97008 0.98933 1.21759 0.95611 1.02210 0.98858 1.19588 0.96688 0.97339 0.90332 1.21083 1.32194 1.11353 0.90177 0.90412 1.24993 0.95279 0.95890 0.97268 1.69905 1.44312 1.36507 1.03642 0.86859 0.80469 0.83855 0.78602 1.20376 1.21524 1.18954 0.92763 0.90919 0.92117 0.90148 0.90443 0.89826 0.90523 0.91434 0.92075 0.92050 0.77040 0.92085 0.92094 0.95187 0.90929 0.93419 0.93396 0.90909 0.95214 0.96331 0.96788 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.12 37.16 0.34 -1.38 16 2 C 0.15 1.59 3.45 -66.96 -0.23 1.36 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -0.87 6.10 -24.90 -0.15 -1.02 16 5 C -0.13 -0.84 6.56 -24.58 -0.16 -1.00 16 6 C 0.12 1.10 3.02 -66.39 -0.20 0.90 16 7 H 0.08 0.71 7.30 -51.93 -0.38 0.33 16 8 C -0.16 -1.34 9.49 37.16 0.35 -0.99 16 9 N -0.63 -7.67 2.72 -161.21 -0.44 -8.11 16 10 C 0.72 11.53 8.28 -86.92 -0.72 10.81 16 11 O -0.59 -11.72 15.37 5.29 0.08 -11.64 16 12 N -0.74 -11.14 4.92 -65.23 -0.32 -11.46 16 13 C 0.14 2.54 4.56 -4.05 -0.02 2.52 16 14 C -0.06 -1.17 0.54 -154.51 -0.08 -1.25 16 15 C -0.13 -2.23 8.05 37.15 0.30 -1.93 16 16 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 17 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 18 C -0.51 -13.72 8.20 -34.44 -0.28 -14.00 16 19 H 0.08 2.21 5.92 -52.48 -0.31 1.89 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 21 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 22 Si 0.87 21.67 27.47 -169.99 -4.67 17.01 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.00 6.86 -51.92 -0.36 0.65 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.48 7.47 -51.93 -0.39 0.09 16 31 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.50 7.47 -51.93 -0.39 0.11 16 36 H 0.39 5.20 4.64 -40.82 -0.19 5.01 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.43 6.62 -51.93 -0.34 1.08 16 44 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -31.76 356.49 -8.36 -40.11 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.41 Total: 1.51 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.74 Total: -6.25 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.01 Total: -46.12 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.76 -8.36 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358737858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.578 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds