Wall clock time and date at job start Tue Mar 31 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46866 * 2 1 4 4 C 1.52996 * 109.47442 * 239.99576 * 2 1 3 5 5 C 1.53000 * 109.47239 * 300.00205 * 4 2 1 6 6 C 1.53002 * 109.46613 * 299.99796 * 5 4 2 7 7 C 1.52997 * 109.47520 * 60.00201 * 6 5 4 8 8 H 1.09003 * 109.47041 * 59.99470 * 7 6 5 9 9 C 1.52998 * 109.47107 * 179.97438 * 7 6 5 10 10 N 1.46501 * 109.47299 * 294.99528 * 9 7 6 11 11 C 1.34769 * 119.99820 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00330 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00360 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47058 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 C 1.53002 * 109.47215 * 119.99287 * 2 1 3 25 25 H 1.09003 * 109.47396 * 180.02562 * 24 2 1 26 26 C 1.52997 * 109.47520 * 300.00517 * 24 2 1 27 27 H 1.09006 * 109.47605 * 300.00250 * 1 2 3 28 28 H 1.09003 * 109.47296 * 60.00610 * 1 2 3 29 29 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46953 * 60.00194 * 4 2 1 31 31 H 1.09000 * 109.47306 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.46843 * 59.99717 * 5 4 2 33 33 H 1.08996 * 109.47060 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.47396 * 299.99889 * 6 5 4 35 35 H 1.09002 * 109.46621 * 180.02562 * 6 5 4 36 36 H 1.09008 * 109.46536 * 174.99908 * 9 7 6 37 37 H 1.08998 * 109.47239 * 55.00416 * 9 7 6 38 38 H 0.97001 * 119.99369 * 0.02562 * 10 9 7 39 39 H 0.97006 * 119.99489 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.47073 * 59.99564 * 14 13 11 41 41 H 1.08997 * 109.46623 * 299.99849 * 14 13 11 42 42 H 1.09004 * 109.47139 * 60.00089 * 15 14 13 43 43 H 1.08997 * 109.47675 * 299.99688 * 15 14 13 44 44 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 45 45 H 1.08991 * 109.47441 * 179.97438 * 26 24 2 46 46 H 1.09007 * 109.47051 * 300.00125 * 26 24 2 47 47 H 1.09003 * 109.47041 * 59.99470 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2491 6 6 2.0401 -2.8849 0.0002 7 6 1.5300 -2.1637 1.2494 8 1 0.4400 -2.1637 1.2494 9 6 2.0396 -2.8852 2.4987 10 7 1.4550 -4.2271 2.5602 11 6 1.7627 -5.0499 3.5823 12 8 2.5250 -4.6784 4.4535 13 7 1.2252 -6.2846 3.6386 14 6 1.5592 -7.1789 4.7499 15 6 0.8209 -8.5075 4.5749 16 6 1.1650 -9.4276 5.7178 17 1 1.8422 -9.0977 6.4917 18 6 0.6153 -10.6907 5.7754 19 7 0.9152 -11.4936 6.7730 20 14 -0.5554 -11.2618 4.4364 21 1 0.2167 -11.9175 3.3504 22 1 -1.2873 -10.0924 3.8869 23 1 -1.5262 -12.2297 5.0074 24 6 2.0400 -0.7211 1.2493 25 1 3.1300 -0.7207 1.2496 26 6 1.5299 0.0001 2.4985 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2493 32 1 0.4401 -2.1638 -1.2491 33 1 1.8930 -2.6775 -2.1392 34 1 3.1301 -2.8849 0.0003 35 1 1.6771 -3.9127 0.0000 36 1 1.7511 -2.3222 3.3864 37 1 3.1258 -2.9637 2.4553 38 1 0.8464 -4.5233 1.8653 39 1 0.6167 -6.5808 2.9437 40 1 1.2584 -6.7175 5.6906 41 1 2.6342 -7.3588 4.7609 42 1 1.1214 -8.9690 3.6343 43 1 -0.2540 -8.3273 4.5642 44 1 0.5288 -12.3824 6.8133 45 1 1.8929 -0.5138 3.3885 46 1 1.8932 1.0279 2.4985 47 1 0.4399 0.0001 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361550811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:54 Heat of formation + Delta-G solvation = -71.399438 kcal Electronic energy + Delta-G solvation = -22484.817885 eV Core-core repulsion = 19279.887658 eV Total energy + Delta-G solvation = -3204.930227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36279 -39.27981 -35.42835 -34.58978 -33.17965 -32.79918 -31.93237 -29.95234 -28.03053 -26.58526 -25.44750 -24.30018 -21.93574 -21.20315 -20.75881 -20.58560 -18.84774 -17.94099 -16.85694 -16.11372 -15.59644 -15.48611 -15.27512 -14.53676 -14.50909 -14.25645 -14.17197 -13.74042 -13.62824 -13.34491 -12.99542 -12.74633 -12.58180 -12.39356 -12.21389 -12.00277 -11.86948 -11.57433 -11.45320 -11.27518 -11.15139 -10.96625 -10.52038 -10.35912 -10.26500 -10.22835 -10.19753 -9.95156 -9.71059 -9.29932 -8.98224 -8.60538 -8.32224 -6.08995 -4.08781 3.04837 3.26451 3.33941 3.35395 3.58986 4.27640 4.28341 4.34510 4.39423 4.62080 4.71089 4.82753 4.90018 5.00778 5.04349 5.12404 5.19468 5.23933 5.26126 5.32848 5.46094 5.48992 5.58914 5.62993 5.66916 5.72675 5.77554 5.81492 5.89382 5.92546 5.95279 6.06916 6.10720 6.14288 6.26691 6.28600 6.60045 6.65759 6.86646 7.09463 7.27811 7.34700 7.70041 8.35283 8.48950 8.95168 8.98332 9.51201 11.04127 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031004 B = 0.002761 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.896079 B =10137.396209 C =10622.744882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.095 4.095 8 H 0.079 0.921 9 C 0.142 3.858 10 N -0.752 5.752 11 C 0.698 3.302 12 O -0.596 6.596 13 N -0.743 5.743 14 C 0.149 3.851 15 C -0.021 4.021 16 C -0.521 4.521 17 H 0.076 0.924 18 C 0.068 3.932 19 N -0.899 5.899 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.266 1.266 23 H -0.287 1.287 24 C -0.077 4.077 25 H 0.072 0.928 26 C -0.156 4.156 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.392 0.608 39 H 0.391 0.609 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.021 0.979 44 H 0.264 0.736 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 23.904 -18.672 30.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.114 4.114 8 H 0.098 0.902 9 C 0.017 3.983 10 N -0.409 5.409 11 C 0.398 3.602 12 O -0.474 6.474 13 N -0.397 5.397 14 C 0.026 3.974 15 C -0.059 4.059 16 C -0.560 4.560 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.191 1.191 23 H -0.213 1.213 24 C -0.096 4.096 25 H 0.091 0.909 26 C -0.213 4.213 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.225 0.775 39 H 0.223 0.777 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.752 24.049 -17.740 29.894 hybrid contribution -1.172 -0.775 -1.296 1.912 sum -1.924 23.274 -19.036 30.129 Atomic orbital electron populations 1.22005 0.95379 1.02190 1.01506 1.21101 0.95972 0.98939 0.94322 0.91292 1.21572 1.00580 0.95725 0.97396 1.21570 1.00991 0.95561 0.97738 1.21602 1.01145 0.98805 0.93716 1.21473 1.01122 0.94680 0.94092 0.90234 1.21270 0.97959 0.81551 0.97512 1.45149 1.52535 1.15881 1.27336 1.16045 0.81130 0.80906 0.82143 1.90899 1.40192 1.76032 1.40303 1.45521 1.50706 1.13977 1.29516 1.21357 0.99925 0.89227 0.86919 1.19792 0.95884 0.92160 0.98088 1.20931 1.28933 0.97971 1.08150 0.90584 1.25006 0.96207 0.96471 0.95657 1.69908 1.44384 1.08374 1.31089 0.86742 0.81245 0.78748 0.82256 1.20260 1.19108 1.21316 1.21063 1.00375 0.93420 0.94727 0.90914 1.22005 1.01546 1.00165 0.97611 0.92421 0.93066 0.92016 0.92197 0.92023 0.91699 0.92147 0.91709 0.91853 0.91443 0.91979 0.77460 0.77675 0.92205 0.92219 0.96500 0.96059 0.92579 0.91964 0.92717 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.15 37.15 0.30 -0.62 16 2 C -0.08 -0.52 2.72 -90.62 -0.25 -0.77 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.12 -0.70 5.45 -26.73 -0.15 -0.84 16 5 C -0.12 -0.77 5.65 -26.73 -0.15 -0.92 16 6 C -0.12 -0.84 5.08 -26.73 -0.14 -0.98 16 7 C -0.09 -0.73 1.48 -90.62 -0.13 -0.86 16 8 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 9 C 0.14 1.54 4.85 -4.04 -0.02 1.52 16 10 N -0.75 -9.22 5.29 -65.23 -0.34 -9.56 16 11 C 0.70 12.06 8.57 -86.92 -0.74 11.32 16 12 O -0.60 -12.91 16.34 5.29 0.09 -12.83 16 13 N -0.74 -12.69 5.56 -65.23 -0.36 -13.05 16 14 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 15 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 16 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 17 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 20 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 C -0.08 -0.54 2.02 -90.62 -0.18 -0.72 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 C -0.16 -1.12 8.50 37.16 0.32 -0.81 16 27 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.38 4.81 -51.93 -0.25 0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 36 H 0.07 0.80 6.18 -51.92 -0.32 0.48 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.39 3.71 7.67 -40.82 -0.31 3.39 16 39 H 0.39 5.49 8.49 -40.82 -0.35 5.14 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 43 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 46 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 47 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -32.82 353.72 -9.17 -41.98 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.27 Total: 2.83 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.71 Total: -4.41 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.07 Total: -49.41 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.82 -9.17 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361550811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.418 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds