Wall clock time and date at job start Tue Mar 31 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.47334 * 2 1 4 4 C 1.52995 * 109.47329 * 240.00114 * 2 1 3 5 5 C 1.53000 * 109.47724 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47023 * 59.99449 * 5 4 2 7 7 C 1.52995 * 109.47320 * 300.00798 * 6 5 4 8 8 H 1.09000 * 109.47181 * 299.99645 * 7 6 5 9 9 C 1.53002 * 109.47320 * 179.97438 * 7 6 5 10 10 N 1.46499 * 109.47337 * 64.99502 * 9 7 6 11 11 C 1.34774 * 119.99966 * 180.02562 * 10 9 7 12 12 O 1.21592 * 120.00301 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46684 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.46953 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00344 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99769 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00300 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46755 * 89.99832 * 20 18 16 22 22 H 1.48495 * 109.46931 * 209.99846 * 20 18 16 23 23 H 1.48500 * 109.46738 * 330.00088 * 20 18 16 24 24 C 1.53000 * 109.47724 * 59.99632 * 7 6 5 25 25 H 1.08998 * 109.47573 * 180.02562 * 24 7 6 26 26 C 1.53002 * 109.46730 * 59.99803 * 24 7 6 27 27 H 1.09007 * 109.47068 * 300.00226 * 1 2 3 28 28 H 1.09006 * 109.47635 * 59.99595 * 1 2 3 29 29 H 1.08998 * 109.47525 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47181 * 299.99976 * 4 2 1 31 31 H 1.08998 * 109.47262 * 59.99974 * 4 2 1 32 32 H 1.08998 * 109.47573 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.46781 * 300.00231 * 5 4 2 34 34 H 1.08995 * 109.47370 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.46701 * 60.00290 * 6 5 4 36 36 H 1.09005 * 109.46767 * 304.99570 * 9 7 6 37 37 H 1.08996 * 109.47766 * 185.00092 * 9 7 6 38 38 H 0.96999 * 119.99984 * 359.97438 * 10 9 7 39 39 H 0.96995 * 120.00018 * 0.27633 * 13 11 10 40 40 H 1.09000 * 109.47212 * 300.00355 * 14 13 11 41 41 H 1.09001 * 109.46577 * 60.00430 * 14 13 11 42 42 H 1.09000 * 109.47486 * 300.00065 * 15 14 13 43 43 H 1.09001 * 109.47362 * 60.00788 * 15 14 13 44 44 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47075 * 60.00708 * 26 24 7 46 46 H 1.09004 * 109.46864 * 180.02562 * 26 24 7 47 47 H 1.08998 * 109.47319 * 300.00434 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5699 -0.7207 -1.2496 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 1 3.9334 0.3075 1.2487 9 6 4.0805 -1.4415 2.4982 10 7 5.5405 -1.3381 2.5599 11 6 6.2135 -1.9037 3.5815 12 8 5.6090 -2.5001 4.4517 13 7 7.5568 -1.8091 3.6380 14 6 8.2883 -2.4234 4.7488 15 6 9.7871 -2.1704 4.5741 16 6 10.5397 -2.8029 5.7164 17 1 10.0027 -3.3326 6.4893 18 6 11.9138 -2.7053 5.7747 19 7 12.5677 -2.0607 4.8332 20 14 12.8466 -3.4886 7.1910 21 1 13.2091 -4.8836 6.8334 22 1 14.0817 -2.7098 7.4610 23 1 11.9902 -3.4951 8.4041 24 6 2.0405 -0.7208 1.2493 25 1 1.6771 -0.2066 2.1390 26 6 1.5310 -2.1635 1.2496 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.9333 -1.2349 -2.1393 33 1 3.9329 0.3071 -1.2498 34 1 5.1704 -1.4408 -0.0003 35 1 3.7175 -2.4693 -0.0001 36 1 3.7921 -2.4918 2.4545 37 1 3.6459 -0.9821 3.3859 38 1 6.0229 -0.8633 1.8651 39 1 8.0388 -1.3305 2.9455 40 1 7.9537 -1.9868 5.6898 41 1 8.0993 -3.4968 4.7587 42 1 10.1220 -2.6067 3.6330 43 1 9.9758 -1.0969 4.5644 44 1 13.5344 -1.9923 4.8739 45 1 1.8947 -2.6771 2.1395 46 1 0.4410 -2.1639 1.2494 47 1 1.8944 -2.6773 0.3596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361550810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:52 Heat of formation + Delta-G solvation = -76.449094 kcal Electronic energy + Delta-G solvation = -22327.233331 eV Core-core repulsion = 19122.084135 eV Total energy + Delta-G solvation = -3205.149197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31201 -39.20195 -35.37617 -34.52507 -32.89011 -32.77721 -32.04476 -29.53261 -28.02184 -26.31679 -25.45831 -24.25246 -22.20990 -21.17618 -20.68793 -20.47230 -18.69821 -17.84585 -16.43104 -16.15579 -15.77931 -15.40788 -15.02216 -14.60767 -14.49040 -14.23358 -14.09106 -13.62568 -13.46558 -13.25046 -12.88906 -12.85871 -12.53927 -12.26156 -12.13081 -11.94134 -11.76830 -11.47028 -11.15836 -11.13065 -10.99751 -10.94600 -10.61105 -10.46162 -10.30760 -10.27205 -10.15685 -9.87894 -9.51918 -9.23176 -8.91921 -8.45366 -8.18656 -6.07040 -4.09461 3.13148 3.31295 3.37307 3.42227 3.66973 4.30418 4.32862 4.37192 4.43258 4.74097 4.77123 4.88082 4.96343 5.03596 5.06876 5.12482 5.25461 5.30042 5.30616 5.36597 5.45197 5.54726 5.62340 5.66734 5.71484 5.73581 5.79494 5.85300 5.90517 5.99419 6.05459 6.07339 6.11745 6.32936 6.34940 6.43983 6.70326 6.81987 7.05933 7.30737 7.60414 7.66554 7.92499 8.29198 8.50193 8.95840 9.06992 9.55117 11.04672 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044783 B = 0.002453 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.083414 B =11412.019816 C =11800.630952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.093 4.093 8 H 0.075 0.925 9 C 0.144 3.856 10 N -0.753 5.753 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.740 5.740 14 C 0.140 3.860 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 C -0.077 4.077 25 H 0.072 0.928 26 C -0.158 4.158 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.393 0.607 39 H 0.392 0.608 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.387 5.357 -14.529 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.112 4.112 8 H 0.094 0.906 9 C 0.020 3.980 10 N -0.410 5.410 11 C 0.397 3.603 12 O -0.479 6.479 13 N -0.393 5.393 14 C 0.018 3.982 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.096 4.096 25 H 0.090 0.910 26 C -0.215 4.215 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.226 0.774 39 H 0.225 0.775 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.757 4.831 -13.734 27.016 hybrid contribution 1.123 0.119 0.051 1.131 sum -21.634 4.950 -13.684 26.072 Atomic orbital electron populations 1.21890 0.95339 1.01986 1.01471 1.21120 0.95355 0.99294 0.94651 0.91329 1.21638 0.95579 1.00928 0.97227 1.21528 0.95600 1.00740 0.97802 1.21643 1.00403 0.99788 0.93631 1.21410 0.95595 0.99936 0.94295 0.90613 1.21214 0.79059 1.00710 0.97057 1.45157 1.07378 1.60999 1.27440 1.16084 0.82266 0.79872 0.82086 1.90883 1.68170 1.48346 1.40486 1.45531 1.04512 1.59564 1.29725 1.21573 0.93540 0.96474 0.86661 1.19325 0.87454 0.97686 0.98001 1.21063 0.91644 1.34703 1.08441 0.92220 1.25000 0.97756 0.95296 0.96309 1.69957 1.07989 1.42039 1.33417 0.86507 0.79257 0.79224 0.82541 1.20571 1.21201 1.19718 1.21049 0.93706 0.96834 0.97969 0.90978 1.22077 1.00920 0.96064 1.02425 0.92743 0.92937 0.92304 0.91623 0.92339 0.92054 0.92067 0.91857 0.91350 0.91625 0.92037 0.77387 0.77475 0.92864 0.92834 0.95998 0.95990 0.92890 0.92191 0.92524 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.84 37.15 0.33 -0.55 16 2 C -0.09 -0.56 2.49 -90.63 -0.23 -0.78 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.12 -0.74 4.93 -26.73 -0.13 -0.87 16 5 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 6 C -0.12 -0.91 4.80 -26.73 -0.13 -1.04 16 7 C -0.09 -0.76 2.00 -90.62 -0.18 -0.94 16 8 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 9 C 0.14 1.64 4.56 -4.04 -0.02 1.62 16 10 N -0.75 -9.80 5.29 -65.22 -0.34 -10.14 16 11 C 0.70 12.62 8.57 -86.92 -0.74 11.87 16 12 O -0.60 -13.35 16.34 5.28 0.09 -13.27 16 13 N -0.74 -13.48 5.56 -65.22 -0.36 -13.84 16 14 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.08 -0.56 2.25 -90.62 -0.20 -0.77 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 C -0.16 -1.18 7.79 37.16 0.29 -0.89 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 30 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 35 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 36 H 0.07 0.82 6.71 -51.93 -0.35 0.47 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.39 4.06 7.67 -40.82 -0.31 3.74 16 39 H 0.39 6.13 8.49 -40.82 -0.35 5.79 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 46 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 47 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -32.11 357.77 -9.61 -41.72 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.34 Total: 2.64 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.75 Total: -3.44 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.03 Total: -49.61 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.11 -9.61 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361550810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.731 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds