Wall clock time and date at job start Tue Mar 31 2020 06:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.32905 * 2 1 4 4 C 1.54916 * 110.36822 * 237.76449 * 2 1 3 5 5 C 1.55269 * 101.52865 * 204.23164 * 4 2 1 6 6 C 1.54327 * 103.00997 * 35.36171 * 5 4 2 7 7 H 1.09004 * 110.00822 * 97.37334 * 6 5 4 8 8 C 1.52998 * 109.88565 * 218.46804 * 6 5 4 9 9 N 1.47022 * 107.26576 * 337.88392 * 6 5 4 10 10 C 1.34779 * 125.64476 * 178.91789 * 9 6 5 11 11 O 1.21587 * 120.00215 * 180.02562 * 10 9 6 12 12 N 1.34776 * 120.00110 * 0.02562 * 10 9 6 13 13 C 1.46501 * 120.00275 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47083 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47511 * 299.99977 * 14 13 12 16 16 C 1.53003 * 109.47215 * 60.00348 * 14 13 12 17 17 C 1.53005 * 109.46820 * 179.97438 * 14 13 12 18 18 C 1.50707 * 109.47009 * 179.97438 * 17 14 13 19 19 H 1.08003 * 119.99872 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99608 * 179.97438 * 18 17 14 21 21 N 1.31508 * 120.00639 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99570 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46955 * 90.00134 * 22 20 18 24 24 H 1.48499 * 109.47192 * 210.00421 * 22 20 18 25 25 H 1.48504 * 109.47094 * 330.00461 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.29630 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.29821 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.29802 * 1 2 3 29 29 H 1.08999 * 111.00065 * 322.22791 * 4 2 1 30 30 H 1.09006 * 110.99992 * 86.07590 * 4 2 1 31 31 H 1.09005 * 110.62653 * 277.00677 * 5 4 2 32 32 H 1.08997 * 110.75577 * 153.77877 * 5 4 2 33 33 H 1.08994 * 109.47210 * 177.80720 * 8 6 5 34 34 H 1.09008 * 109.46853 * 297.80917 * 8 6 5 35 35 H 1.09000 * 109.47063 * 57.80158 * 8 6 5 36 36 H 0.97004 * 120.00029 * 359.97438 * 12 10 9 37 37 H 1.09001 * 109.47011 * 300.00069 * 13 12 10 38 38 H 1.08998 * 109.46834 * 60.00215 * 13 12 10 39 39 H 1.08999 * 109.47009 * 59.99822 * 15 14 13 40 40 H 1.08993 * 109.47263 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46693 * 300.00316 * 15 14 13 42 42 H 1.08995 * 109.47039 * 59.99905 * 16 14 13 43 43 H 1.09002 * 109.47187 * 179.97438 * 16 14 13 44 44 H 1.08999 * 109.46683 * 299.99797 * 16 14 13 45 45 H 1.08995 * 109.47603 * 300.00198 * 17 14 13 46 46 H 1.08998 * 109.46885 * 60.00400 * 17 14 13 47 47 H 0.96996 * 120.00196 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0692 -0.7747 -1.2284 5 6 3.4777 -1.2004 -0.7330 6 6 3.2494 -1.4760 0.7682 7 1 3.1024 -2.5434 0.9333 8 6 4.4525 -0.9855 1.5762 9 7 2.0431 -0.7372 1.1689 10 6 1.4967 -0.7347 2.4010 11 8 0.4930 -0.0842 2.6195 12 7 2.0628 -1.4533 3.3907 13 6 1.4691 -1.4502 4.7301 14 6 2.2992 -2.3395 5.6579 15 6 2.3186 -3.7687 5.1120 16 6 3.7301 -1.8029 5.7331 17 6 1.6795 -2.3357 7.0568 18 6 2.4968 -3.2122 7.9707 19 1 3.3711 -3.7206 7.5916 20 6 2.1291 -3.3640 9.2908 21 7 1.0649 -2.7444 9.7524 22 14 3.1425 -4.4498 10.4236 23 1 4.2028 -3.6362 11.0710 24 1 2.2621 -5.0355 11.4661 25 1 3.7685 -5.5408 9.6342 26 1 -0.3633 0.5029 0.8962 27 1 -0.3633 -1.0276 -0.0126 28 1 -0.3634 0.5247 -0.8836 29 1 1.4511 -1.6465 -1.4425 30 1 2.1398 -0.1241 -2.1003 31 1 4.1945 -0.3910 -0.8719 32 1 3.8105 -2.1035 -1.2446 33 1 4.2676 -1.1479 2.6380 34 1 5.3426 -1.5374 1.2738 35 1 4.6045 0.0780 1.3922 36 1 2.8633 -1.9726 3.2163 37 1 1.4550 -0.4320 5.1188 38 1 0.4499 -1.8330 4.6766 39 1 2.7602 -3.7710 4.1155 40 1 2.9096 -4.4022 5.7732 41 1 1.2991 -4.1509 5.0584 42 1 3.7163 -0.7848 6.1221 43 1 4.3214 -2.4362 6.3945 44 1 4.1718 -1.8052 4.7366 45 1 1.6661 -1.3175 7.4456 46 1 0.6601 -2.7178 7.0036 47 1 0.8060 -2.8516 10.6810 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358737862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:17 Heat of formation + Delta-G solvation = -65.918015 kcal Electronic energy + Delta-G solvation = -23606.016463 eV Core-core repulsion = 20401.323928 eV Total energy + Delta-G solvation = -3204.692535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63428 -39.39534 -38.24895 -35.45228 -34.25661 -33.12037 -32.29246 -29.37930 -29.00099 -27.99173 -27.54186 -25.02756 -24.88765 -23.26303 -21.89426 -20.88948 -19.66870 -18.41136 -18.30359 -17.66299 -16.76854 -16.43937 -16.08739 -15.70683 -15.21542 -15.00358 -14.79926 -14.58805 -14.31974 -14.08415 -14.03253 -13.94132 -13.78942 -13.47926 -12.98564 -12.86004 -12.72777 -12.70180 -12.58931 -12.36949 -12.32475 -12.21763 -11.97312 -11.84416 -11.66040 -11.57509 -11.54576 -11.08613 -10.89931 -10.81815 -10.50952 -10.16239 -9.45997 -8.13251 -6.21417 1.43118 1.43810 1.54120 1.64677 2.16576 2.44851 2.99958 3.21159 3.62715 3.72734 3.96070 3.99467 4.07688 4.12588 4.19295 4.33663 4.35489 4.48998 4.65995 4.67633 4.70357 4.73422 4.79878 4.82911 4.87964 4.94640 5.00618 5.08594 5.09428 5.16355 5.17039 5.28620 5.30818 5.36090 5.41751 5.48341 5.48879 5.52766 5.58599 5.64542 5.79245 5.89804 6.12600 6.30947 6.93165 7.03811 7.46362 7.61461 8.99437 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033066 B = 0.003624 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.587796 B = 7724.003824 C = 8243.123925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.070 0.930 4 C -0.120 4.120 5 C -0.115 4.115 6 C 0.114 3.886 7 H 0.077 0.923 8 C -0.169 4.169 9 N -0.632 5.632 10 C 0.712 3.288 11 O -0.632 6.632 12 N -0.726 5.726 13 C 0.160 3.840 14 C -0.064 4.064 15 C -0.119 4.119 16 C -0.119 4.119 17 C 0.041 3.959 18 C -0.513 4.513 19 H 0.074 0.926 20 C -0.005 4.005 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.258 1.258 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.406 0.594 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.059 0.941 44 H 0.064 0.936 45 H -0.014 1.014 46 H -0.014 1.014 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 1.331 -24.883 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.153 4.153 6 C 0.011 3.989 7 H 0.095 0.905 8 C -0.227 4.227 9 N -0.370 5.370 10 C 0.414 3.586 11 O -0.514 6.514 12 N -0.384 5.384 13 C 0.035 3.965 14 C -0.064 4.064 15 C -0.177 4.177 16 C -0.176 4.176 17 C 0.004 3.996 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.182 1.182 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.004 0.996 46 H 0.004 0.996 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.076 1.805 -24.497 25.857 hybrid contribution -0.005 -0.406 1.470 1.525 sum 8.071 1.399 -23.027 24.440 Atomic orbital electron populations 1.22091 0.95185 1.01707 1.02760 1.21930 0.94325 0.95561 0.84298 0.91180 1.22883 0.96226 1.00612 0.96051 1.22700 0.97325 1.03943 0.91312 1.21938 0.83948 0.95960 0.97035 0.90473 1.22347 0.98404 1.02417 0.99553 1.47885 1.29715 1.51783 1.07621 1.15747 0.82378 0.80169 0.80307 1.90827 1.28435 1.49601 1.82581 1.45305 1.32193 1.51758 1.09151 1.21061 0.95922 0.98827 0.80649 1.20711 0.95903 0.95217 0.94592 1.21669 1.01066 0.95131 0.99785 1.21685 0.94900 1.00117 1.00947 1.18956 0.94576 0.95060 0.91048 1.21584 1.11366 1.27593 0.94606 0.90819 1.25960 0.96313 0.97601 1.00338 1.70125 1.27091 1.45134 1.15677 0.85523 0.78340 0.79186 0.78464 1.20131 1.21609 1.18227 0.93012 0.93833 0.89956 0.90485 0.87426 0.89165 0.87731 0.93620 0.88558 0.92296 0.75462 0.94029 0.94083 0.91776 0.92241 0.94443 0.94451 0.92228 0.91712 0.99593 0.99600 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.70 71.98 0.63 -3.12 16 2 C 0.14 2.83 3.76 45.47 0.17 3.00 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.12 -1.34 6.51 32.03 0.21 -1.13 16 5 C -0.12 -1.06 6.48 31.82 0.21 -0.85 16 6 C 0.11 1.79 3.08 45.34 0.14 1.93 16 7 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 8 C -0.17 -2.51 9.02 71.98 0.65 -1.86 16 9 N -0.63 -15.22 2.98 -782.28 -2.33 -17.56 16 10 C 0.71 23.76 8.06 179.05 1.44 25.21 16 11 O -0.63 -26.59 14.00 -3.99 -0.06 -26.65 16 12 N -0.73 -22.75 4.48 -478.54 -2.14 -24.89 16 13 C 0.16 6.19 4.56 86.38 0.39 6.58 16 14 C -0.06 -2.50 0.54 -52.18 -0.03 -2.53 16 15 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 16 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 17 C 0.04 2.14 4.04 29.85 0.12 2.26 16 18 C -0.51 -27.75 7.65 25.60 0.20 -27.55 16 19 H 0.07 3.70 5.68 -2.91 -0.02 3.69 16 20 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 21 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 22 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 26 H 0.05 1.65 5.89 -2.39 -0.01 1.63 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 30 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.09 0.66 7.84 -2.38 -0.02 0.64 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.04 0.85 5.06 -2.39 -0.01 0.84 16 34 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 36 H 0.41 10.47 3.34 -92.71 -0.31 10.16 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.74 6.86 -2.39 -0.02 1.73 16 40 H 0.06 2.17 6.62 -2.39 -0.02 2.16 16 41 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 44 H 0.06 1.75 6.18 -2.39 -0.01 1.73 16 45 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 46 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -71.83 353.99 4.15 -67.68 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.63 Total: 18.09 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.75 Total: -5.03 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -4.19 Total: -99.84 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.06 Total: -26.65 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -71.83 4.15 -67.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358737862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.758 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds