Wall clock time and date at job start Tue Mar 31 2020 06:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.54142 * 2 1 4 4 C 1.53103 * 109.50276 * 239.90144 * 2 1 3 5 5 N 1.47017 * 109.25606 * 296.90920 * 4 2 1 6 6 C 1.46900 * 110.99765 * 177.61039 * 5 4 2 7 7 C 1.52998 * 109.47090 * 293.63552 * 6 5 4 8 8 H 1.08997 * 109.90842 * 65.35162 * 7 6 5 9 9 C 1.53994 * 109.91807 * 186.45491 * 7 6 5 10 10 C 1.54596 * 105.14079 * 120.57459 * 9 7 6 11 11 C 1.54940 * 102.92084 * 21.96247 * 10 9 7 12 12 N 1.47902 * 109.91903 * 304.04608 * 7 6 5 13 13 C 1.46894 * 111.00286 * 94.79999 * 12 7 6 14 14 C 1.50698 * 109.47339 * 170.00111 * 13 12 7 15 15 H 1.08000 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99852 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00316 * 0.02562 * 16 14 13 18 18 Si 1.86811 * 119.99772 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46885 * 89.99858 * 18 16 14 20 20 H 1.48495 * 109.46952 * 209.99784 * 18 16 14 21 21 H 1.48502 * 109.47109 * 330.00135 * 18 16 14 22 22 C 1.47014 * 110.75303 * 301.38548 * 5 4 2 23 23 C 1.53096 * 109.25675 * 58.61803 * 22 5 4 24 24 H 1.08994 * 109.50924 * 63.08237 * 23 22 5 25 25 C 1.52999 * 109.50505 * 183.21775 * 23 22 5 26 26 O 1.43010 * 109.51114 * 120.11911 * 2 1 3 27 27 H 1.08998 * 109.46965 * 299.88262 * 1 2 3 28 28 H 1.08994 * 109.47194 * 59.88451 * 1 2 3 29 29 H 1.09002 * 109.46832 * 179.88688 * 1 2 3 30 30 H 1.09006 * 109.50645 * 176.97499 * 4 2 1 31 31 H 1.08997 * 109.50861 * 56.84355 * 4 2 1 32 32 H 1.08999 * 109.47519 * 53.63686 * 6 5 4 33 33 H 1.09002 * 109.47237 * 173.63581 * 6 5 4 34 34 H 1.09005 * 110.31115 * 239.49315 * 9 7 6 35 35 H 1.09001 * 110.30748 * 1.56583 * 9 7 6 36 36 H 1.09001 * 110.72469 * 140.31585 * 10 9 7 37 37 H 1.08997 * 110.72849 * 263.60509 * 10 9 7 38 38 H 1.08999 * 110.67198 * 81.01925 * 11 10 9 39 39 H 1.09002 * 110.66951 * 204.15143 * 11 10 9 40 40 H 1.08998 * 109.47682 * 290.00608 * 13 12 7 41 41 H 1.09009 * 109.47028 * 50.00483 * 13 12 7 42 42 H 0.97006 * 120.00313 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.50706 * 298.68119 * 22 5 4 44 44 H 1.08995 * 109.54210 * 178.57064 * 22 5 4 45 45 H 1.09002 * 109.47066 * 179.78225 * 25 23 22 46 46 H 1.09003 * 109.47222 * 299.78133 * 25 23 22 47 47 H 1.08997 * 109.47586 * 59.78074 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0411 -0.7237 -1.2486 5 7 1.6109 -2.1289 -1.2048 6 6 2.0335 -2.8467 -2.4148 7 6 1.2903 -2.2833 -3.6277 8 1 1.5887 -1.2490 -3.7982 9 6 1.6022 -3.1316 -4.8745 10 6 0.2320 -3.6620 -5.3551 11 6 -0.7672 -2.6550 -4.7322 12 7 -0.1697 -2.3605 -3.4046 13 6 -0.6871 -1.0968 -2.8630 14 6 -2.1937 -1.1228 -2.8790 15 1 -2.7149 -1.9914 -3.2537 16 6 -2.9069 -0.0377 -2.4154 17 7 -2.2723 1.0201 -1.9597 18 14 -4.7746 -0.0702 -2.4346 19 1 -5.2731 -0.6310 -1.1531 20 1 -5.2920 1.3112 -2.6050 21 1 -5.2434 -0.9169 -3.5610 22 6 2.1186 -2.7916 0.0053 23 6 1.6066 -2.0471 1.2413 24 1 0.5189 -2.1066 1.2774 25 6 2.1962 -2.6834 2.5016 26 8 2.0076 -0.6764 1.1660 27 1 -0.3633 0.5120 0.8910 28 1 -0.3633 0.5156 -0.8889 29 1 -0.3633 -1.0277 -0.0020 30 1 3.1299 -0.6771 -1.2763 31 1 1.6330 -0.2457 -2.1391 32 1 3.1069 -2.7209 -2.5557 33 1 1.8029 -3.9067 -2.3076 34 1 2.0611 -2.5143 -5.6470 35 1 2.2599 -3.9606 -4.6132 36 1 0.1710 -3.6428 -6.4433 37 1 0.0529 -4.6679 -4.9754 38 1 -0.8279 -1.7496 -5.3361 39 1 -1.7514 -3.1097 -4.6188 40 1 -0.3368 -0.9700 -1.8387 41 1 -0.3315 -0.2670 -3.4740 42 1 -2.7741 1.7834 -1.6332 43 1 3.2085 -2.7780 -0.0023 44 1 1.7676 -3.8232 0.0306 45 1 1.8344 -2.1505 3.3809 46 1 1.8903 -3.7281 2.5584 47 1 3.2839 -2.6250 2.4634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374027888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:57 Heat of formation + Delta-G solvation = -27.831333 kcal Electronic energy + Delta-G solvation = -24909.477892 eV Core-core repulsion = 21706.436920 eV Total energy + Delta-G solvation = -3203.040972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.76488 -38.15391 -35.12040 -33.34783 -32.77925 -30.80647 -30.21909 -28.96254 -26.37506 -26.07416 -25.29058 -23.05062 -22.20169 -21.56916 -20.25500 -19.30133 -18.71266 -16.30842 -15.99128 -15.83962 -15.42308 -15.03700 -14.75740 -14.37003 -14.09308 -13.87518 -13.38658 -13.16911 -12.83962 -12.47232 -12.25464 -12.19079 -11.98971 -11.78485 -11.71443 -11.34023 -11.15988 -10.97312 -10.79612 -10.71774 -10.67598 -10.59011 -10.43751 -10.36757 -10.11384 -10.02255 -9.72906 -9.51220 -9.06635 -8.77074 -8.33320 -7.76328 -7.09656 -5.96174 -3.92842 3.34960 3.41421 3.44428 4.12693 4.22737 4.48509 4.95668 5.12672 5.22231 5.25366 5.34392 5.39808 5.42427 5.49626 5.52425 5.59217 5.67719 5.74380 5.80158 5.88683 5.93093 5.96231 6.01004 6.06844 6.16132 6.18746 6.24257 6.25592 6.36053 6.38672 6.44165 6.59635 6.75406 6.78325 6.83672 7.06589 7.38648 7.46144 7.48722 7.57199 7.63242 7.77413 7.94544 8.29556 8.42635 8.69193 9.13614 9.68809 11.13783 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.007989 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.456989 B = 3504.093538 C = 5134.834988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 H 0.094 0.906 4 C 0.025 3.975 5 N -0.509 5.509 6 C 0.079 3.921 7 C 0.065 3.935 8 H 0.040 0.960 9 C -0.124 4.124 10 C -0.126 4.126 11 C 0.049 3.951 12 N -0.493 5.493 13 C 0.160 3.840 14 C -0.504 4.504 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.029 3.971 23 C 0.086 3.914 24 H 0.073 0.927 25 C -0.141 4.141 26 O -0.388 6.388 27 H 0.037 0.963 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.022 0.978 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.075 0.925 40 H 0.090 0.910 41 H -0.025 1.025 42 H 0.259 0.741 43 H 0.030 0.970 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.028 -6.552 1.294 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.034 3.966 3 H 0.112 0.888 4 C -0.103 4.103 5 N -0.233 5.233 6 C -0.049 4.049 7 C -0.045 4.045 8 H 0.058 0.942 9 C -0.162 4.162 10 C -0.165 4.165 11 C -0.079 4.079 12 N -0.218 5.218 13 C 0.035 3.965 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.099 4.099 23 C 0.028 3.972 24 H 0.091 0.909 25 C -0.199 4.199 26 O -0.307 6.307 27 H 0.056 0.944 28 H 0.142 0.858 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.109 0.891 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.108 0.892 41 H -0.007 1.007 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.452 -6.683 1.917 11.733 hybrid contribution -0.134 0.702 -0.890 1.142 sum 9.318 -5.981 1.027 11.120 Atomic orbital electron populations 1.22715 0.92588 1.04192 1.04770 1.22337 0.96425 0.94643 0.83241 0.88774 1.22844 0.96778 0.90162 1.00495 1.62094 1.58821 1.01238 1.01141 1.22120 0.94738 0.98444 0.89610 1.22351 0.92586 0.97051 0.92497 0.94191 1.22388 0.97771 0.99117 0.96961 1.22530 0.95111 0.99810 0.99001 1.23000 0.97789 0.96380 0.90732 1.64774 0.99795 1.36875 1.20356 1.20634 0.94778 0.82772 0.98342 1.21278 0.91510 1.00962 1.40504 0.92446 1.24856 0.98044 0.95549 0.95737 1.69736 1.34940 1.05583 1.43319 0.86615 0.86270 0.76895 0.78269 1.20836 1.21521 1.20220 1.22745 0.97025 0.98893 0.91246 1.22077 0.99512 0.82063 0.93577 0.90916 1.21724 1.01210 1.00086 0.96868 1.87932 1.75899 1.22965 1.43953 0.94403 0.85796 0.91056 0.95631 0.89091 0.96022 0.90674 0.92367 0.91917 0.92345 0.91557 0.94735 0.90705 0.89228 1.00685 0.93104 0.95223 0.90231 0.91905 0.91333 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.89 7.41 37.16 0.28 -3.62 16 2 C 0.09 1.65 3.92 -26.68 -0.10 1.54 16 3 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 4 C 0.03 0.45 4.17 -3.71 -0.02 0.43 16 5 N -0.51 -8.86 2.77 -234.30 -0.65 -9.51 16 6 C 0.08 1.28 4.43 -3.83 -0.02 1.26 16 7 C 0.07 1.15 2.41 -66.64 -0.16 0.99 16 8 H 0.04 0.77 6.25 -51.93 -0.32 0.45 16 9 C -0.12 -1.82 6.57 -25.37 -0.17 -1.99 16 10 C -0.13 -1.94 7.06 -24.87 -0.18 -2.12 16 11 C 0.05 0.97 5.55 -1.89 -0.01 0.96 16 12 N -0.49 -10.46 4.89 -224.00 -1.10 -11.56 16 13 C 0.16 3.95 3.23 -4.98 -0.02 3.93 16 14 C -0.50 -13.70 8.56 -34.44 -0.29 -14.00 16 15 H 0.06 1.58 6.52 -52.49 -0.34 1.24 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -24.69 11.24 55.43 0.62 -24.06 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C 0.03 0.45 4.93 -3.71 -0.02 0.43 16 23 C 0.09 1.34 3.03 -26.68 -0.08 1.26 16 24 H 0.07 1.27 6.49 -51.93 -0.34 0.93 16 25 C -0.14 -1.72 9.57 37.16 0.36 -1.37 16 26 O -0.39 -6.84 10.28 -35.23 -0.36 -7.20 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.12 2.97 4.69 -51.93 -0.24 2.72 16 29 H 0.07 1.61 5.33 -51.93 -0.28 1.34 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.77 5.35 -51.93 -0.28 1.49 16 32 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.81 7.69 -51.93 -0.40 0.41 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.73 8.02 -51.93 -0.42 0.31 16 39 H 0.07 1.54 7.15 -51.93 -0.37 1.17 16 40 H 0.09 2.18 1.65 -51.93 -0.09 2.09 16 41 H -0.02 -0.67 7.82 -51.92 -0.41 -1.08 16 42 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -28.03 337.27 -10.05 -38.08 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.10 Total: 3.54 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.53 Total: -10.78 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -1.12 Total: -45.13 kcal Atomic # 8 Polarization: -6.84 SS G_CDS: -0.36 Total: -7.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.03 -10.05 -38.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374027888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.250 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds