Wall clock time and date at job start Tue Mar 31 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.50726 * 2 1 4 4 C 1.53101 * 109.54263 * 239.89061 * 2 1 3 5 5 N 1.47018 * 109.25453 * 183.19579 * 4 2 1 6 6 C 1.46903 * 110.99484 * 182.39181 * 5 4 2 7 7 C 1.53003 * 109.47368 * 52.42771 * 6 5 4 8 8 H 1.09001 * 110.59007 * 305.73826 * 7 6 5 9 9 C 1.54934 * 110.80837 * 68.84082 * 7 6 5 10 10 C 1.54601 * 102.91859 * 155.91675 * 9 7 6 11 11 C 1.53990 * 105.13985 * 338.04578 * 10 9 7 12 12 N 1.47903 * 107.05949 * 358.77112 * 11 10 9 13 13 C 1.46907 * 110.99697 * 145.84272 * 12 11 10 14 14 C 1.50698 * 109.46764 * 65.82366 * 13 12 11 15 15 H 1.07999 * 120.00421 * 5.02204 * 14 13 12 16 16 C 1.37877 * 119.99572 * 185.01595 * 14 13 12 17 17 N 1.31509 * 120.00371 * 5.04144 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 185.03744 * 16 14 13 19 19 H 1.48504 * 109.46789 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46887 * 120.00138 * 18 16 14 21 21 H 1.48491 * 109.47328 * 240.00605 * 18 16 14 22 22 C 1.47011 * 110.75485 * 58.61952 * 5 4 2 23 23 C 1.53104 * 109.25244 * 301.37840 * 22 5 4 24 24 H 1.08995 * 109.50499 * 296.91247 * 23 22 5 25 25 C 1.53006 * 109.50278 * 176.78668 * 23 22 5 26 26 O 1.43011 * 109.25920 * 56.85372 * 23 22 5 27 27 H 1.09001 * 109.46792 * 294.94824 * 1 2 3 28 28 H 1.09001 * 109.46736 * 54.95035 * 1 2 3 29 29 H 1.08999 * 109.47018 * 174.94622 * 1 2 3 30 30 H 1.08993 * 109.50521 * 63.25768 * 4 2 1 31 31 H 1.08998 * 109.50159 * 303.12903 * 4 2 1 32 32 H 1.08998 * 109.47107 * 292.42794 * 6 5 4 33 33 H 1.08998 * 109.47347 * 172.42682 * 6 5 4 34 34 H 1.08996 * 110.72337 * 37.56443 * 9 7 6 35 35 H 1.08995 * 110.73045 * 274.27394 * 9 7 6 36 36 H 1.09002 * 110.31022 * 219.12462 * 10 9 7 37 37 H 1.08999 * 110.30666 * 96.96091 * 10 9 7 38 38 H 1.09001 * 109.91996 * 118.12746 * 11 10 9 39 39 H 1.09000 * 109.91384 * 239.42015 * 11 10 9 40 40 H 1.09004 * 109.46679 * 185.81921 * 13 12 11 41 41 H 1.08994 * 109.47023 * 305.82470 * 13 12 11 42 42 H 0.97002 * 120.00545 * 179.97438 * 17 16 14 43 43 H 1.08992 * 109.51195 * 61.31330 * 22 5 4 44 44 H 1.09004 * 109.50573 * 181.40777 * 22 5 4 45 45 H 1.09003 * 109.47250 * 60.00098 * 25 23 22 46 46 H 1.09001 * 109.47093 * 179.97438 * 25 23 22 47 47 H 1.09005 * 109.46840 * 300.00186 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0422 -0.7238 -1.2481 5 7 3.5103 -0.7874 -1.2035 6 6 4.0464 -1.4257 -2.4132 7 6 3.4747 -0.7327 -3.6517 8 1 2.3854 -0.7188 -3.6146 9 6 4.0357 0.7052 -3.7861 10 6 3.8900 0.9932 -5.2980 11 6 3.8184 -0.3923 -5.9663 12 7 3.9487 -1.3998 -4.8913 13 6 3.1443 -2.5928 -5.1876 14 6 3.7025 -3.2853 -6.4041 15 1 4.6144 -2.9272 -6.8586 16 6 3.0489 -4.3762 -6.9368 17 7 1.8883 -4.7520 -6.4455 18 14 3.8119 -5.3206 -8.3566 19 1 5.1109 -4.7006 -8.7220 20 1 4.0343 -6.7314 -7.9499 21 1 2.8976 -5.2806 -9.5259 22 6 3.9649 -1.4869 0.0069 23 6 3.4335 -0.7554 1.2424 24 1 3.8528 0.2500 1.2785 25 6 3.8359 -1.5233 2.5032 26 8 2.0076 -0.6758 1.1665 27 1 -0.3633 0.4335 0.9318 28 1 -0.3633 0.5902 -0.8413 29 1 -0.3633 -1.0237 -0.0905 30 1 1.7282 -0.1797 -2.1388 31 1 1.6347 -1.7344 -1.2756 32 1 3.7650 -2.4786 -2.4235 33 1 5.1330 -1.3400 -2.4180 34 1 5.0830 0.7402 -3.4860 35 1 3.4420 1.4073 -3.2008 36 1 4.7561 1.5451 -5.6632 37 1 2.9750 1.5535 -5.4899 38 1 2.8606 -0.5113 -6.4726 39 1 4.6350 -0.5030 -6.6798 40 1 3.1755 -3.2727 -4.3362 41 1 2.1129 -2.2972 -5.3791 42 1 1.4283 -5.5193 -6.8205 43 1 3.5883 -2.5097 -0.0006 44 1 5.0546 -1.5005 0.0318 45 1 4.9226 -1.5870 2.5585 46 1 3.4577 -1.0018 3.3824 47 1 3.4144 -2.5279 2.4667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374027883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:55 Heat of formation + Delta-G solvation = -42.910630 kcal Electronic energy + Delta-G solvation = -23630.775530 eV Core-core repulsion = 20427.080670 eV Total energy + Delta-G solvation = -3203.694860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.91606 -38.31480 -35.52109 -33.77218 -33.08820 -30.87428 -30.66958 -29.26976 -26.76383 -26.26397 -25.59074 -22.78524 -22.12900 -22.02377 -20.51227 -19.94208 -19.19045 -16.59430 -16.30990 -16.18714 -15.51669 -15.17803 -14.98316 -14.82329 -14.28078 -13.95139 -13.78996 -13.20073 -12.87982 -12.81132 -12.65839 -12.56201 -12.21941 -12.12578 -11.92129 -11.82376 -11.67948 -11.61649 -11.05241 -11.00739 -10.91927 -10.62002 -10.61714 -10.46104 -10.36358 -10.27425 -10.01250 -9.82998 -9.50487 -9.13864 -8.46566 -8.21917 -7.31819 -6.04991 -4.05833 3.29522 3.37064 3.42392 3.60177 3.85523 4.42222 4.69253 4.89631 4.93145 5.00322 5.10842 5.11869 5.19947 5.28114 5.32301 5.35911 5.40215 5.45130 5.51062 5.58372 5.63215 5.69947 5.76428 5.83270 5.85403 5.93084 5.96033 6.00075 6.06198 6.12746 6.19403 6.21063 6.36847 6.42707 6.60849 6.72024 6.74565 7.05430 7.10619 7.22886 7.24807 7.34463 7.77855 8.00031 8.17760 8.51163 9.03138 9.58779 11.05982 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.004180 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.015927 B = 6696.305342 C = 7149.678993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.092 3.908 3 H 0.064 0.936 4 C 0.017 3.983 5 N -0.534 5.534 6 C 0.074 3.926 7 C 0.062 3.938 8 H 0.045 0.955 9 C -0.103 4.103 10 C -0.136 4.136 11 C 0.054 3.946 12 N -0.512 5.512 13 C 0.185 3.815 14 C -0.507 4.507 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.024 3.976 23 C 0.092 3.908 24 H 0.064 0.936 25 C -0.144 4.144 26 O -0.383 6.383 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.023 0.977 41 H -0.004 1.004 42 H 0.260 0.740 43 H 0.042 0.958 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 11.055 13.948 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.035 3.965 3 H 0.082 0.918 4 C -0.111 4.111 5 N -0.259 5.259 6 C -0.053 4.053 7 C -0.047 4.047 8 H 0.063 0.937 9 C -0.141 4.141 10 C -0.175 4.175 11 C -0.074 4.074 12 N -0.237 5.237 13 C 0.060 3.940 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.105 4.105 23 C 0.034 3.966 24 H 0.082 0.918 25 C -0.201 4.201 26 O -0.303 6.303 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.014 0.986 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.727 11.122 14.108 18.047 hybrid contribution -0.724 -1.271 -1.246 1.921 sum 1.004 9.850 12.862 16.232 Atomic orbital electron populations 1.21754 0.92979 1.03028 1.02472 1.22130 0.94608 0.95429 0.84374 0.91827 1.22912 0.88536 1.00507 0.99125 1.62260 1.08524 1.52823 1.02302 1.21971 0.99998 0.96039 0.87318 1.22728 0.96801 0.93499 0.91697 0.93724 1.22343 1.01143 0.95515 0.95065 1.22503 1.00879 0.97874 0.96208 1.22575 1.00796 0.89307 0.94747 1.64672 1.53239 1.05612 1.00177 1.19886 0.90793 0.86707 0.96640 1.21178 1.09212 1.12601 1.11552 0.91850 1.24992 0.94713 0.97515 0.97342 1.69972 1.14373 1.26876 1.42618 0.86465 0.79380 0.79819 0.81923 1.19602 1.20986 1.21134 1.22793 1.00992 0.96342 0.90358 1.22099 0.81343 0.98871 0.94291 0.91784 1.21745 1.01317 1.00787 0.96281 1.87953 1.20882 1.78605 1.42856 0.91723 0.90909 0.91844 0.89145 0.93879 0.94255 0.90020 0.91274 0.92008 0.91901 0.92504 0.94014 0.91199 0.95855 0.98631 0.93000 0.93974 0.89782 0.90982 0.91779 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 37.16 0.36 -1.17 16 2 C 0.09 1.14 3.42 -26.68 -0.09 1.05 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.02 0.25 4.45 -3.71 -0.02 0.23 16 5 N -0.53 -7.68 4.70 -234.30 -1.10 -8.79 16 6 C 0.07 1.25 4.81 -3.82 -0.02 1.23 16 7 C 0.06 1.11 1.89 -65.79 -0.12 0.99 16 8 H 0.04 0.85 5.88 -51.93 -0.31 0.55 16 9 C -0.10 -1.56 6.38 -24.87 -0.16 -1.72 16 10 C -0.14 -2.11 6.93 -25.37 -0.18 -2.29 16 11 C 0.05 1.07 5.99 -2.76 -0.02 1.05 16 12 N -0.51 -11.10 4.98 -224.06 -1.12 -12.22 16 13 C 0.19 4.86 4.45 -4.97 -0.02 4.84 16 14 C -0.51 -14.35 8.69 -34.44 -0.30 -14.65 16 15 H 0.06 1.79 7.76 -52.49 -0.41 1.38 16 16 C 0.06 1.59 5.45 -17.82 -0.10 1.49 16 17 N -0.90 -26.86 13.28 55.43 0.74 -26.12 16 18 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.02 0.30 4.95 -3.71 -0.02 0.29 16 23 C 0.09 1.06 3.43 -26.67 -0.09 0.97 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 C -0.14 -1.33 9.57 37.16 0.36 -0.97 16 26 O -0.38 -5.11 10.11 -35.23 -0.36 -5.47 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 1.29 5.94 -51.93 -0.31 0.99 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.76 7.27 -51.93 -0.38 0.38 16 33 H 0.08 1.35 8.06 -51.93 -0.42 0.94 16 34 H 0.07 1.04 7.99 -51.93 -0.42 0.63 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.89 7.64 -51.93 -0.40 0.49 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.02 0.65 7.24 -51.93 -0.38 0.28 16 41 H 0.00 -0.12 7.92 -51.93 -0.41 -0.53 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -30.17 360.07 -10.74 -40.92 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.89 Total: -1.83 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.42 Total: -8.67 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -1.48 Total: -47.13 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: -0.36 Total: -5.47 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.17 -10.74 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374027883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.992 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds