Wall clock time and date at job start Tue Mar 31 2020 06:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47500 * 2 1 4 4 C 1.53009 * 109.46884 * 120.00072 * 2 1 3 5 5 N 1.46495 * 109.47003 * 174.99628 * 4 2 1 6 6 C 1.34772 * 120.00102 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00045 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00488 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47707 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47146 * 180.02562 * 9 8 6 11 11 H 1.07993 * 120.00751 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99679 * 179.72727 * 10 9 8 13 13 N 1.31518 * 119.99793 * 0.27121 * 12 10 9 14 14 Si 1.86803 * 120.00123 * 180.27564 * 12 10 9 15 15 H 1.48502 * 109.47319 * 89.99589 * 14 12 10 16 16 H 1.48502 * 109.47001 * 209.99698 * 14 12 10 17 17 H 1.48496 * 109.46766 * 329.99689 * 14 12 10 18 18 N 1.46898 * 109.47405 * 239.99781 * 2 1 3 19 19 C 1.46853 * 111.00041 * 303.90714 * 18 2 1 20 20 C 1.53034 * 109.52362 * 185.83471 * 19 18 2 21 21 C 1.53118 * 109.28194 * 300.81985 * 20 19 18 22 22 C 1.53122 * 109.15935 * 57.65420 * 21 20 19 23 23 C 1.46845 * 110.99734 * 68.11257 * 18 2 1 24 24 H 1.09001 * 109.46941 * 294.17776 * 23 18 2 25 25 C 1.52995 * 109.46340 * 54.15000 * 23 18 2 26 26 H 1.08997 * 109.47153 * 300.00345 * 1 2 3 27 27 H 1.09000 * 109.46676 * 59.99891 * 1 2 3 28 28 H 1.09001 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46909 * 55.00027 * 4 2 1 30 30 H 1.08992 * 109.46739 * 294.99848 * 4 2 1 31 31 H 0.97001 * 119.99973 * 0.02562 * 5 4 2 32 32 H 1.09009 * 109.46994 * 60.00320 * 8 6 5 33 33 H 1.08997 * 109.47615 * 300.00602 * 8 6 5 34 34 H 1.08995 * 109.46858 * 60.00024 * 9 8 6 35 35 H 1.09005 * 109.46562 * 300.00481 * 9 8 6 36 36 H 0.97001 * 119.99710 * 180.02562 * 13 12 10 37 37 H 1.08994 * 109.45996 * 305.85133 * 19 18 2 38 38 H 1.09005 * 109.46181 * 65.83113 * 19 18 2 39 39 H 1.09003 * 109.50382 * 60.75977 * 20 19 18 40 40 H 1.09002 * 109.50626 * 180.83770 * 20 19 18 41 41 H 1.08998 * 109.52729 * 177.56062 * 21 20 19 42 42 H 1.08998 * 109.52399 * 297.74990 * 21 20 19 43 43 H 1.08994 * 109.50625 * 62.28592 * 22 21 20 44 44 H 1.09002 * 109.50429 * 182.40910 * 22 21 20 45 45 H 1.09000 * 109.47165 * 53.63311 * 25 23 18 46 46 H 1.08998 * 109.47232 * 173.63459 * 25 23 18 47 47 H 1.09002 * 109.46969 * 293.63018 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4999 -0.8265 1.1906 6 6 4.1730 -1.4284 2.1912 7 8 3.5699 -1.8834 3.1400 8 6 5.6748 -1.5372 2.1306 9 6 6.1848 -2.2584 3.3799 10 6 7.6866 -2.3666 3.3196 11 1 8.2237 -1.9619 2.4746 12 6 8.3756 -2.9777 4.3457 13 7 7.7215 -3.4710 5.3746 14 14 10.2379 -3.1051 4.2746 15 1 10.8407 -1.9085 4.9151 16 1 10.6784 -4.3268 4.9948 17 1 10.6750 -3.1811 2.8575 18 7 2.0197 -0.6925 -1.1994 19 6 1.4741 -2.0535 -1.2809 20 6 2.1159 -2.7921 -2.4576 21 6 1.8268 -2.0279 -3.7525 22 6 2.3622 -0.5992 -3.6232 23 6 1.7133 0.0759 -2.4126 24 1 0.6333 0.1154 -2.5546 25 6 2.2605 1.4973 -2.2676 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7199 1.2952 30 1 1.7516 -0.1584 2.1369 31 1 3.9823 -0.4623 0.4320 32 1 6.1098 -0.5388 2.0840 33 1 5.9628 -2.1008 1.2432 34 1 5.7498 -3.2567 3.4261 35 1 5.8967 -1.6951 4.2676 36 1 8.2062 -3.9006 6.0967 37 1 1.6902 -2.5874 -0.3556 38 1 0.3952 -2.0040 -1.4283 39 1 3.1933 -2.8540 -2.3044 40 1 1.6998 -3.7972 -2.5269 41 1 2.3185 -2.5270 -4.5876 42 1 0.7511 -1.9994 -3.9263 43 1 3.4435 -0.6266 -3.4882 44 1 2.1216 -0.0373 -4.5256 45 1 3.3195 1.4547 -2.0132 46 1 2.1341 2.0330 -3.2084 47 1 1.7176 2.0167 -1.4779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360015592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:02 Heat of formation + Delta-G solvation = -59.824213 kcal Electronic energy + Delta-G solvation = -23085.274275 eV Core-core repulsion = 19880.845987 eV Total energy + Delta-G solvation = -3204.428288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.21124 -38.75009 -35.70965 -33.44599 -33.32176 -32.65879 -30.92104 -30.03337 -27.27749 -26.84966 -25.08202 -24.38302 -22.01195 -21.41707 -20.82023 -19.42199 -19.12332 -16.76836 -16.68307 -15.98203 -15.48473 -15.30259 -14.81715 -14.67939 -14.51194 -14.38703 -14.16711 -13.65893 -13.12461 -13.03343 -12.74083 -12.66119 -12.31483 -12.24334 -12.12747 -12.03113 -11.91126 -11.63833 -11.40391 -11.07187 -10.93035 -10.89826 -10.87800 -10.54738 -10.42852 -10.34467 -9.86595 -9.57506 -9.08673 -8.90530 -8.58137 -8.44087 -8.25793 -5.90479 -3.94374 3.37032 3.41176 3.42844 3.45693 3.52816 3.83915 4.48784 4.51595 4.52671 4.62797 4.70547 4.91557 4.95171 5.06525 5.08362 5.11616 5.25031 5.32985 5.39687 5.44337 5.47209 5.52358 5.57518 5.61475 5.65690 5.73792 5.75698 5.79526 5.89228 5.91620 5.97528 6.04942 6.08055 6.20880 6.35039 6.37591 6.83750 6.95447 6.99986 7.02392 7.81296 7.94967 8.13397 8.15012 8.46285 8.96018 9.15182 9.68738 11.20544 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.003337 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.489331 B = 8388.777795 C = 8850.624105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.064 3.936 3 H 0.094 0.906 4 C 0.129 3.871 5 N -0.730 5.730 6 C 0.507 3.493 7 O -0.543 6.543 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 N -0.523 5.523 19 C 0.051 3.949 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.040 0.960 25 C -0.150 4.150 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.403 0.597 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.260 0.740 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.654 8.499 -19.916 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.045 4.045 3 H 0.112 0.888 4 C 0.004 3.996 5 N -0.384 5.384 6 C 0.296 3.704 7 O -0.419 6.419 8 C -0.169 4.169 9 C 0.000 4.000 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 N -0.248 5.248 19 C -0.076 4.076 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.027 4.027 24 H 0.058 0.942 25 C -0.208 4.208 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.238 0.762 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.555 8.025 -19.014 25.843 hybrid contribution 0.243 0.130 -0.408 0.492 sum -15.311 8.155 -19.421 26.041 Atomic orbital electron populations 1.22375 0.96804 1.02650 1.02466 1.22059 0.93241 0.99107 0.90065 0.88780 1.21250 0.82215 1.00165 0.95922 1.46001 1.06404 1.61583 1.24455 1.21515 0.91427 0.76225 0.81253 1.90656 1.70727 1.47134 1.33395 1.21825 0.88503 1.02650 1.03886 1.18886 0.94770 0.95820 0.90551 1.21247 0.92076 1.37629 1.05401 0.92632 1.25028 0.98302 0.95584 0.95505 1.70006 1.35361 1.38542 1.09028 0.86602 0.85895 0.77471 0.78042 1.20715 1.21268 1.19888 1.62119 1.59128 1.02147 1.01389 1.22149 0.96455 0.89402 0.99640 1.21584 1.02124 0.98050 0.93782 1.21577 1.00481 0.95932 0.97846 1.21632 1.01401 0.95448 0.96434 1.21601 0.97524 0.93358 0.90226 0.94221 1.21941 1.02331 0.94942 1.01569 0.91645 0.92275 0.91975 0.92129 0.91702 0.76212 0.90477 0.90379 0.95906 0.95921 0.93025 0.90149 0.94779 0.90801 0.91720 0.91910 0.92632 0.90844 0.91867 0.91367 0.92292 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 8.48 37.16 0.31 -1.16 16 2 C 0.06 0.59 2.16 -67.71 -0.15 0.45 16 3 H 0.09 0.84 5.89 -51.93 -0.31 0.53 16 4 C 0.13 1.65 4.79 -4.04 -0.02 1.63 16 5 N -0.73 -10.75 5.39 -60.30 -0.32 -11.08 16 6 C 0.51 10.15 7.83 -10.99 -0.09 10.06 16 7 O -0.54 -13.25 15.98 5.55 0.09 -13.16 16 8 C -0.13 -2.72 5.64 -27.88 -0.16 -2.87 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.53 -15.22 9.11 -34.44 -0.31 -15.54 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.92 13.29 55.43 0.74 -27.18 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 N -0.52 -4.79 3.90 -218.76 -0.85 -5.64 16 19 C 0.05 0.49 4.58 -3.83 -0.02 0.47 16 20 C -0.12 -1.05 6.09 -26.65 -0.16 -1.21 16 21 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 22 C -0.11 -0.84 5.37 -26.64 -0.14 -0.98 16 23 C 0.08 0.64 2.08 -67.72 -0.14 0.49 16 24 H 0.04 0.32 6.81 -51.93 -0.35 -0.03 16 25 C -0.15 -1.06 8.55 37.16 0.32 -0.74 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.44 6.75 -51.93 -0.35 0.08 16 28 H 0.06 0.52 6.48 -51.93 -0.34 0.19 16 29 H 0.06 0.84 6.62 -51.93 -0.34 0.50 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.40 5.13 8.14 -40.82 -0.33 4.79 16 32 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 37 H 0.08 0.92 6.24 -51.93 -0.32 0.59 16 38 H 0.03 0.31 6.59 -51.93 -0.34 -0.03 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -33.44 359.83 -9.36 -42.81 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.48 Total: -0.16 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.93 Total: -7.98 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.44 Total: -43.90 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.44 -9.36 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360015592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.016 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds