Wall clock time and date at job start Tue Mar 31 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46642 * 2 1 4 4 C 1.52993 * 109.46793 * 240.00351 * 2 1 3 5 5 C 1.52999 * 109.46824 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47364 * 59.99854 * 5 4 2 7 7 C 1.53000 * 109.46672 * 299.99921 * 6 5 4 8 8 H 1.09005 * 109.47284 * 299.99860 * 7 6 5 9 9 C 1.53002 * 109.47013 * 180.02562 * 7 6 5 10 10 N 1.46506 * 109.47035 * 64.99796 * 9 7 6 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99797 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99769 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46703 * 179.97438 * 14 13 11 16 16 C 1.50700 * 109.46890 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00051 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99856 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46986 * 89.99776 * 20 18 16 22 22 H 1.48491 * 109.47090 * 209.99436 * 20 18 16 23 23 H 1.48499 * 109.47352 * 329.99623 * 20 18 16 24 24 C 1.52999 * 109.46984 * 119.99861 * 2 1 3 25 25 H 1.08996 * 109.46888 * 60.00708 * 24 2 1 26 26 C 1.53000 * 109.47160 * 299.99949 * 24 2 1 27 27 H 1.08993 * 109.46833 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47112 * 299.99747 * 1 2 3 29 29 H 1.08998 * 109.46901 * 59.99765 * 1 2 3 30 30 H 1.08998 * 109.47970 * 60.00014 * 4 2 1 31 31 H 1.09001 * 109.47239 * 299.99283 * 4 2 1 32 32 H 1.08997 * 109.47289 * 299.99388 * 5 4 2 33 33 H 1.08999 * 109.47143 * 179.97438 * 5 4 2 34 34 H 1.09007 * 109.47055 * 180.02562 * 6 5 4 35 35 H 1.08988 * 109.47136 * 60.00120 * 6 5 4 36 36 H 1.09004 * 109.46930 * 305.00026 * 9 7 6 37 37 H 1.09000 * 109.47312 * 184.99970 * 9 7 6 38 38 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 39 39 H 0.96999 * 120.00050 * 359.97438 * 13 11 10 40 40 H 1.08999 * 109.46398 * 299.99705 * 14 13 11 41 41 H 1.08992 * 109.47350 * 59.99653 * 14 13 11 42 42 H 1.08999 * 109.47498 * 299.99087 * 15 14 13 43 43 H 1.09000 * 109.47301 * 60.00055 * 15 14 13 44 44 H 0.97000 * 119.99712 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.46946 * 300.00007 * 26 24 2 46 46 H 1.08997 * 109.47159 * 60.00519 * 26 24 2 47 47 H 1.09001 * 109.46690 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2495 8 1 3.9332 0.3055 1.2497 9 6 4.0795 -1.4433 2.4988 10 7 5.5397 -1.3400 2.5604 11 6 6.2126 -1.9047 3.5825 12 8 5.6079 -2.5003 4.4532 13 7 7.5558 -1.8092 3.6395 14 6 8.2873 -2.4235 4.7503 15 6 9.7861 -2.1706 4.5756 16 6 10.5386 -2.8020 5.7184 17 1 10.0015 -3.3304 6.4922 18 6 11.9127 -2.7042 5.7768 19 7 12.5667 -2.0603 4.8349 20 14 12.8453 -3.4862 7.1939 21 1 13.2081 -4.8815 6.8377 22 1 14.0804 -2.7072 7.4634 23 1 11.9889 -3.4918 8.4071 24 6 2.0401 -0.7212 1.2493 25 1 1.6768 -1.7489 1.2492 26 6 1.5300 0.0001 2.4985 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6767 -0.2074 -2.1393 31 1 1.6767 -1.7489 -1.2493 32 1 3.9337 0.3058 -1.2488 33 1 3.9333 -1.2359 -2.1387 34 1 5.1696 -1.4434 0.0007 35 1 3.7159 -2.4708 0.0000 36 1 3.7912 -2.4936 2.4551 37 1 3.6450 -0.9838 3.3865 38 1 6.0220 -0.8645 1.8660 39 1 8.0381 -1.3343 2.9447 40 1 7.9521 -1.9874 5.6913 41 1 8.0990 -3.4970 4.7598 42 1 10.1210 -2.6070 3.6346 43 1 9.9747 -1.0971 4.5658 44 1 13.5334 -1.9919 4.8758 45 1 1.8934 1.0277 2.4984 46 1 0.4401 0.0000 2.4985 47 1 1.8938 -0.5135 3.3884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361550809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:49 Heat of formation + Delta-G solvation = -80.124160 kcal Electronic energy + Delta-G solvation = -22245.373591 eV Core-core repulsion = 19040.065032 eV Total energy + Delta-G solvation = -3205.308559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.12388 -39.11923 -35.36108 -34.52209 -33.31929 -32.85928 -32.11127 -29.51851 -27.83679 -26.30906 -25.29569 -24.22931 -21.36707 -21.18573 -20.69914 -20.52543 -19.95898 -17.90632 -16.38498 -15.97342 -15.46786 -15.09216 -14.93280 -14.78979 -14.58505 -14.45012 -14.06128 -13.57952 -13.45705 -13.42209 -13.01795 -12.61658 -12.27132 -12.16509 -12.09763 -11.97105 -11.83413 -11.62993 -11.15847 -11.13573 -11.08738 -10.99990 -10.67810 -10.61071 -10.28628 -10.24914 -10.14275 -9.87873 -9.51919 -9.23206 -8.91411 -8.45344 -8.18587 -6.07098 -4.09465 3.13067 3.31283 3.37320 3.42213 3.66972 4.27170 4.35077 4.38111 4.43311 4.69231 4.72466 4.84664 4.96807 5.06065 5.11677 5.16393 5.24044 5.26480 5.30003 5.40334 5.45517 5.52324 5.58983 5.69154 5.70815 5.72387 5.80247 5.84401 5.91645 5.96732 5.99837 6.06802 6.16808 6.27769 6.34956 6.43991 6.70329 6.82009 7.05902 7.30716 7.60410 7.66560 7.92483 8.29208 8.50182 8.95836 9.06983 9.55084 11.04609 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041690 B = 0.002465 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.466250 B =11356.493662 C =11805.683545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.093 4.093 8 H 0.076 0.924 9 C 0.142 3.858 10 N -0.753 5.753 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.740 5.740 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.076 4.076 25 H 0.073 0.927 26 C -0.156 4.156 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.392 0.608 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 6.085 -14.110 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.153 4.153 7 C -0.112 4.112 8 H 0.094 0.906 9 C 0.018 3.982 10 N -0.410 5.410 11 C 0.397 3.603 12 O -0.479 6.479 13 N -0.393 5.393 14 C 0.018 3.982 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.096 4.096 25 H 0.091 0.909 26 C -0.213 4.213 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.226 0.774 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.759 5.564 -13.313 26.948 hybrid contribution 1.126 0.066 0.020 1.128 sum -21.633 5.630 -13.293 26.008 Atomic orbital electron populations 1.21893 0.95330 1.01821 1.01641 1.21147 0.95367 0.99541 0.94339 0.91241 1.21605 0.95586 1.00693 0.97354 1.21535 0.95589 1.00762 0.97829 1.21609 1.00527 0.99511 0.93667 1.21427 0.95567 1.00054 0.94185 0.90554 1.21248 0.79092 1.00465 0.97401 1.45154 1.07376 1.60991 1.27437 1.16083 0.82270 0.79861 0.82091 1.90883 1.68162 1.48372 1.40469 1.45531 1.04505 1.59726 1.29572 1.21571 0.93540 0.96466 0.86669 1.19322 0.87455 0.97694 0.97994 1.21064 0.91643 1.34779 1.08373 0.92219 1.25003 0.97757 0.95292 0.96311 1.69959 1.07985 1.42047 1.33403 0.86507 0.79255 0.79221 0.82543 1.20572 1.21202 1.19719 1.21075 0.93708 1.00078 0.94689 0.90899 1.22004 1.01074 1.00605 0.97625 0.92741 0.92304 0.92929 0.92201 0.91998 0.92014 0.92019 0.91743 0.91699 0.92026 0.91500 0.77394 0.77474 0.92843 0.92856 0.95998 0.95991 0.92891 0.92661 0.92360 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.84 37.16 0.33 -0.56 16 2 C -0.09 -0.56 2.25 -90.62 -0.20 -0.76 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.11 -0.74 5.20 -26.73 -0.14 -0.88 16 5 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 6 C -0.12 -0.91 5.08 -26.73 -0.14 -1.04 16 7 C -0.09 -0.77 1.75 -90.65 -0.16 -0.93 16 8 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 9 C 0.14 1.63 4.85 -4.04 -0.02 1.61 16 10 N -0.75 -9.80 5.29 -65.22 -0.34 -10.14 16 11 C 0.70 12.62 8.57 -86.92 -0.74 11.87 16 12 O -0.60 -13.35 16.34 5.28 0.09 -13.26 16 13 N -0.74 -13.48 5.56 -65.23 -0.36 -13.84 16 14 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 15 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 16 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.08 -0.57 1.77 -90.65 -0.16 -0.73 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 C -0.16 -1.17 8.50 37.16 0.32 -0.86 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.52 7.18 -51.93 -0.37 0.15 16 35 H 0.06 0.55 8.14 -51.94 -0.42 0.13 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 38 H 0.39 4.06 7.67 -40.82 -0.31 3.74 16 39 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 47 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -32.09 364.34 -9.72 -41.81 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.65 Total: 2.36 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.65 Total: -3.36 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.03 Total: -49.60 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.09 -9.72 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361550809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.314 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds