Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46459 * 2 1 4 4 C 1.53039 * 109.46345 * 240.02112 * 2 1 3 5 5 C 1.53123 * 109.27762 * 180.79438 * 4 2 1 6 6 C 1.53118 * 109.15241 * 57.67353 * 5 4 2 7 7 C 1.53042 * 109.27636 * 302.33383 * 6 5 4 8 8 N 1.46850 * 109.52020 * 59.18402 * 7 6 5 9 9 C 1.46901 * 110.99906 * 174.15824 * 8 7 6 10 10 C 1.52999 * 109.47230 * 289.65119 * 9 8 7 11 11 C 1.53002 * 109.47149 * 179.97438 * 10 9 8 12 12 N 1.46496 * 109.47162 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99936 * 180.02562 * 12 11 10 14 14 O 1.21270 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99719 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.46944 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47329 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99728 * 0.02562 * 17 16 15 19 19 C 1.37868 * 120.00435 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00079 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00362 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47290 * 59.99679 * 21 19 17 23 23 H 1.48499 * 109.47311 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47030 * 299.99600 * 21 19 17 25 25 H 1.09001 * 109.47188 * 307.33584 * 1 2 3 26 26 H 1.08998 * 109.46989 * 67.33336 * 1 2 3 27 27 H 1.09002 * 109.47439 * 187.33356 * 1 2 3 28 28 H 1.09003 * 109.50176 * 300.74192 * 4 2 1 29 29 H 1.08997 * 109.50310 * 60.86458 * 4 2 1 30 30 H 1.08999 * 109.52932 * 297.76331 * 5 4 2 31 31 H 1.09001 * 109.51771 * 177.56654 * 5 4 2 32 32 H 1.08996 * 109.50617 * 182.39897 * 6 5 4 33 33 H 1.08996 * 109.53718 * 62.29721 * 6 5 4 34 34 H 1.08992 * 109.46763 * 299.16944 * 7 6 5 35 35 H 1.09001 * 109.45386 * 179.19106 * 7 6 5 36 36 H 1.09000 * 109.46983 * 49.65825 * 9 8 7 37 37 H 1.09007 * 109.46909 * 169.65356 * 9 8 7 38 38 H 1.08994 * 109.47056 * 300.00447 * 10 9 8 39 39 H 1.09007 * 109.46981 * 60.00281 * 10 9 8 40 40 H 1.09003 * 109.46917 * 300.00375 * 11 10 9 41 41 H 1.08997 * 109.46697 * 60.00362 * 11 10 9 42 42 H 0.97001 * 119.99627 * 0.02562 * 12 11 10 43 43 H 1.08994 * 109.47029 * 300.00327 * 15 13 12 44 44 H 1.08996 * 109.46907 * 59.99920 * 15 13 12 45 45 H 1.09000 * 109.47217 * 300.00641 * 16 15 13 46 46 H 1.09007 * 109.46756 * 60.00222 * 16 15 13 47 47 H 0.96997 * 120.00459 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 3.5710 -0.7359 -1.2356 6 6 4.0548 -1.4188 0.0466 7 6 3.4865 -0.6777 1.2591 8 7 2.0193 -0.6918 1.1993 9 6 1.4373 -0.1108 2.4166 10 6 1.6688 -1.0585 3.5952 11 6 1.0631 -0.4530 4.8631 12 7 1.2853 -1.3601 5.9917 13 6 0.8344 -1.0322 7.2188 14 8 0.2452 0.0141 7.3886 15 6 1.0625 -1.9657 8.3797 16 6 0.4570 -1.3601 9.6476 17 6 0.6845 -2.2938 10.8084 18 1 1.2089 -3.2258 10.6570 19 6 0.2232 -1.9584 12.0636 20 7 -0.4150 -0.8234 12.2481 21 14 0.5058 -3.1155 13.5026 22 1 1.9642 -3.3155 13.6980 23 1 -0.0820 -2.5278 14.7332 24 1 -0.1397 -4.4228 13.2207 25 1 -0.3633 0.6233 0.8171 26 1 -0.3633 0.3960 -0.9483 27 1 -0.3634 -1.0193 0.1312 28 1 1.6659 -1.7449 -1.2574 29 1 1.6895 -0.1984 -2.1399 30 1 3.9456 0.2872 -1.2672 31 1 3.9379 -1.2861 -2.1020 32 1 5.1438 -1.3947 0.0831 33 1 3.7130 -2.4537 0.0596 34 1 3.8403 0.3531 1.2533 35 1 3.8175 -1.1702 2.1734 36 1 1.9110 0.8489 2.6234 37 1 0.3667 0.0359 2.2731 38 1 1.1951 -2.0181 3.3882 39 1 2.7393 -1.2052 3.7386 40 1 1.5373 0.5065 5.0697 41 1 -0.0073 -0.3060 4.7199 42 1 1.7569 -2.1968 5.8558 43 1 0.5888 -2.9252 8.1728 44 1 2.1330 -2.1124 8.5230 45 1 0.9311 -0.4006 9.8542 46 1 -0.6136 -1.2131 9.5045 47 1 -0.7398 -0.5876 13.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359843356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -90.086641 kcal Electronic energy + Delta-G solvation = -21803.628450 eV Core-core repulsion = 18597.887885 eV Total energy + Delta-G solvation = -3205.740565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.72715 -40.26325 -36.82060 -35.54670 -34.81052 -33.54077 -33.03641 -31.51476 -28.24295 -27.79538 -26.33559 -24.49898 -23.30073 -22.37329 -22.06162 -20.96247 -20.55860 -18.78633 -17.43494 -17.30357 -16.98757 -16.54442 -16.43086 -16.17866 -15.80975 -15.31985 -15.07923 -14.85206 -14.74216 -14.19516 -14.17564 -13.97323 -13.45233 -13.23919 -13.02021 -12.90870 -12.77193 -12.73748 -12.69194 -12.49431 -12.44621 -11.94607 -11.89899 -11.81264 -11.63017 -11.55783 -11.31773 -11.15579 -11.03827 -10.71295 -10.55645 -10.05542 -9.27029 -8.17156 -6.31508 1.42575 1.47411 1.55079 1.72982 2.23948 2.45326 2.91526 3.15447 3.82570 3.85823 3.91663 4.01961 4.06954 4.12482 4.21679 4.29328 4.44052 4.46196 4.48515 4.53606 4.57930 4.58484 4.67237 4.69347 4.77141 4.88613 4.92093 4.98392 5.05998 5.08937 5.11050 5.18961 5.22591 5.26017 5.29440 5.34702 5.47477 5.51986 5.54277 5.64016 5.86203 6.15486 6.18361 6.21457 6.64151 6.86956 7.36720 7.39116 8.95343 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043871 B = 0.002191 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.087495 B =12777.634463 C =13165.142070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 H 0.032 0.968 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.115 4.115 7 C 0.049 3.951 8 N -0.536 5.536 9 C 0.053 3.947 10 C -0.107 4.107 11 C 0.120 3.880 12 N -0.718 5.718 13 C 0.509 3.491 14 O -0.592 6.592 15 C -0.119 4.119 16 C 0.041 3.959 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.938 5.938 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.288 1.288 24 H -0.262 1.262 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.417 0.583 43 H 0.105 0.895 44 H 0.105 0.895 45 H -0.019 1.019 46 H -0.019 1.019 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.032 -3.003 -30.582 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 H 0.050 0.950 4 C -0.146 4.146 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.078 4.078 8 N -0.261 5.261 9 C -0.075 4.075 10 C -0.145 4.145 11 C -0.004 4.004 12 N -0.371 5.371 13 C 0.297 3.703 14 O -0.473 6.473 15 C -0.159 4.159 16 C 0.003 3.997 17 C -0.582 4.582 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.000 1.000 46 H 0.000 1.000 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.389 -2.638 -30.406 31.652 hybrid contribution 0.217 0.643 1.059 1.258 sum 8.606 -1.996 -29.346 30.647 Atomic orbital electron populations 1.21930 0.93932 1.02471 1.02214 1.21670 0.95722 0.95078 0.90523 0.95003 1.21620 0.95677 1.01169 0.96167 1.21599 0.95620 1.00650 0.98102 1.21572 1.00204 0.99858 0.93605 1.22204 0.87024 0.98777 0.99832 1.61961 1.07411 1.55093 1.01648 1.22054 1.00889 0.95274 0.89283 1.21596 1.01837 0.99929 0.91150 1.21264 1.00373 0.93079 0.85673 1.45890 1.59341 1.24655 1.07263 1.21361 0.77042 0.86757 0.85101 1.90648 1.43454 1.27825 1.85323 1.21638 1.03803 0.98597 0.91871 1.18694 0.94169 0.94761 0.92028 1.21697 1.36776 1.05790 0.93918 0.90511 1.26173 0.94705 0.97090 1.02678 1.70176 1.39230 1.24724 1.23687 0.85346 0.79029 0.78611 0.77080 1.18660 1.21383 1.18640 0.92802 0.91029 0.91978 0.91451 0.90657 0.92511 0.90860 0.90704 0.91415 0.95576 0.90225 0.95096 0.89781 0.89765 0.90382 0.93183 0.92849 0.74583 0.87673 0.87696 1.00038 1.00025 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.56 71.98 0.62 -1.27 16 2 C 0.08 1.08 2.44 44.94 0.11 1.19 16 3 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 4 C -0.11 -1.23 5.37 30.65 0.16 -1.07 16 5 C -0.12 -1.29 6.00 30.67 0.18 -1.10 16 6 C -0.11 -1.31 6.09 30.65 0.19 -1.12 16 7 C 0.05 0.68 5.30 86.33 0.46 1.14 16 8 N -0.54 -8.13 4.46 -871.08 -3.88 -12.01 16 9 C 0.05 0.87 4.75 86.30 0.41 1.28 16 10 C -0.11 -1.76 5.35 30.59 0.16 -1.59 16 11 C 0.12 2.91 5.67 86.38 0.49 3.40 16 12 N -0.72 -19.43 5.56 -463.07 -2.57 -22.01 16 13 C 0.51 20.08 7.83 87.66 0.69 20.77 16 14 O -0.59 -29.89 15.98 -3.00 -0.05 -29.94 16 15 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 16 C 0.04 2.33 4.26 29.85 0.13 2.46 16 17 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 18 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 20 N -0.94 -60.24 13.29 21.44 0.28 -59.96 16 21 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H 0.05 0.73 6.46 -2.39 -0.02 0.71 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.08 1.06 6.42 -2.39 -0.02 1.05 16 36 H 0.03 0.54 8.07 -2.39 -0.02 0.52 16 37 H 0.08 1.38 5.61 -2.38 -0.01 1.37 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.16 6.59 -2.38 -0.02 1.14 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.42 8.09 8.47 -92.71 -0.79 7.31 16 43 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 44 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 45 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 46 H -0.02 -1.20 8.10 -2.38 -0.02 -1.22 16 47 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -76.23 367.99 0.40 -75.83 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.13 Total: 13.19 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.46 Total: -11.76 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -6.17 Total: -93.97 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -76.23 0.40 -75.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359843356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.254 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds