Wall clock time and date at job start Tue Mar 31 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99371 * 2 1 3 5 5 N 1.46496 * 109.47194 * 185.00163 * 4 2 1 6 6 C 1.34777 * 120.00271 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99854 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46979 * 120.00420 * 14 12 10 17 17 H 1.48498 * 109.46942 * 240.00334 * 14 12 10 18 18 N 1.46908 * 109.46919 * 119.99703 * 2 1 3 19 19 C 1.46842 * 110.99675 * 59.20589 * 18 2 1 20 20 C 1.53039 * 109.52135 * 174.16049 * 19 18 2 21 21 C 1.53119 * 109.27637 * 59.17969 * 20 19 18 22 22 C 1.53115 * 109.16417 * 302.34799 * 21 20 19 23 23 C 1.46846 * 110.99935 * 294.99899 * 18 2 1 24 24 H 1.09007 * 109.46411 * 65.83122 * 23 18 2 25 25 C 1.53008 * 109.46202 * 305.85719 * 23 18 2 26 26 H 1.08994 * 109.47556 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47332 * 300.00931 * 1 2 3 28 28 H 1.09000 * 109.46950 * 60.00129 * 1 2 3 29 29 H 1.09002 * 109.47045 * 65.00290 * 4 2 1 30 30 H 1.09001 * 109.47375 * 305.00215 * 4 2 1 31 31 H 0.97005 * 120.00266 * 0.02562 * 5 4 2 32 32 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 33 33 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 34 34 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 35 35 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 36 36 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.46545 * 294.17543 * 19 18 2 38 38 H 1.08999 * 109.46377 * 54.15197 * 19 18 2 39 39 H 1.09001 * 109.50762 * 299.24257 * 20 19 18 40 40 H 1.08997 * 109.50989 * 179.12066 * 20 19 18 41 41 H 1.09002 * 109.52433 * 182.43672 * 21 20 19 42 42 H 1.08998 * 109.52450 * 62.25589 * 21 20 19 43 43 H 1.09001 * 109.50029 * 297.71034 * 22 21 20 44 44 H 1.08995 * 109.50914 * 177.59742 * 22 21 20 45 45 H 1.08993 * 109.46897 * 59.99743 * 25 23 18 46 46 H 1.09000 * 109.47098 * 180.02562 * 25 23 18 47 47 H 1.08996 * 109.46587 * 299.99822 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4295 -2.1905 7 8 3.5699 -1.8845 -3.1392 8 6 5.6748 -1.5381 -2.1298 9 6 6.1848 -2.2594 -3.3791 10 6 7.6867 -2.3676 -3.3187 11 1 8.2237 -1.9627 -2.4736 12 6 8.3752 -2.9842 -4.3418 13 7 7.7212 -3.4777 -5.3706 14 14 10.2370 -3.1176 -4.2673 15 1 10.7286 -2.4881 -3.0154 16 1 10.6319 -4.5490 -4.2894 17 1 10.8302 -2.4223 -5.4377 18 7 2.0196 -0.6925 1.1995 19 6 1.5333 -2.0773 1.2430 20 6 2.1775 -2.8088 2.4229 21 6 1.8220 -2.0822 3.7230 22 6 2.2963 -0.6292 3.6326 23 6 1.6488 0.0390 2.4177 24 1 0.5648 0.0280 2.5321 25 6 2.1356 1.4857 2.3117 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.7516 -0.1585 -2.1369 30 1 1.6053 -1.7199 -1.2950 31 1 3.9824 -0.4629 -0.4315 32 1 5.9628 -2.1009 -1.2419 33 1 6.1098 -0.5397 -2.0841 34 1 5.7499 -3.2578 -3.4252 35 1 5.8968 -1.6964 -4.2667 36 1 8.2055 -3.9119 -6.0902 37 1 0.4499 -2.0782 1.3629 38 1 1.7963 -2.5839 0.3144 39 1 3.2601 -2.8203 2.2968 40 1 1.8045 -3.8321 2.4643 41 1 2.3142 -2.5746 4.5617 42 1 0.7421 -2.1045 3.8692 43 1 3.3808 -0.6064 3.5255 44 1 2.0083 -0.0953 4.5381 45 1 1.6737 1.9620 1.4469 46 1 1.8608 2.0287 3.2160 47 1 3.2194 1.4968 2.1969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360015589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:54 Heat of formation + Delta-G solvation = -59.046514 kcal Electronic energy + Delta-G solvation = -23092.296821 eV Core-core repulsion = 19887.902257 eV Total energy + Delta-G solvation = -3204.394564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22819 -38.75358 -35.71247 -33.46625 -33.33331 -32.62145 -30.92187 -30.04136 -27.28239 -26.85010 -25.07428 -24.39615 -22.01145 -21.41458 -20.83394 -19.42605 -19.11179 -16.77253 -16.69840 -15.98771 -15.49369 -15.29927 -14.82422 -14.68122 -14.52149 -14.38340 -14.16762 -13.65599 -13.12816 -13.01877 -12.72963 -12.66424 -12.33498 -12.25114 -12.12977 -12.03011 -11.90668 -11.63001 -11.40721 -11.06894 -10.92505 -10.90058 -10.89741 -10.53099 -10.42131 -10.33333 -9.87348 -9.57950 -9.08043 -8.90512 -8.58608 -8.44072 -8.26404 -5.90798 -3.94652 3.36074 3.40666 3.42925 3.46484 3.52446 3.83715 4.48635 4.51641 4.52527 4.62291 4.71021 4.91614 4.95318 5.05795 5.08675 5.11924 5.25298 5.34116 5.39267 5.44133 5.46965 5.51708 5.57859 5.61493 5.65910 5.74015 5.75838 5.79605 5.88895 5.91998 5.97544 6.05261 6.08142 6.21084 6.34772 6.37300 6.83539 6.95462 6.99580 7.01963 7.81358 7.94629 8.12808 8.14556 8.46003 8.95451 9.15045 9.68576 11.20259 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022590 B = 0.003335 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.193907 B = 8393.727558 C = 8859.482648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.064 3.936 3 H 0.095 0.905 4 C 0.128 3.872 5 N -0.731 5.731 6 C 0.508 3.492 7 O -0.543 6.543 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.523 5.523 19 C 0.050 3.950 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.040 0.960 25 C -0.151 4.151 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.403 0.597 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.259 0.741 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.700 8.442 19.881 26.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.045 4.045 3 H 0.113 0.887 4 C 0.003 3.997 5 N -0.385 5.385 6 C 0.296 3.704 7 O -0.419 6.419 8 C -0.169 4.169 9 C -0.001 4.001 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.211 1.211 18 N -0.248 5.248 19 C -0.077 4.077 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.027 4.027 24 H 0.058 0.942 25 C -0.208 4.208 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.238 0.762 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.597 7.999 18.992 25.845 hybrid contribution 0.236 0.065 0.384 0.456 sum -15.361 8.063 19.377 26.009 Atomic orbital electron populations 1.22378 0.96823 1.02628 1.02511 1.22065 0.93231 0.99160 0.90001 0.88734 1.21266 0.82232 1.00179 0.95974 1.46015 1.06401 1.61582 1.24504 1.21521 0.91432 0.76215 0.81248 1.90655 1.70721 1.47137 1.33378 1.21825 0.88485 1.02672 1.03873 1.18892 0.94800 0.95826 0.90557 1.21287 0.92087 1.37382 1.05518 0.92575 1.25027 0.98310 0.95607 0.95497 1.70012 1.35293 1.38459 1.09169 0.86549 0.85901 0.77680 0.77913 1.19747 1.21063 1.21061 1.62114 1.59528 1.01949 1.01200 1.22156 0.96861 0.88956 0.99736 1.21582 1.02004 0.98211 0.93722 1.21578 1.00528 0.95873 0.97868 1.21626 1.01528 0.95311 0.96436 1.21605 0.97349 0.93599 0.90174 0.94167 1.21952 1.02529 0.94774 1.01573 0.92042 0.92189 0.91644 0.91675 0.92086 0.76175 0.90377 0.90461 0.95905 0.95907 0.93080 0.94835 0.90048 0.90799 0.91711 0.91913 0.92632 0.90866 0.91875 0.92381 0.92376 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.50 37.16 0.32 -1.16 16 2 C 0.06 0.59 2.12 -67.71 -0.14 0.45 16 3 H 0.09 0.84 5.92 -51.93 -0.31 0.53 16 4 C 0.13 1.63 4.69 -4.05 -0.02 1.61 16 5 N -0.73 -10.73 5.39 -60.30 -0.32 -11.05 16 6 C 0.51 10.12 7.83 -10.98 -0.09 10.04 16 7 O -0.54 -13.22 15.98 5.56 0.09 -13.13 16 8 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.89 13.29 55.43 0.74 -27.16 16 14 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 N -0.52 -4.80 3.92 -218.76 -0.86 -5.65 16 19 C 0.05 0.49 4.63 -3.84 -0.02 0.47 16 20 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 21 C -0.12 -0.93 6.00 -26.61 -0.16 -1.09 16 22 C -0.11 -0.84 5.37 -26.66 -0.14 -0.98 16 23 C 0.08 0.63 2.00 -67.72 -0.14 0.50 16 24 H 0.04 0.32 6.73 -51.92 -0.35 -0.02 16 25 C -0.15 -1.06 8.78 37.16 0.33 -0.73 16 26 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16 27 H 0.06 0.44 6.65 -51.93 -0.35 0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.85 6.57 -51.93 -0.34 0.51 16 31 H 0.40 5.12 8.14 -40.82 -0.33 4.79 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.03 0.31 6.62 -51.93 -0.34 -0.03 16 38 H 0.08 0.95 6.14 -51.93 -0.32 0.63 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.40 6.22 -51.93 -0.32 0.08 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -33.41 359.38 -9.33 -42.74 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.45 Total: -0.11 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.91 Total: -8.00 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.45 Total: -43.86 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.41 -9.33 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360015589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.307 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds