Wall clock time and date at job start Tue Mar 31 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46459 * 2 1 4 4 C 1.53039 * 109.46345 * 240.02112 * 2 1 3 5 5 C 1.53123 * 109.27762 * 180.79438 * 4 2 1 6 6 C 1.53118 * 109.15241 * 57.67353 * 5 4 2 7 7 C 1.53042 * 109.27636 * 302.33383 * 6 5 4 8 8 N 1.46850 * 109.52020 * 59.18402 * 7 6 5 9 9 C 1.46901 * 110.99906 * 174.15824 * 8 7 6 10 10 C 1.52999 * 109.47230 * 289.65119 * 9 8 7 11 11 C 1.53002 * 109.47149 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47162 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99936 * 180.02562 * 12 11 10 14 14 O 1.21270 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99719 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.46944 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47329 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99728 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00435 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00079 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00362 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47290 * 59.99679 * 21 19 17 23 23 H 1.48499 * 109.47311 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47030 * 299.99600 * 21 19 17 25 25 H 1.09001 * 109.47188 * 307.33584 * 1 2 3 26 26 H 1.08998 * 109.46989 * 67.33336 * 1 2 3 27 27 H 1.09002 * 109.47439 * 187.33356 * 1 2 3 28 28 H 1.09003 * 109.50176 * 300.74192 * 4 2 1 29 29 H 1.08997 * 109.50310 * 60.86458 * 4 2 1 30 30 H 1.08999 * 109.52932 * 297.76331 * 5 4 2 31 31 H 1.09001 * 109.51771 * 177.56654 * 5 4 2 32 32 H 1.08996 * 109.50617 * 182.39897 * 6 5 4 33 33 H 1.08996 * 109.53718 * 62.29721 * 6 5 4 34 34 H 1.08992 * 109.46763 * 299.16944 * 7 6 5 35 35 H 1.09001 * 109.45386 * 179.19106 * 7 6 5 36 36 H 1.09000 * 109.46983 * 49.65825 * 9 8 7 37 37 H 1.09007 * 109.46909 * 169.65356 * 9 8 7 38 38 H 1.08994 * 109.47056 * 300.00447 * 10 9 8 39 39 H 1.09007 * 109.46981 * 60.00281 * 10 9 8 40 40 H 1.09003 * 109.46917 * 300.00375 * 11 10 9 41 41 H 1.08997 * 109.46697 * 60.00362 * 11 10 9 42 42 H 0.97001 * 119.99627 * 0.02562 * 12 11 10 43 43 H 1.08994 * 109.47029 * 300.00327 * 15 13 12 44 44 H 1.08996 * 109.46907 * 59.99920 * 15 13 12 45 45 H 1.09000 * 109.47217 * 300.00641 * 16 15 13 46 46 H 1.09007 * 109.46756 * 60.00222 * 16 15 13 47 47 H 0.96997 * 120.00459 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5710 -0.7359 -1.2356 6 6 4.0548 -1.4188 0.0466 7 6 3.4865 -0.6777 1.2591 8 7 2.0193 -0.6918 1.1993 9 6 1.4373 -0.1108 2.4166 10 6 1.6688 -1.0585 3.5952 11 6 1.0631 -0.4530 4.8631 12 7 1.2853 -1.3601 5.9917 13 6 0.8344 -1.0322 7.2188 14 8 0.2452 0.0141 7.3886 15 6 1.0625 -1.9657 8.3797 16 6 0.4570 -1.3601 9.6476 17 6 0.6845 -2.2938 10.8084 18 1 1.2089 -3.2258 10.6570 19 6 0.2232 -1.9584 12.0636 20 7 -0.4150 -0.8234 12.2481 21 14 0.5058 -3.1155 13.5026 22 1 1.9642 -3.3155 13.6980 23 1 -0.0820 -2.5278 14.7332 24 1 -0.1397 -4.4228 13.2207 25 1 -0.3633 0.6233 0.8171 26 1 -0.3633 0.3960 -0.9483 27 1 -0.3634 -1.0193 0.1312 28 1 1.6659 -1.7449 -1.2574 29 1 1.6895 -0.1984 -2.1399 30 1 3.9456 0.2872 -1.2672 31 1 3.9379 -1.2861 -2.1020 32 1 5.1438 -1.3947 0.0831 33 1 3.7130 -2.4537 0.0596 34 1 3.8403 0.3531 1.2533 35 1 3.8175 -1.1702 2.1734 36 1 1.9110 0.8489 2.6234 37 1 0.3667 0.0359 2.2731 38 1 1.1951 -2.0181 3.3882 39 1 2.7393 -1.2052 3.7386 40 1 1.5373 0.5065 5.0697 41 1 -0.0073 -0.3060 4.7199 42 1 1.7569 -2.1968 5.8558 43 1 0.5888 -2.9252 8.1728 44 1 2.1330 -2.1124 8.5230 45 1 0.9311 -0.4006 9.8542 46 1 -0.6136 -1.2131 9.5045 47 1 -0.7398 -0.5876 13.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359843356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:39 Heat of formation + Delta-G solvation = -67.106141 kcal Electronic energy + Delta-G solvation = -21802.631941 eV Core-core repulsion = 18597.887885 eV Total energy + Delta-G solvation = -3204.744056 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79124 -39.03368 -35.74979 -33.92313 -33.40863 -32.90614 -31.25150 -30.35995 -27.49561 -26.34423 -25.11949 -23.56040 -21.88964 -21.32307 -21.26760 -19.99214 -19.44298 -16.82420 -16.49908 -16.04664 -15.60172 -15.42927 -15.24805 -14.80984 -14.65383 -14.49206 -14.36007 -13.99499 -13.51269 -13.01819 -12.86415 -12.49888 -12.35479 -12.23274 -12.18020 -12.00580 -11.82832 -11.60293 -11.33233 -11.17582 -11.12744 -10.99473 -10.88411 -10.60621 -10.55504 -10.46662 -9.91691 -9.63129 -9.15115 -8.97693 -8.72843 -8.61502 -8.29120 -5.93361 -3.97793 3.31704 3.35641 3.36281 3.40839 3.42766 3.75053 4.38198 4.42439 4.49823 4.50221 4.67625 4.83093 4.92117 4.94612 5.03637 5.06845 5.15048 5.24910 5.29594 5.34845 5.41254 5.46572 5.51923 5.53317 5.55649 5.58992 5.62335 5.75256 5.77910 5.81313 5.88074 6.00202 6.04457 6.11775 6.27428 6.29133 6.75187 6.81523 6.84393 6.93811 7.77002 7.89864 7.95219 8.10435 8.41865 8.84047 9.10890 9.65472 11.17570 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043871 B = 0.002191 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.087495 B =12777.634463 C =13165.142070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 H 0.038 0.962 4 C -0.111 4.111 5 C -0.122 4.122 6 C -0.117 4.117 7 C 0.052 3.948 8 N -0.532 5.532 9 C 0.052 3.948 10 C -0.124 4.124 11 C 0.120 3.880 12 N -0.744 5.744 13 C 0.508 3.492 14 O -0.536 6.536 15 C -0.130 4.130 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.397 0.603 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -0.731 -29.442 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 H 0.056 0.944 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.076 4.076 8 N -0.258 5.258 9 C -0.076 4.076 10 C -0.162 4.162 11 C -0.005 4.005 12 N -0.399 5.399 13 C 0.297 3.703 14 O -0.412 6.412 15 C -0.170 4.170 16 C -0.001 4.001 17 C -0.566 4.566 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.231 0.769 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.042 0.958 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.882 -0.314 -29.202 30.004 hybrid contribution 0.673 -0.107 0.786 1.040 sum 7.555 -0.421 -28.416 29.406 Atomic orbital electron populations 1.21953 0.94262 1.02863 1.01745 1.21601 0.95410 0.95326 0.90370 0.94381 1.21633 0.95410 1.01515 0.96346 1.21592 0.95904 1.00593 0.97925 1.21584 0.99664 1.00318 0.93922 1.22146 0.87380 0.98884 0.99158 1.61934 1.07007 1.55115 1.01714 1.22111 1.00802 0.95629 0.89083 1.21753 1.01524 0.99999 0.92970 1.21161 1.00649 0.93529 0.85114 1.46184 1.61188 1.23893 1.08595 1.21557 0.77285 0.87772 0.83699 1.90661 1.40598 1.25621 1.84307 1.21861 1.02615 0.98064 0.94472 1.18893 0.96698 0.96070 0.88406 1.21194 1.36930 1.05036 0.93398 0.92653 1.25032 0.95243 0.95269 0.98905 1.69988 1.37854 1.22225 1.22805 0.86643 0.78397 0.81007 0.81816 1.20269 1.21309 1.20250 0.92317 0.92161 0.91465 0.90991 0.91694 0.92415 0.91838 0.91645 0.91025 0.95055 0.90343 0.94570 0.89748 0.90449 0.91462 0.92149 0.91908 0.76945 0.90258 0.90304 0.95863 0.95841 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.56 37.16 0.32 -0.72 16 2 C 0.08 0.61 2.44 -67.72 -0.17 0.44 16 3 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 4 C -0.11 -0.72 5.37 -26.65 -0.14 -0.86 16 5 C -0.12 -0.75 6.00 -26.61 -0.16 -0.91 16 6 C -0.12 -0.77 6.09 -26.65 -0.16 -0.93 16 7 C 0.05 0.40 5.30 -3.83 -0.02 0.38 16 8 N -0.53 -4.40 4.46 -226.68 -1.01 -5.41 16 9 C 0.05 0.45 4.75 -3.82 -0.02 0.43 16 10 C -0.12 -1.14 5.35 -26.73 -0.14 -1.28 16 11 C 0.12 1.50 5.67 -4.04 -0.02 1.48 16 12 N -0.74 -10.65 5.56 -60.30 -0.33 -10.99 16 13 C 0.51 10.05 7.83 -10.98 -0.09 9.96 16 14 O -0.54 -13.03 15.98 5.57 0.09 -12.94 16 15 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 16 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 17 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.76 13.29 55.43 0.74 -27.03 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.06 0.42 6.46 -51.93 -0.34 0.08 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.60 6.42 -51.93 -0.33 0.27 16 36 H 0.04 0.33 8.07 -51.93 -0.42 -0.09 16 37 H 0.08 0.72 5.61 -51.93 -0.29 0.43 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.59 6.59 -51.93 -0.34 0.24 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -33.90 367.99 -10.08 -43.98 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.79 Total: -2.14 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.29 Total: -7.88 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.61 Total: -43.42 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.90 -10.08 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359843356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.130 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds