Wall clock time and date at job start Tue Mar 31 2020 06:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.54290 * 2 1 4 4 C 1.53096 * 109.50364 * 120.11178 * 2 1 3 5 5 N 1.47012 * 109.26172 * 63.08334 * 4 2 1 6 6 C 1.46898 * 111.00351 * 182.39462 * 5 4 2 7 7 C 1.53004 * 109.47352 * 164.80014 * 6 5 4 8 8 C 1.53040 * 109.45683 * 296.14775 * 7 6 5 9 9 C 1.53191 * 109.30970 * 178.61622 * 8 7 6 10 10 N 1.46927 * 108.78049 * 54.63258 * 9 8 7 11 11 C 1.36927 * 120.63121 * 126.36734 * 10 9 8 12 12 H 1.08002 * 120.00228 * 334.50622 * 11 10 9 13 13 C 1.38808 * 120.00301 * 154.50829 * 11 10 9 14 14 N 1.31626 * 119.99582 * 332.47130 * 13 11 10 15 15 Si 1.86802 * 120.00653 * 152.46938 * 13 11 10 16 16 H 1.48501 * 109.47054 * 265.01071 * 15 13 11 17 17 H 1.48500 * 109.46728 * 25.00969 * 15 13 11 18 18 H 1.48498 * 109.47102 * 145.00839 * 15 13 11 19 19 C 1.46925 * 118.73472 * 306.64695 * 10 9 8 20 20 C 1.52761 * 109.01046 * 53.30539 * 19 10 9 21 21 C 1.47014 * 110.75051 * 58.61549 * 5 4 2 22 22 C 1.53094 * 109.25933 * 301.38402 * 21 5 4 23 23 H 1.08998 * 109.50679 * 296.91259 * 22 21 5 24 24 C 1.53004 * 109.50600 * 176.78031 * 22 21 5 25 25 O 1.43016 * 109.50644 * 239.88893 * 2 1 3 26 26 H 1.08994 * 109.47372 * 299.89597 * 1 2 3 27 27 H 1.09005 * 109.46549 * 59.89078 * 1 2 3 28 28 H 1.08993 * 109.47184 * 179.88875 * 1 2 3 29 29 H 1.09006 * 109.50621 * 303.15158 * 4 2 1 30 30 H 1.09000 * 109.51107 * 183.02146 * 4 2 1 31 31 H 1.09006 * 109.47304 * 44.79999 * 6 5 4 32 32 H 1.08995 * 109.47094 * 284.80224 * 6 5 4 33 33 H 1.08995 * 109.44581 * 56.11339 * 7 6 5 34 34 H 1.08998 * 109.50227 * 58.66060 * 8 7 6 35 35 H 1.09005 * 109.49769 * 298.56287 * 8 7 6 36 36 H 1.09010 * 109.58388 * 294.84268 * 9 8 7 37 37 H 1.09004 * 109.70475 * 174.49568 * 9 8 7 38 38 H 0.96998 * 119.99881 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.58538 * 173.14203 * 19 10 9 40 40 H 1.09003 * 109.58644 * 293.56359 * 19 10 9 41 41 H 1.08999 * 109.56244 * 185.54931 * 20 19 10 42 42 H 1.09004 * 109.35949 * 65.50083 * 20 19 10 43 43 H 1.08996 * 109.50339 * 61.32181 * 21 5 4 44 44 H 1.09002 * 109.50644 * 181.44821 * 21 5 4 45 45 H 1.09000 * 109.47475 * 300.22178 * 24 22 21 46 46 H 1.09004 * 109.46798 * 60.22175 * 24 22 21 47 47 H 1.09004 * 109.46742 * 180.21819 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7240 1.2484 5 7 1.6109 -2.1291 1.2044 6 6 2.0333 -2.8472 2.4143 7 6 1.2651 -4.1662 2.5190 8 6 -0.2273 -3.8746 2.6916 9 6 -0.9972 -5.1971 2.7613 10 7 -0.4172 -6.0264 3.8265 11 6 -1.2079 -6.5401 4.8194 12 1 -2.1315 -6.0467 5.0840 13 6 -0.8225 -7.6950 5.4861 14 7 -0.0611 -8.5815 4.8803 15 14 -1.3843 -7.9913 7.2428 16 1 -0.3353 -7.5224 8.1836 17 1 -2.6431 -7.2441 7.4925 18 1 -1.6210 -9.4427 7.4487 19 6 1.0283 -6.2889 3.8095 20 6 1.7746 -4.9586 3.7249 21 6 2.1184 -2.7916 -0.0058 22 6 1.6065 -2.0470 -1.2416 23 1 0.5187 -2.1065 -1.2777 24 6 2.1961 -2.6831 -2.5021 25 8 2.0076 -0.6763 -1.1662 26 1 -0.3634 0.5122 0.8909 27 1 -0.3632 0.5156 -0.8891 28 1 -0.3633 -1.0276 -0.0020 29 1 1.6330 -0.2461 2.1390 30 1 3.1298 -0.6775 1.2761 31 1 1.8251 -2.2348 3.2917 32 1 3.1024 -3.0527 2.3602 33 1 1.4186 -4.7486 1.6106 34 1 -0.5843 -3.2900 1.8437 35 1 -0.3842 -3.3133 3.6128 36 1 -0.9157 -5.7181 1.8073 37 1 -2.0465 -5.0005 2.9817 38 1 0.2085 -9.3884 5.3462 39 1 1.3158 -6.8102 4.7226 40 1 1.2784 -6.9007 2.9427 41 1 2.8425 -5.1458 3.6125 42 1 1.5989 -4.3872 4.6364 43 1 3.2083 -2.7781 0.0018 44 1 1.7668 -3.8231 -0.0307 45 1 3.2838 -2.6248 -2.4638 46 1 1.8900 -3.7278 -2.5590 47 1 1.8342 -2.1501 -3.3813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363664655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:46 Heat of formation + Delta-G solvation = -31.019475 kcal Electronic energy + Delta-G solvation = -23812.147228 eV Core-core repulsion = 20608.968007 eV Total energy + Delta-G solvation = -3203.179220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13202 -37.86253 -35.68119 -33.52144 -33.05881 -30.97876 -30.12788 -29.61764 -26.99218 -26.98948 -24.66156 -23.13339 -22.54301 -21.94741 -20.58463 -19.51765 -18.95287 -16.79105 -16.52410 -16.32835 -15.43212 -15.04551 -14.73407 -14.58781 -14.09464 -13.83565 -13.61288 -13.45756 -13.04678 -12.94679 -12.57430 -12.49844 -12.19639 -12.14292 -11.98890 -11.78372 -11.65797 -11.31349 -11.22467 -11.10659 -10.96889 -10.67310 -10.44357 -10.37754 -10.14964 -10.05474 -9.81290 -9.60316 -9.43284 -9.27781 -8.37023 -8.28854 -6.66870 -5.77711 -3.09833 3.41043 3.49321 3.50679 3.59256 3.81416 4.55827 4.67170 4.75497 4.86211 4.94611 5.08541 5.20391 5.24871 5.31311 5.36016 5.41456 5.46344 5.47519 5.55526 5.63782 5.66846 5.73204 5.81656 5.82699 5.90859 5.93885 6.00880 6.01656 6.20634 6.24105 6.24903 6.44705 6.65176 6.69386 6.79025 6.89734 6.93912 6.99629 7.05904 7.13668 7.14679 7.37002 7.59496 7.87185 8.46709 9.24221 9.91465 10.48852 11.31009 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.003715 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.969909 B = 7534.928257 C = 7723.001680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.528 5.528 6 C 0.061 3.939 7 C -0.071 4.071 8 C -0.115 4.115 9 C 0.144 3.856 10 N -0.591 5.591 11 C -0.255 4.255 12 H 0.066 0.934 13 C 0.005 3.995 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.288 1.288 17 H -0.278 1.278 18 H -0.293 1.293 19 C 0.174 3.826 20 C -0.135 4.135 21 C 0.024 3.976 22 C 0.086 3.914 23 H 0.070 0.930 24 C -0.144 4.144 25 O -0.381 6.381 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.013 0.987 37 H 0.050 0.950 38 H 0.252 0.748 39 H 0.076 0.924 40 H 0.015 0.985 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.455 15.532 -10.956 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.033 3.967 3 H 0.118 0.882 4 C -0.105 4.105 5 N -0.253 5.253 6 C -0.066 4.066 7 C -0.090 4.090 8 C -0.154 4.154 9 C 0.018 3.982 10 N -0.314 5.314 11 C -0.384 4.384 12 H 0.083 0.917 13 C -0.194 4.194 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.216 1.216 17 H -0.204 1.204 18 H -0.220 1.220 19 C 0.048 3.952 20 C -0.175 4.175 21 C -0.105 4.105 22 C 0.029 3.971 23 H 0.088 0.912 24 C -0.202 4.202 25 O -0.301 6.301 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.087 15.442 -11.056 19.662 hybrid contribution 0.613 -0.357 1.296 1.477 sum 5.700 15.086 -9.760 18.850 Atomic orbital electron populations 1.22277 0.95461 1.03746 1.01774 1.22221 0.94473 0.95568 0.84394 0.88192 1.22776 0.98277 0.90232 0.99225 1.62169 1.59416 1.01271 1.02404 1.22300 0.96788 0.96124 0.91413 1.21014 0.95959 0.93462 0.98561 1.21891 0.94371 0.98597 1.00533 1.20931 0.95726 0.90307 0.91228 1.44076 1.02741 1.57991 1.26634 1.19163 1.05143 1.04526 1.09618 0.91670 1.24872 1.00496 0.94644 0.99432 1.70193 1.40355 1.08304 1.34797 0.86451 0.78386 0.76892 0.86277 1.21563 1.20351 1.21965 1.20558 0.82873 0.91110 1.00678 1.22123 0.98335 0.99953 0.97049 1.22847 0.97845 0.99557 0.90221 1.22166 0.99156 0.81498 0.94331 0.91169 1.21751 1.01629 1.00495 0.96326 1.88004 1.75690 1.23431 1.42954 0.91757 0.92650 0.90671 0.89794 0.94469 0.91037 0.95252 0.92139 0.92207 0.93007 0.96906 0.93134 0.93789 0.90569 0.96644 0.93664 0.92688 0.94399 0.89225 0.92079 0.90792 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.89 37.16 0.33 -1.40 16 2 C 0.09 0.94 3.92 -26.68 -0.10 0.83 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.02 0.25 5.04 -3.71 -0.02 0.24 16 5 N -0.53 -6.60 3.44 -234.31 -0.81 -7.40 16 6 C 0.06 0.84 4.37 -3.82 -0.02 0.82 16 7 C -0.07 -1.17 2.15 -90.58 -0.19 -1.37 16 8 C -0.11 -2.02 5.25 -26.61 -0.14 -2.16 16 9 C 0.14 3.09 6.52 -3.71 -0.02 3.07 16 10 N -0.59 -15.03 3.00 -172.58 -0.52 -15.55 16 11 C -0.26 -7.14 9.52 -15.07 -0.14 -7.28 16 12 H 0.07 1.81 7.95 -52.49 -0.42 1.39 16 13 C 0.00 0.13 4.63 -17.43 -0.08 0.05 16 14 N -0.89 -26.33 11.76 55.49 0.65 -25.68 16 15 Si 0.89 21.85 29.63 -169.99 -5.04 16.82 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 C 0.17 4.16 5.39 -3.93 -0.02 4.14 16 20 C -0.13 -2.55 5.34 -26.84 -0.14 -2.69 16 21 C 0.02 0.28 4.75 -3.71 -0.02 0.27 16 22 C 0.09 0.96 3.03 -26.68 -0.08 0.88 16 23 H 0.07 0.80 6.49 -51.93 -0.34 0.46 16 24 C -0.14 -1.33 9.57 37.16 0.36 -0.98 16 25 O -0.38 -4.57 10.28 -35.23 -0.36 -4.94 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.86 6.12 -51.93 -0.32 0.54 16 29 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 32 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.06 1.03 6.57 -51.93 -0.34 0.69 16 34 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 37 H 0.05 1.08 7.92 -51.93 -0.41 0.66 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.08 2.04 6.23 -51.93 -0.32 1.71 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.13 6.54 -51.93 -0.34 0.79 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -29.83 351.50 -9.84 -39.67 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.77 Total: -2.63 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.30 Total: -5.58 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.67 Total: -48.63 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.36 Total: -4.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.83 -9.84 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363664655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.650 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds