Wall clock time and date at job start Tue Mar 31 2020 06:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.32905 * 2 1 4 4 C 1.54916 * 110.36822 * 237.76449 * 2 1 3 5 5 C 1.55269 * 101.52865 * 204.23164 * 4 2 1 6 6 C 1.54327 * 103.00997 * 35.36171 * 5 4 2 7 7 H 1.09004 * 110.00822 * 97.37334 * 6 5 4 8 8 C 1.52998 * 109.88565 * 218.46804 * 6 5 4 9 9 N 1.47022 * 107.26576 * 337.88392 * 6 5 4 10 10 C 1.34779 * 125.64476 * 178.91789 * 9 6 5 11 11 O 1.21587 * 120.00215 * 180.02562 * 10 9 6 12 12 N 1.34776 * 120.00110 * 0.02562 * 10 9 6 13 13 C 1.46501 * 120.00275 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47083 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47511 * 299.99977 * 14 13 12 16 16 C 1.53003 * 109.47215 * 60.00348 * 14 13 12 17 17 C 1.53005 * 109.46820 * 179.97438 * 14 13 12 18 18 C 1.50707 * 109.47009 * 179.97438 * 17 14 13 19 19 H 1.08003 * 119.99872 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99608 * 179.97438 * 18 17 14 21 21 N 1.31508 * 120.00639 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99570 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46955 * 90.00134 * 22 20 18 24 24 H 1.48499 * 109.47192 * 210.00421 * 22 20 18 25 25 H 1.48504 * 109.47094 * 330.00461 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.29630 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.29821 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.29802 * 1 2 3 29 29 H 1.08999 * 111.00065 * 322.22791 * 4 2 1 30 30 H 1.09006 * 110.99992 * 86.07590 * 4 2 1 31 31 H 1.09005 * 110.62653 * 277.00677 * 5 4 2 32 32 H 1.08997 * 110.75577 * 153.77877 * 5 4 2 33 33 H 1.08994 * 109.47210 * 177.80720 * 8 6 5 34 34 H 1.09008 * 109.46853 * 297.80917 * 8 6 5 35 35 H 1.09000 * 109.47063 * 57.80158 * 8 6 5 36 36 H 0.97004 * 120.00029 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47011 * 300.00069 * 13 12 10 38 38 H 1.08998 * 109.46834 * 60.00215 * 13 12 10 39 39 H 1.08999 * 109.47009 * 59.99822 * 15 14 13 40 40 H 1.08993 * 109.47263 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46693 * 300.00316 * 15 14 13 42 42 H 1.08995 * 109.47039 * 59.99905 * 16 14 13 43 43 H 1.09002 * 109.47187 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.46683 * 299.99797 * 16 14 13 45 45 H 1.08995 * 109.47603 * 300.00198 * 17 14 13 46 46 H 1.08998 * 109.46885 * 60.00400 * 17 14 13 47 47 H 0.96996 * 120.00196 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0692 -0.7747 -1.2284 5 6 3.4777 -1.2004 -0.7330 6 6 3.2494 -1.4760 0.7682 7 1 3.1024 -2.5434 0.9333 8 6 4.4525 -0.9855 1.5762 9 7 2.0431 -0.7372 1.1689 10 6 1.4967 -0.7347 2.4010 11 8 0.4930 -0.0842 2.6195 12 7 2.0628 -1.4533 3.3907 13 6 1.4691 -1.4502 4.7301 14 6 2.2992 -2.3395 5.6579 15 6 2.3186 -3.7687 5.1120 16 6 3.7301 -1.8029 5.7331 17 6 1.6795 -2.3357 7.0568 18 6 2.4968 -3.2122 7.9707 19 1 3.3711 -3.7206 7.5916 20 6 2.1291 -3.3640 9.2908 21 7 1.0649 -2.7444 9.7524 22 14 3.1425 -4.4498 10.4236 23 1 4.2028 -3.6362 11.0710 24 1 2.2621 -5.0355 11.4661 25 1 3.7685 -5.5408 9.6342 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 -1.0276 -0.0126 28 1 -0.3634 0.5247 -0.8836 29 1 1.4511 -1.6465 -1.4425 30 1 2.1398 -0.1241 -2.1003 31 1 4.1945 -0.3910 -0.8719 32 1 3.8105 -2.1035 -1.2446 33 1 4.2676 -1.1479 2.6380 34 1 5.3426 -1.5374 1.2738 35 1 4.6045 0.0780 1.3922 36 1 2.8633 -1.9726 3.2163 37 1 1.4550 -0.4320 5.1188 38 1 0.4499 -1.8330 4.6766 39 1 2.7602 -3.7710 4.1155 40 1 2.9096 -4.4022 5.7732 41 1 1.2991 -4.1509 5.0584 42 1 3.7163 -0.7848 6.1221 43 1 4.3214 -2.4362 6.3945 44 1 4.1718 -1.8052 4.7366 45 1 1.6661 -1.3175 7.4456 46 1 0.6601 -2.7178 7.0036 47 1 0.8060 -2.8516 10.6810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358737862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:18 Heat of formation + Delta-G solvation = -47.699381 kcal Electronic energy + Delta-G solvation = -23605.226443 eV Core-core repulsion = 20401.323928 eV Total energy + Delta-G solvation = -3203.902515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53334 -38.14749 -36.82980 -34.00006 -32.58722 -31.97386 -31.25497 -28.52101 -27.06432 -26.49713 -26.05249 -24.18738 -23.23077 -22.02554 -21.15407 -19.61306 -18.17461 -17.25666 -16.72973 -16.27359 -15.41277 -14.92339 -14.50206 -14.41940 -14.16917 -13.77362 -13.61152 -13.36757 -13.19914 -13.06316 -12.84235 -12.60959 -12.25283 -12.04571 -12.01424 -11.86318 -11.51722 -11.14256 -11.11284 -11.03812 -10.99358 -10.89847 -10.81576 -10.61631 -10.36856 -10.22777 -9.84947 -9.64425 -9.17016 -8.90664 -8.81937 -8.36071 -8.34186 -5.98336 -3.99611 2.76140 3.31717 3.38720 3.40450 3.44929 4.05285 4.28529 4.45417 4.49883 4.61608 4.90323 5.02116 5.09226 5.27604 5.36870 5.37350 5.43812 5.49649 5.53336 5.56823 5.63811 5.67560 5.75035 5.76624 5.84951 6.01306 6.09315 6.17440 6.22163 6.29508 6.33783 6.44611 6.52996 6.64681 6.66352 6.87957 7.08953 7.09486 7.16612 7.24987 7.66526 7.79134 8.00457 8.22386 8.42458 8.87993 9.05200 9.63375 11.13144 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033066 B = 0.003624 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.587796 B = 7724.003824 C = 8243.123925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.069 0.931 4 C -0.131 4.131 5 C -0.125 4.125 6 C 0.125 3.875 7 H 0.072 0.928 8 C -0.172 4.172 9 N -0.635 5.635 10 C 0.720 3.280 11 O -0.589 6.589 12 N -0.737 5.737 13 C 0.145 3.855 14 C -0.072 4.072 15 C -0.126 4.126 16 C -0.126 4.126 17 C 0.037 3.963 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 2.632 -22.154 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.087 0.913 4 C -0.169 4.169 5 C -0.163 4.163 6 C 0.021 3.979 7 H 0.090 0.910 8 C -0.230 4.230 9 N -0.374 5.374 10 C 0.422 3.578 11 O -0.467 6.467 12 N -0.394 5.394 13 C 0.022 3.978 14 C -0.073 4.073 15 C -0.183 4.183 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.088 3.126 -21.707 22.513 hybrid contribution 0.955 -0.874 0.691 1.467 sum 6.042 2.252 -21.016 21.983 Atomic orbital electron populations 1.22186 0.93963 1.02603 1.03502 1.21647 0.95131 0.94832 0.83392 0.91321 1.22909 0.96144 1.00693 0.97178 1.22674 0.97589 1.02355 0.93681 1.21590 0.85362 0.96121 0.94869 0.90987 1.22364 0.97585 1.02198 1.00892 1.47781 1.28927 1.52028 1.08706 1.15530 0.82659 0.80474 0.79128 1.90842 1.26432 1.47925 1.81526 1.45615 1.31961 1.51417 1.10398 1.21489 0.96808 1.00354 0.79154 1.20912 0.95167 0.93552 0.97647 1.21749 1.01483 0.97014 0.98061 1.21767 0.96414 1.01200 0.98942 1.19085 0.95877 0.97484 0.87643 1.21186 1.11247 1.28121 0.94354 0.92282 1.25009 0.95160 0.96013 0.98302 1.69962 1.24974 1.43129 1.15307 0.86655 0.80093 0.80833 0.80759 1.20790 1.21349 1.19958 0.89079 0.92847 0.92562 0.90545 0.89965 0.90406 0.90113 0.91718 0.91230 0.91902 0.76920 0.92035 0.92073 0.95489 0.91455 0.93345 0.93334 0.91463 0.95457 0.96305 0.96305 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.70 37.16 0.32 -1.63 16 2 C 0.15 1.66 3.76 -66.42 -0.25 1.41 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.13 -0.97 6.51 -24.52 -0.16 -1.13 16 5 C -0.13 -0.86 6.48 -24.83 -0.16 -1.02 16 6 C 0.12 1.18 3.08 -66.95 -0.21 0.98 16 7 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.17 -1.56 9.02 37.16 0.34 -1.23 16 9 N -0.63 -8.06 2.98 -161.23 -0.48 -8.54 16 10 C 0.72 11.93 8.06 -86.92 -0.70 11.23 16 11 O -0.59 -11.81 14.00 5.29 0.07 -11.73 16 12 N -0.74 -11.67 4.48 -65.23 -0.29 -11.96 16 13 C 0.15 2.70 4.56 -4.04 -0.02 2.68 16 14 C -0.07 -1.40 0.54 -154.51 -0.08 -1.49 16 15 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 16 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 17 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 18 C -0.51 -13.62 7.65 -34.44 -0.26 -13.89 16 19 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.09 1.38 5.89 -51.93 -0.31 1.08 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.48 7.84 -51.93 -0.41 0.07 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.70 5.06 -51.93 -0.26 0.43 16 34 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 36 H 0.39 5.47 3.34 -40.82 -0.14 5.33 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 40 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 44 H 0.03 0.40 6.18 -51.93 -0.32 0.08 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -31.14 353.99 -8.69 -39.83 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.25 Total: 2.39 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.80 Total: -5.73 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.04 Total: -46.32 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.14 -8.69 -39.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358737862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.870 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds