Wall clock time and date at job start Tue Mar 31 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50588 * 2 1 4 4 C 1.53094 * 109.51026 * 239.90833 * 2 1 3 5 5 N 1.47010 * 109.25970 * 183.17364 * 4 2 1 6 6 C 1.46905 * 111.00171 * 182.39138 * 5 4 2 7 7 C 1.52993 * 109.47470 * 164.60177 * 6 5 4 8 8 C 1.53040 * 109.46137 * 294.90037 * 7 6 5 9 9 C 1.53200 * 109.31504 * 178.61442 * 8 7 6 10 10 N 1.46925 * 108.77520 * 54.62699 * 9 8 7 11 11 C 1.36940 * 120.62325 * 126.36994 * 10 9 8 12 12 H 1.07995 * 120.00345 * 329.62675 * 11 10 9 13 13 C 1.38817 * 119.99443 * 149.63161 * 11 10 9 14 14 N 1.31619 * 119.99803 * 348.56778 * 13 11 10 15 15 Si 1.86795 * 119.99774 * 168.57089 * 13 11 10 16 16 H 1.48504 * 109.47063 * 179.97438 * 15 13 11 17 17 H 1.48497 * 109.47202 * 299.99400 * 15 13 11 18 18 H 1.48502 * 109.47471 * 59.99652 * 15 13 11 19 19 C 1.46921 * 118.74050 * 306.64777 * 10 9 8 20 20 C 1.52760 * 109.00774 * 53.30944 * 19 10 9 21 21 C 1.47013 * 110.75313 * 58.62011 * 5 4 2 22 22 C 1.53100 * 109.25408 * 301.38083 * 21 5 4 23 23 H 1.09004 * 109.50599 * 296.91763 * 22 21 5 24 24 C 1.53003 * 109.50522 * 176.78420 * 22 21 5 25 25 O 1.43017 * 109.25862 * 56.85212 * 22 21 5 26 26 H 1.09001 * 109.47185 * 180.08711 * 1 2 3 27 27 H 1.08994 * 109.47206 * 300.09179 * 1 2 3 28 28 H 1.09007 * 109.46893 * 60.08857 * 1 2 3 29 29 H 1.09007 * 109.50329 * 63.23794 * 4 2 1 30 30 H 1.09001 * 109.50510 * 303.11318 * 4 2 1 31 31 H 1.09001 * 109.46733 * 44.60136 * 6 5 4 32 32 H 1.09002 * 109.47189 * 284.60789 * 6 5 4 33 33 H 1.09002 * 109.44895 * 54.85927 * 7 6 5 34 34 H 1.08998 * 109.50423 * 58.65598 * 8 7 6 35 35 H 1.09000 * 109.49823 * 298.56094 * 8 7 6 36 36 H 1.09000 * 109.58113 * 294.84279 * 9 8 7 37 37 H 1.09001 * 109.70248 * 174.48848 * 9 8 7 38 38 H 0.97007 * 119.99473 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.58145 * 173.13836 * 19 10 9 40 40 H 1.08996 * 109.58831 * 293.56741 * 19 10 9 41 41 H 1.08999 * 109.56675 * 185.55040 * 20 19 10 42 42 H 1.09003 * 109.36231 * 65.49763 * 20 19 10 43 43 H 1.08995 * 109.51080 * 61.31899 * 21 5 4 44 44 H 1.09002 * 109.50741 * 181.45033 * 21 5 4 45 45 H 1.08996 * 109.47054 * 300.21471 * 24 22 21 46 46 H 1.09003 * 109.46834 * 60.22266 * 24 22 21 47 47 H 1.08999 * 109.46937 * 180.21960 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2485 5 7 3.5094 -0.7871 -1.2051 6 6 4.0448 -1.4252 -2.4152 7 6 5.5435 -1.1374 -2.5230 8 6 5.7610 0.3633 -2.7291 9 6 7.2638 0.6523 -2.8020 10 7 7.8577 -0.1928 -3.8469 11 6 8.6058 0.3617 -4.8510 12 1 8.3927 1.3637 -5.1929 13 6 9.6379 -0.3643 -5.4294 14 7 10.0461 -1.4852 -4.8733 15 14 10.4476 0.2498 -6.9967 16 1 11.5143 -0.6984 -7.4071 17 1 9.4302 0.3473 -8.0740 18 1 11.0424 1.5888 -6.7549 19 6 7.6286 -1.6432 -3.7975 20 6 6.1264 -1.9069 -3.7105 21 6 3.9649 -1.4869 0.0049 22 6 3.4343 -0.7557 1.2410 23 1 3.8537 0.2498 1.2769 24 6 3.8375 -1.5239 2.5012 25 8 2.0083 -0.6760 1.1660 26 1 -0.3633 -1.0277 0.0016 27 1 -0.3633 0.5152 0.8891 28 1 -0.3633 0.5125 -0.8908 29 1 1.7267 -0.1792 -2.1390 30 1 1.6338 -1.7341 -1.2761 31 1 3.5343 -1.0269 -3.2920 32 1 3.8846 -2.5019 -2.3594 33 1 6.0407 -1.4537 -1.6060 34 1 5.3251 0.9123 -1.8944 35 1 5.2851 0.6756 -3.6587 36 1 7.7264 0.4251 -1.8415 37 1 7.4247 1.7024 -3.0459 38 1 10.7677 -1.9923 -5.2773 39 1 8.0279 -2.1070 -4.6995 40 1 8.1216 -2.0613 -2.9200 41 1 5.9504 -2.9739 -3.5742 42 1 5.6470 -1.5733 -4.6308 43 1 3.5882 -2.5097 -0.0025 44 1 5.0545 -1.4999 0.0295 45 1 3.4192 -2.5296 2.4631 46 1 4.9244 -1.5842 2.5578 47 1 3.4562 -1.0049 3.3806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363664651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:40 Heat of formation + Delta-G solvation = -34.576418 kcal Electronic energy + Delta-G solvation = -23559.940908 eV Core-core repulsion = 20356.607447 eV Total energy + Delta-G solvation = -3203.333461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.95354 -37.80977 -35.66433 -33.86030 -33.06875 -30.92796 -30.19554 -29.56957 -27.07008 -26.83159 -24.63036 -22.79577 -22.13676 -21.92973 -20.60379 -20.31427 -18.93248 -16.79361 -16.61226 -16.10441 -15.48138 -15.10214 -14.82985 -14.53427 -13.93274 -13.81795 -13.46108 -13.36073 -12.98985 -12.93135 -12.75594 -12.39307 -12.35520 -12.15463 -12.09544 -11.81663 -11.69842 -11.26850 -11.16570 -11.07147 -10.86065 -10.66641 -10.57764 -10.40445 -10.12002 -10.04072 -9.82553 -9.58822 -9.40042 -9.26302 -8.41586 -8.30644 -6.53827 -5.71957 -3.18143 3.41147 3.46077 3.47429 3.51802 3.78980 4.54054 4.61422 4.82068 4.83936 4.98176 5.04155 5.21103 5.25490 5.31954 5.35975 5.41924 5.44936 5.48410 5.54211 5.58608 5.67808 5.75403 5.76197 5.80816 5.89236 5.93684 5.96115 6.01428 6.06156 6.24454 6.28566 6.48699 6.70428 6.73904 6.81312 6.94616 6.96597 6.99564 7.07929 7.15531 7.18430 7.48020 7.76034 7.84390 8.54650 9.29731 9.92487 10.50841 11.36034 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033651 B = 0.003511 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.871832 B = 7973.295150 C = 8240.342693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 H 0.066 0.934 4 C 0.024 3.976 5 N -0.533 5.533 6 C 0.062 3.938 7 C -0.071 4.071 8 C -0.116 4.116 9 C 0.144 3.856 10 N -0.593 5.593 11 C -0.249 4.249 12 H 0.063 0.937 13 C 0.001 3.999 14 N -0.907 5.907 15 Si 0.904 3.096 16 H -0.291 1.291 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.174 3.826 20 C -0.136 4.136 21 C 0.023 3.977 22 C 0.091 3.909 23 H 0.067 0.933 24 C -0.144 4.144 25 O -0.384 6.384 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.013 0.987 37 H 0.049 0.951 38 H 0.253 0.747 39 H 0.087 0.913 40 H 0.014 0.986 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.090 0.910 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.841 -0.086 10.775 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.084 0.916 4 C -0.104 4.104 5 N -0.257 5.257 6 C -0.066 4.066 7 C -0.090 4.090 8 C -0.155 4.155 9 C 0.018 3.982 10 N -0.316 5.316 11 C -0.379 4.379 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.552 5.552 15 Si 0.734 3.266 16 H -0.217 1.217 17 H -0.211 1.211 18 H -0.209 1.209 19 C 0.048 3.952 20 C -0.176 4.176 21 C -0.105 4.105 22 C 0.033 3.967 23 H 0.085 0.915 24 C -0.201 4.201 25 O -0.304 6.304 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.627 0.212 10.863 19.863 hybrid contribution 0.345 -0.560 -1.133 1.310 sum -16.283 -0.348 9.730 18.972 Atomic orbital electron populations 1.21740 0.93044 1.02773 1.02529 1.22112 0.94485 0.95732 0.84427 0.91596 1.22805 0.88637 0.99834 0.99152 1.62183 1.07774 1.53207 1.02527 1.22307 0.97164 0.95827 0.91283 1.21024 0.92139 0.97127 0.98735 1.21904 0.98479 0.94702 1.00399 1.20939 0.90920 0.94769 0.91570 1.44011 1.58680 1.02216 1.26726 1.19161 1.08184 1.00254 1.10336 0.91970 1.25128 0.96545 0.98220 0.99781 1.69980 1.29206 1.16656 1.39331 0.86351 0.78836 0.77958 0.83472 1.21660 1.21068 1.20918 1.20647 0.88546 0.84825 1.01191 1.22171 1.01139 0.97369 0.96930 1.22852 1.01723 0.95726 0.90189 1.22143 0.80958 0.99219 0.94411 0.91516 1.21744 1.01611 1.00533 0.96242 1.87946 1.21186 1.78486 1.42750 0.92031 0.91700 0.90967 0.89849 0.94398 0.91061 0.95222 0.92147 0.92303 0.93083 0.96888 0.93205 0.93678 0.89487 0.96800 0.93764 0.92859 0.94351 0.89154 0.92040 0.90734 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.57 37.16 0.36 -0.84 16 2 C 0.09 0.97 3.42 -26.68 -0.09 0.88 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.02 0.28 4.91 -3.72 -0.02 0.26 16 5 N -0.53 -7.01 4.12 -234.31 -0.97 -7.97 16 6 C 0.06 0.88 4.36 -3.82 -0.02 0.86 16 7 C -0.07 -1.21 2.16 -90.59 -0.20 -1.41 16 8 C -0.12 -2.10 5.26 -26.61 -0.14 -2.24 16 9 C 0.14 3.14 6.52 -3.71 -0.02 3.12 16 10 N -0.59 -15.27 2.99 -172.58 -0.52 -15.78 16 11 C -0.25 -7.00 9.59 -15.06 -0.14 -7.15 16 12 H 0.06 1.71 7.85 -52.49 -0.41 1.30 16 13 C 0.00 0.04 5.04 -17.43 -0.09 -0.05 16 14 N -0.91 -26.69 11.04 55.49 0.61 -26.08 16 15 Si 0.90 21.99 29.57 -169.99 -5.03 16.97 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.17 4.23 5.23 -3.94 -0.02 4.21 16 20 C -0.14 -2.64 5.34 -26.84 -0.14 -2.78 16 21 C 0.02 0.29 4.75 -3.71 -0.02 0.27 16 22 C 0.09 1.04 3.43 -26.68 -0.09 0.94 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 24 C -0.14 -1.35 9.57 37.16 0.36 -0.99 16 25 O -0.38 -4.72 10.11 -35.23 -0.36 -5.08 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 32 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.06 1.06 6.54 -51.93 -0.34 0.72 16 34 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 38 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 1.17 6.53 -51.93 -0.34 0.83 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 355.42 15.07 5.36 5.36 Total: -1.00 -29.98 355.42 -10.12 -40.10 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.94 Total: -2.60 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.28 Total: -4.90 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.87 Total: -49.84 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.36 Total: -5.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.98 -10.12 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363664651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.525 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds