Wall clock time and date at job start Tue Mar 31 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47494 * 2 1 4 4 C 1.53002 * 109.47148 * 239.99533 * 2 1 3 5 5 C 1.53004 * 109.47345 * 300.00515 * 4 2 1 6 6 C 1.53005 * 109.46769 * 299.99978 * 5 4 2 7 7 C 1.52992 * 109.47141 * 59.99919 * 6 5 4 8 8 H 1.08997 * 109.47672 * 59.99903 * 7 6 5 9 9 C 1.53005 * 109.47141 * 179.97438 * 7 6 5 10 10 N 1.46503 * 109.46592 * 295.00286 * 9 7 6 11 11 C 1.34783 * 119.99449 * 179.97438 * 10 9 7 12 12 O 1.21590 * 119.99935 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00093 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 C 1.53001 * 109.47050 * 119.99923 * 2 1 3 25 25 H 1.08998 * 109.47008 * 300.00345 * 24 2 1 26 26 C 1.52999 * 109.47350 * 179.97438 * 24 2 1 27 27 H 1.08997 * 109.46888 * 300.00485 * 1 2 3 28 28 H 1.08999 * 109.46722 * 60.00070 * 1 2 3 29 29 H 1.08994 * 109.47494 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46985 * 60.00557 * 4 2 1 31 31 H 1.08995 * 109.47097 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.46878 * 59.99361 * 5 4 2 33 33 H 1.08998 * 109.46816 * 180.02562 * 5 4 2 34 34 H 1.09007 * 109.46646 * 299.99768 * 6 5 4 35 35 H 1.08997 * 109.46452 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47248 * 175.00293 * 9 7 6 37 37 H 1.08996 * 109.46721 * 54.99856 * 9 7 6 38 38 H 0.96992 * 120.00655 * 359.97438 * 10 9 7 39 39 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 41 41 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 42 42 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 43 43 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 44 44 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.47018 * 300.00348 * 26 24 2 46 46 H 1.09003 * 109.47071 * 59.99877 * 26 24 2 47 47 H 1.08999 * 109.47022 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5299 -2.1639 -1.2492 6 6 2.0399 -2.8851 0.0002 7 6 1.5299 -2.1638 1.2493 8 1 0.4399 -2.1636 1.2493 9 6 2.0393 -2.8853 2.4986 10 7 1.4546 -4.2272 2.5599 11 6 1.7630 -5.0505 3.5815 12 8 2.5268 -4.6797 4.4519 13 7 1.2247 -6.2849 3.6383 14 6 1.5594 -7.1796 4.7490 15 6 0.8209 -8.5081 4.5740 16 6 1.1648 -9.4282 5.7169 17 1 1.8425 -9.0986 6.4904 18 6 0.6140 -10.6909 5.7750 19 7 -0.2118 -11.0921 4.8334 20 14 1.0407 -11.8317 7.1913 21 1 0.6329 -11.2030 8.4734 22 1 0.3229 -13.1207 7.0222 23 1 2.5050 -12.0781 7.2045 24 6 2.0400 -0.7212 1.2493 25 1 1.6766 -0.2074 2.1392 26 6 3.5700 -0.7218 1.2490 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6768 -0.2075 -2.1392 31 1 3.1300 -0.7210 -1.2494 32 1 0.4400 -2.1638 -1.2491 33 1 1.8937 -2.6778 -2.1389 34 1 3.1300 -2.8851 0.0001 35 1 1.6769 -3.9128 -0.0001 36 1 1.7510 -2.3224 3.3863 37 1 3.1256 -2.9640 2.4551 38 1 0.8456 -4.5231 1.8654 39 1 0.6151 -6.5805 2.9441 40 1 1.2601 -6.7182 5.6901 41 1 2.6343 -7.3603 4.7586 42 1 -0.2540 -8.3276 4.5641 43 1 1.1206 -8.9692 3.6330 44 1 -0.5996 -11.9803 4.8744 45 1 3.9329 -1.2359 0.3590 46 1 3.9337 0.3057 1.2488 47 1 3.9332 -1.2361 2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361550808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:46 Heat of formation + Delta-G solvation = -74.031685 kcal Electronic energy + Delta-G solvation = -22465.827402 eV Core-core repulsion = 19260.783032 eV Total energy + Delta-G solvation = -3205.044370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44374 -39.23184 -35.32511 -34.49134 -32.85238 -32.38309 -31.98889 -29.66658 -28.80359 -26.17238 -24.83005 -24.12321 -22.59083 -21.31635 -20.87668 -20.47946 -18.34986 -17.75974 -16.38112 -16.15280 -15.93857 -15.39369 -15.02254 -14.68892 -14.49471 -14.15610 -13.90221 -13.64400 -13.48662 -13.29409 -13.08738 -12.83921 -12.42451 -12.24518 -12.06025 -11.89185 -11.74827 -11.52134 -11.23741 -11.16453 -11.06331 -10.97156 -10.62824 -10.32288 -10.27005 -10.21899 -10.13493 -9.87907 -9.51594 -9.24436 -8.91748 -8.44960 -8.18532 -6.06847 -4.09392 3.13485 3.33213 3.36708 3.40782 3.67094 4.31396 4.34625 4.36091 4.42910 4.74591 4.81643 4.91265 4.93116 5.00172 5.07754 5.12776 5.24488 5.30142 5.32852 5.39917 5.49879 5.54043 5.64801 5.64971 5.67966 5.74008 5.80556 5.86399 5.94992 5.97973 6.04239 6.11577 6.12452 6.33052 6.35150 6.44029 6.70527 6.82046 7.06024 7.30825 7.60335 7.66671 7.92552 8.29283 8.50278 8.95708 9.07096 9.55146 11.04843 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039208 B = 0.002538 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.962477 B =11030.321098 C =11349.062136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.095 4.095 8 H 0.079 0.921 9 C 0.144 3.856 10 N -0.753 5.753 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.740 5.740 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.077 4.077 25 H 0.072 0.928 26 C -0.156 4.156 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.392 0.608 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 22.425 -14.541 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.114 4.114 8 H 0.097 0.903 9 C 0.019 3.981 10 N -0.410 5.410 11 C 0.397 3.603 12 O -0.479 6.479 13 N -0.393 5.393 14 C 0.018 3.982 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.096 4.096 25 H 0.090 0.910 26 C -0.213 4.213 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.392 22.593 -13.751 26.557 hybrid contribution -0.452 -0.988 0.064 1.088 sum 1.940 21.605 -13.688 25.650 Atomic orbital electron populations 1.21953 0.95366 1.02220 1.01416 1.21104 0.95701 0.98910 0.94640 0.91331 1.21607 1.00827 0.95716 0.97243 1.21566 1.00986 0.95529 0.97737 1.21636 1.01367 0.98769 0.93656 1.21448 1.00903 0.94788 0.94239 0.90291 1.21221 0.98094 0.81659 0.97109 1.45158 1.52540 1.15813 1.27451 1.16087 0.81146 0.80990 0.82087 1.90882 1.40352 1.76172 1.40475 1.45529 1.50402 1.13790 1.29608 1.21572 0.99755 0.90254 0.86669 1.19317 0.95676 0.89449 0.97974 1.21028 1.27850 0.98677 1.08400 0.92273 1.24995 0.94944 0.98080 0.96283 1.69945 1.30718 1.19386 1.33376 0.86569 0.78630 0.79764 0.82552 1.20107 1.21271 1.20102 1.21052 0.95966 0.94582 0.97989 0.90975 1.22028 0.95133 1.01672 1.02512 0.92814 0.92961 0.91926 0.92341 0.91686 0.91720 0.92169 0.91393 0.91885 0.92057 0.91664 0.77406 0.77479 0.92855 0.92856 0.96005 0.96001 0.92824 0.91953 0.92876 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.50 37.16 0.32 -0.65 16 2 C -0.09 -0.55 2.72 -90.62 -0.25 -0.80 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.74 5.18 -26.73 -0.14 -0.88 16 5 C -0.12 -0.81 5.65 -26.73 -0.15 -0.96 16 6 C -0.12 -0.91 4.80 -26.73 -0.13 -1.03 16 7 C -0.10 -0.77 1.72 -90.62 -0.16 -0.93 16 8 H 0.08 0.63 6.43 -51.93 -0.33 0.30 16 9 C 0.14 1.64 4.56 -4.04 -0.02 1.62 16 10 N -0.75 -9.78 5.29 -65.22 -0.34 -10.12 16 11 C 0.70 12.61 8.57 -86.91 -0.74 11.86 16 12 O -0.60 -13.35 16.34 5.29 0.09 -13.26 16 13 N -0.74 -13.47 5.56 -65.22 -0.36 -13.83 16 14 C 0.14 3.10 5.61 -4.04 -0.02 3.07 16 15 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 16 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.08 -0.57 2.25 -90.62 -0.20 -0.77 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 C -0.16 -1.17 8.15 37.16 0.30 -0.87 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 32 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.57 6.43 -51.92 -0.33 0.23 16 35 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.81 6.71 -51.93 -0.35 0.47 16 38 H 0.39 4.04 7.67 -40.82 -0.31 3.73 16 39 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -32.09 354.38 -9.48 -41.57 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.17 Total: 2.91 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.74 Total: -3.53 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.03 Total: -49.59 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.09 -9.48 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361550808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.463 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds