Wall clock time and date at job start Tue Mar 31 2020 06:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.50459 * 2 1 4 4 C 1.53097 * 109.50728 * 239.91628 * 2 1 3 5 5 N 1.47017 * 109.25547 * 183.21305 * 4 2 1 6 6 C 1.46902 * 110.99764 * 182.39043 * 5 4 2 7 7 C 1.52996 * 109.47127 * 169.99946 * 6 5 4 8 8 C 1.53046 * 109.46072 * 175.00005 * 7 6 5 9 9 C 1.53192 * 109.33981 * 181.37247 * 8 7 6 10 10 N 1.46938 * 108.77026 * 305.41317 * 9 8 7 11 11 C 1.36930 * 120.60307 * 233.57630 * 10 9 8 12 12 H 1.07996 * 120.00394 * 27.66273 * 11 10 9 13 13 C 1.38816 * 120.00154 * 207.65921 * 11 10 9 14 14 N 1.31623 * 119.99748 * 17.35845 * 13 11 10 15 15 Si 1.86801 * 120.00255 * 197.36421 * 13 11 10 16 16 H 1.48496 * 109.47323 * 89.99826 * 15 13 11 17 17 H 1.48501 * 109.46818 * 209.99924 * 15 13 11 18 18 H 1.48500 * 109.46759 * 329.99662 * 15 13 11 19 19 C 1.46921 * 118.76297 * 53.55544 * 10 9 8 20 20 C 1.53037 * 109.46245 * 295.07073 * 7 6 5 21 21 C 1.47012 * 110.75466 * 58.61774 * 5 4 2 22 22 C 1.53101 * 109.25439 * 301.38019 * 21 5 4 23 23 H 1.08999 * 109.50550 * 176.77738 * 22 21 5 24 24 C 1.52996 * 109.50604 * 296.91484 * 22 21 5 25 25 O 1.43011 * 109.51037 * 120.12703 * 2 1 3 26 26 H 1.09001 * 109.46906 * 180.08543 * 1 2 3 27 27 H 1.08998 * 109.47370 * 300.08281 * 1 2 3 28 28 H 1.09003 * 109.47550 * 60.09019 * 1 2 3 29 29 H 1.08998 * 109.50780 * 63.28141 * 4 2 1 30 30 H 1.09004 * 109.54487 * 303.16544 * 4 2 1 31 31 H 1.09004 * 109.47501 * 50.00156 * 6 5 4 32 32 H 1.09007 * 109.47241 * 290.00148 * 6 5 4 33 33 H 1.09004 * 109.44939 * 55.03648 * 7 6 5 34 34 H 1.09000 * 109.49625 * 301.33659 * 8 7 6 35 35 H 1.08999 * 109.49769 * 61.40275 * 8 7 6 36 36 H 1.08999 * 109.58731 * 65.16609 * 9 8 7 37 37 H 1.08997 * 109.58721 * 185.59092 * 9 8 7 38 38 H 0.96998 * 119.99441 * 180.02562 * 14 13 11 39 39 H 1.09001 * 109.58442 * 186.62455 * 19 10 9 40 40 H 1.09003 * 109.70657 * 66.26825 * 19 10 9 41 41 H 1.09001 * 109.49590 * 298.56419 * 20 7 6 42 42 H 1.08997 * 109.50136 * 58.62947 * 20 7 6 43 43 H 1.09006 * 109.50621 * 61.31124 * 21 5 4 44 44 H 1.09003 * 109.50843 * 181.44773 * 21 5 4 45 45 H 1.09001 * 109.46832 * 179.78386 * 24 22 21 46 46 H 1.08999 * 109.47398 * 299.78134 * 24 22 21 47 47 H 1.08997 * 109.47190 * 59.78170 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7878 -1.2047 6 6 4.0447 -1.4258 -2.4149 7 6 5.5644 -1.2535 -2.4524 8 6 6.1355 -2.0234 -3.6455 9 6 7.6604 -1.8773 -3.6606 10 7 7.9985 -0.4475 -3.6466 11 6 8.8293 0.0818 -4.5977 12 1 8.8899 -0.3731 -5.5753 13 6 9.5937 1.2031 -4.3054 14 7 9.7920 1.5561 -3.0530 15 14 10.3407 2.2110 -5.6894 16 1 9.3875 3.2738 -6.0981 17 1 11.6052 2.8334 -5.2216 18 1 10.6234 1.3270 -6.8486 19 6 7.4282 0.4036 -2.5934 20 6 5.9060 0.2318 -2.5909 21 6 3.9640 -1.4882 0.0052 22 6 3.4335 -0.7571 1.2413 23 1 3.7200 -1.3049 2.1390 24 6 4.0229 0.6538 1.2924 25 8 2.0076 -0.6766 1.1659 26 1 -0.3633 -1.0277 0.0015 27 1 -0.3634 0.5151 0.8892 28 1 -0.3634 0.5124 -0.8908 29 1 1.7273 -0.1786 -2.1391 30 1 1.6333 -1.7338 -1.2775 31 1 3.6043 -0.9598 -3.2965 32 1 3.7995 -2.4878 -2.4046 33 1 5.9965 -1.6410 -1.5297 34 1 5.8719 -3.0775 -3.5581 35 1 5.7222 -1.6205 -4.5701 36 1 8.0826 -2.3608 -2.7797 37 1 8.0628 -2.3397 -4.5619 38 1 10.3258 2.3398 -2.8488 39 1 7.6780 1.4460 -2.7908 40 1 7.8307 0.1086 -1.6243 41 1 5.4953 0.6139 -3.5255 42 1 5.4786 0.7831 -1.7534 43 1 3.5866 -2.5109 -0.0028 44 1 5.0537 -1.5018 0.0301 45 1 3.6418 1.1751 2.1706 46 1 5.1096 0.5918 1.3499 47 1 3.7372 1.1998 0.3934 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363664653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:43 Heat of formation + Delta-G solvation = -30.649883 kcal Electronic energy + Delta-G solvation = -23893.639951 eV Core-core repulsion = 20690.476757 eV Total energy + Delta-G solvation = -3203.163194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.09740 -37.82939 -35.64710 -33.47678 -33.06879 -30.89399 -30.01386 -29.65177 -27.01631 -26.88332 -24.58888 -23.05881 -22.60987 -21.96701 -20.48407 -19.50010 -18.91366 -16.75655 -16.44873 -16.30967 -15.36590 -15.13634 -14.70970 -14.60534 -13.98706 -13.83959 -13.53424 -13.38777 -13.02448 -12.90046 -12.56395 -12.51098 -12.17763 -12.05680 -11.91929 -11.73448 -11.59193 -11.34683 -11.22173 -11.07268 -10.90797 -10.67711 -10.40906 -10.25528 -10.11961 -10.01247 -9.83534 -9.57254 -9.36966 -9.26742 -8.40304 -8.23824 -6.59701 -5.72491 -3.14220 3.41097 3.47795 3.48891 3.63643 3.84648 4.54667 4.69403 4.81791 4.91073 5.01945 5.10153 5.22793 5.31726 5.33626 5.39009 5.43614 5.49355 5.50783 5.56091 5.68915 5.69967 5.73512 5.84153 5.90463 5.94876 5.95890 5.98353 6.07356 6.18219 6.28921 6.36939 6.43951 6.61343 6.75929 6.83286 6.97026 6.97779 7.02258 7.09379 7.12009 7.19029 7.51495 7.76452 7.85812 8.52016 9.28571 9.92533 10.49515 11.35602 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027084 B = 0.003940 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.558408 B = 7104.505106 C = 7378.741599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.025 3.975 5 N -0.527 5.527 6 C 0.062 3.938 7 C -0.073 4.073 8 C -0.128 4.128 9 C 0.147 3.853 10 N -0.593 5.593 11 C -0.251 4.251 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.903 5.903 15 Si 0.901 3.099 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.280 1.280 19 C 0.171 3.829 20 C -0.123 4.123 21 C 0.022 3.978 22 C 0.091 3.909 23 H 0.102 0.898 24 C -0.175 4.175 25 O -0.382 6.382 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.051 0.949 38 H 0.252 0.748 39 H 0.084 0.916 40 H 0.013 0.987 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 -4.726 6.760 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.088 0.912 4 C -0.104 4.104 5 N -0.252 5.252 6 C -0.065 4.065 7 C -0.092 4.092 8 C -0.167 4.167 9 C 0.021 3.979 10 N -0.316 5.316 11 C -0.380 4.380 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.547 5.547 15 Si 0.731 3.269 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.205 1.205 19 C 0.045 3.955 20 C -0.162 4.162 21 C -0.106 4.106 22 C 0.034 3.966 23 H 0.119 0.881 24 C -0.233 4.233 25 O -0.301 6.301 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.369 -4.187 6.964 18.275 hybrid contribution 0.332 -0.246 -0.942 1.028 sum -16.037 -4.433 6.022 17.695 Atomic orbital electron populations 1.21742 0.93203 1.02687 1.02488 1.22134 0.94325 0.96223 0.84516 0.91189 1.22791 0.88643 0.99758 0.99165 1.62153 1.07680 1.52985 1.02341 1.22285 0.96890 0.95730 0.91620 1.21054 0.91852 0.98061 0.98262 1.22039 0.99230 0.97624 0.97841 1.20854 0.91430 0.87236 0.98401 1.44076 1.53478 1.01819 1.32218 1.19205 1.16675 1.10468 0.91700 0.91826 1.25013 0.97740 1.01112 0.95831 1.70048 1.41536 1.26946 1.16201 0.86313 0.78295 0.80538 0.81778 1.21501 1.21820 1.20511 1.20782 0.87252 0.97425 0.90049 1.22079 0.99979 0.93786 1.00376 1.22831 1.01904 0.95373 0.90494 1.22254 0.80387 0.96711 0.97295 0.88069 1.22277 1.01746 0.96704 1.02543 1.87995 1.21136 1.78155 1.42827 0.92110 0.91726 0.91048 0.89957 0.94502 0.91007 0.95567 0.92093 0.93660 0.92449 0.96796 0.93056 0.93749 0.89776 0.96901 0.93393 0.92365 0.94541 0.88944 0.92731 0.91290 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.57 37.16 0.36 -0.88 16 2 C 0.09 0.94 3.02 -26.68 -0.08 0.86 16 3 H 0.07 0.80 6.50 -51.92 -0.34 0.46 16 4 C 0.02 0.29 4.93 -3.71 -0.02 0.27 16 5 N -0.53 -6.92 3.52 -234.30 -0.82 -7.75 16 6 C 0.06 0.87 4.35 -3.82 -0.02 0.85 16 7 C -0.07 -1.22 2.08 -90.58 -0.19 -1.41 16 8 C -0.13 -2.23 5.36 -26.61 -0.14 -2.37 16 9 C 0.15 3.14 6.52 -3.70 -0.02 3.12 16 10 N -0.59 -15.12 3.00 -172.32 -0.52 -15.64 16 11 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 12 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 13 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 14 N -0.90 -26.57 11.19 55.49 0.62 -25.95 16 15 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.17 4.13 5.31 -3.71 -0.02 4.11 16 20 C -0.12 -2.39 5.26 -26.61 -0.14 -2.53 16 21 C 0.02 0.28 4.86 -3.71 -0.02 0.26 16 22 C 0.09 1.07 3.92 -26.68 -0.10 0.96 16 23 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 24 C -0.18 -2.06 8.88 37.16 0.33 -1.73 16 25 O -0.38 -4.79 10.28 -35.23 -0.36 -5.16 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.03 0.35 8.12 -51.92 -0.42 -0.07 16 33 H 0.06 1.05 6.30 -51.93 -0.33 0.72 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.08 2.30 6.04 -51.93 -0.31 1.99 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 1.08 7.71 -51.93 -0.40 0.68 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 1.23 6.29 -51.93 -0.33 0.90 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.95 6.13 -51.93 -0.32 0.63 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -29.79 350.63 -9.86 -39.65 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.74 Total: -1.71 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.30 Total: -5.68 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.72 Total: -49.34 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.36 Total: -5.16 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.79 -9.86 -39.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363664653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.000 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds