Wall clock time and date at job start Tue Mar 31 2020 06:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.36804 * 2 1 4 4 C 1.54374 * 110.41156 * 122.35199 * 2 1 3 5 5 C 1.54451 * 104.97057 * 142.54828 * 4 2 1 6 6 H 1.08999 * 110.48421 * 241.15597 * 5 4 2 7 7 N 1.46901 * 110.23054 * 119.00591 * 5 4 2 8 8 C 1.47017 * 110.99964 * 187.78406 * 7 5 4 9 9 C 1.53095 * 109.25601 * 177.60868 * 8 7 5 10 10 O 1.43019 * 109.26074 * 56.84769 * 9 8 7 11 11 C 1.43010 * 113.73835 * 301.32924 * 10 9 8 12 12 C 1.47013 * 110.99960 * 64.14827 * 7 5 4 13 13 C 1.54375 * 105.07662 * 0.14858 * 5 4 2 14 14 N 1.48562 * 104.59817 * 336.04816 * 13 5 4 15 15 C 1.46894 * 111.00201 * 159.04323 * 14 13 5 16 16 C 1.52999 * 109.47430 * 54.57981 * 15 14 13 17 17 C 1.52998 * 109.47120 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47034 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00060 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00136 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99817 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47437 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46917 * 120.00317 * 22 20 18 25 25 H 1.48506 * 109.47403 * 239.99854 * 22 20 18 26 26 H 1.08994 * 109.47597 * 180.70653 * 1 2 3 27 27 H 1.09005 * 109.47202 * 60.69703 * 1 2 3 28 28 H 1.09000 * 109.46981 * 300.70167 * 1 2 3 29 29 H 1.09004 * 110.32445 * 261.52520 * 4 2 1 30 30 H 1.09006 * 110.32750 * 23.73022 * 4 2 1 31 31 H 1.08999 * 109.50500 * 297.54236 * 8 7 5 32 32 H 1.08996 * 109.50878 * 57.66913 * 8 7 5 33 33 H 1.08993 * 109.51153 * 296.90931 * 9 8 7 34 34 H 1.09006 * 109.53950 * 176.80251 * 9 8 7 35 35 H 1.09000 * 109.50531 * 298.73419 * 11 10 9 36 36 H 1.08998 * 109.54145 * 178.62526 * 11 10 9 37 37 H 1.09001 * 109.50640 * 302.32861 * 12 7 5 38 38 H 1.09005 * 109.50634 * 62.45844 * 12 7 5 39 39 H 1.08996 * 110.41219 * 217.26888 * 13 5 4 40 40 H 1.09007 * 110.51414 * 94.87968 * 13 5 4 41 41 H 1.09005 * 109.47050 * 174.58294 * 15 14 13 42 42 H 1.09000 * 109.47098 * 294.58093 * 15 14 13 43 43 H 1.08998 * 109.46880 * 300.00311 * 16 15 14 44 44 H 1.09000 * 109.46888 * 59.99983 * 16 15 14 45 45 H 1.08998 * 109.47275 * 299.99797 * 17 16 15 46 46 H 1.09000 * 109.47475 * 60.00071 * 17 16 15 47 47 H 0.97005 * 120.00112 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7742 1.2222 5 6 3.3177 -1.5197 0.7036 6 1 3.1878 -2.5973 0.8037 7 7 4.5123 -1.0804 1.4369 8 6 5.7334 -1.6382 0.8374 9 6 6.9546 -1.1086 1.5938 10 8 6.8315 -1.4402 2.9795 11 6 5.6537 -0.9124 3.5954 12 6 4.4193 -1.4400 2.8594 13 6 3.4290 -1.1291 -0.7858 14 7 2.0480 -0.7450 -1.1763 15 6 2.0567 0.1039 -2.3751 16 6 2.8197 -0.6045 -3.4962 17 6 2.8293 0.2800 -4.7445 18 6 3.5803 -0.4181 -5.8490 19 1 4.0084 -1.3947 -5.6775 20 6 3.7210 0.1901 -7.0784 21 7 3.2003 1.3795 -7.2870 22 14 4.6525 -0.6749 -8.4471 23 1 5.1370 -1.9918 -7.9609 24 1 3.7497 -0.8782 -9.6086 25 1 5.8109 0.1574 -8.8604 26 1 -0.3634 -1.0275 0.0127 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3633 0.5247 0.8836 29 1 2.3416 -0.0819 2.0186 30 1 1.3235 -1.4863 1.5776 31 1 5.7074 -2.7258 0.9041 32 1 5.7949 -1.3384 -0.2087 33 1 7.0105 -0.0258 1.4822 34 1 7.8591 -1.5633 1.1896 35 1 5.6717 0.1761 3.5421 36 1 5.6166 -1.2252 4.6389 37 1 3.5216 -0.9955 3.2892 38 1 4.3724 -2.5245 2.9583 39 1 3.7688 -1.9791 -1.3774 40 1 4.1077 -0.2851 -0.9096 41 1 1.0317 0.2912 -2.6951 42 1 2.5446 1.0512 -2.1459 43 1 3.8447 -0.7918 -3.1761 44 1 2.3319 -1.5519 -3.7254 45 1 1.8045 0.4676 -5.0648 46 1 3.3175 1.2271 -4.5151 47 1 3.2995 1.8076 -8.1518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375744993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:59 Heat of formation + Delta-G solvation = -46.358678 kcal Electronic energy + Delta-G solvation = -23091.470670 eV Core-core repulsion = 19887.626292 eV Total energy + Delta-G solvation = -3203.844378 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.21329 -38.72876 -35.77443 -34.10365 -32.37455 -31.52150 -30.71806 -29.86520 -26.76854 -26.26406 -25.26305 -23.83497 -22.64799 -21.27546 -20.48530 -19.92160 -19.39293 -17.15498 -16.30278 -16.26896 -15.62026 -15.47507 -15.27546 -14.95973 -14.68015 -14.41843 -14.22701 -13.99987 -13.57124 -12.90836 -12.60350 -12.44769 -12.25729 -12.07399 -11.98743 -11.87621 -11.60773 -11.32863 -11.16920 -11.13124 -10.86054 -10.76946 -10.71650 -10.66058 -10.48126 -10.36177 -9.87285 -9.65328 -9.31840 -9.02470 -8.58314 -8.33579 -8.20622 -5.98597 -4.00582 3.31686 3.39089 3.43338 3.44829 3.65672 4.28395 4.43714 4.47910 4.63921 4.70321 4.78416 4.91732 4.96813 5.04099 5.09207 5.28804 5.29453 5.37300 5.38342 5.44709 5.52424 5.55315 5.60673 5.69278 5.71422 5.75450 5.77950 5.87045 5.89433 5.97235 6.01743 6.14455 6.27851 6.37302 6.67331 6.73041 6.77622 6.83460 6.90337 7.06722 7.23839 7.39753 7.69755 7.84616 8.01861 8.45164 9.06745 9.63378 11.12890 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.003686 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.665630 B = 7594.228171 C = 8911.769074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.052 0.948 4 C -0.110 4.110 5 C 0.078 3.922 6 H 0.051 0.949 7 N -0.530 5.530 8 C 0.014 3.986 9 C 0.064 3.936 10 O -0.388 6.388 11 C 0.064 3.936 12 C 0.016 3.984 13 C 0.043 3.957 14 N -0.506 5.506 15 C 0.047 3.953 16 C -0.107 4.107 17 C 0.022 3.978 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.016 0.984 46 H 0.013 0.987 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -4.171 22.470 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.050 4.050 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.030 4.030 6 H 0.069 0.931 7 N -0.256 5.256 8 C -0.114 4.114 9 C -0.013 4.013 10 O -0.307 6.307 11 C -0.013 4.013 12 C -0.112 4.112 13 C -0.085 4.085 14 N -0.230 5.230 15 C -0.081 4.081 16 C -0.145 4.145 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.034 0.966 46 H 0.032 0.968 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.696 -4.100 22.260 22.645 hybrid contribution 0.703 -0.347 -0.897 1.191 sum 1.399 -4.447 21.363 21.866 Atomic orbital electron populations 1.21700 0.94068 1.02213 1.01313 1.22611 0.95899 0.96041 0.90442 0.93048 1.22473 0.95724 0.99058 0.97598 1.22470 0.89323 0.97364 0.93853 0.93071 1.62364 1.02148 1.59247 1.01887 1.22822 0.90334 0.97945 1.00301 1.22684 0.97337 1.00293 0.80980 1.87972 1.42623 1.76416 1.23640 1.22646 0.83829 0.98379 0.96435 1.22792 0.99735 0.99259 0.89389 1.23088 0.91503 1.01004 0.92913 1.65456 1.16974 1.37764 1.02842 1.22452 1.01252 0.94121 0.90231 1.21684 0.97878 0.99758 0.95173 1.19068 0.97156 0.94559 0.90767 1.21282 1.34224 1.03442 0.96630 0.92694 1.25029 0.95865 0.94951 0.98680 1.69977 1.45494 1.14613 1.23477 0.86554 0.79672 0.79737 0.82147 1.19745 1.21014 1.21042 0.92018 0.92443 0.92766 0.90676 0.91120 0.93861 0.88927 0.92164 0.88348 0.92309 0.88635 0.89500 0.94042 0.90126 0.92575 0.90935 0.95139 0.93573 0.92679 0.96590 0.96837 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.35 37.16 0.35 -1.20 16 2 C 0.06 0.75 2.88 -66.07 -0.19 0.56 16 3 H 0.05 0.70 7.82 -51.93 -0.41 0.29 16 4 C -0.11 -1.19 5.68 -25.25 -0.14 -1.33 16 5 C 0.08 0.92 2.80 -66.23 -0.19 0.73 16 6 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 7 N -0.53 -5.80 4.50 -224.56 -1.01 -6.81 16 8 C 0.01 0.15 5.37 -3.71 -0.02 0.13 16 9 C 0.06 0.63 7.01 37.21 0.26 0.89 16 10 O -0.39 -4.26 10.83 -35.23 -0.38 -4.64 16 11 C 0.06 0.56 7.01 37.21 0.26 0.82 16 12 C 0.02 0.15 5.41 -3.71 -0.02 0.13 16 13 C 0.04 0.61 3.45 -2.18 -0.01 0.60 16 14 N -0.51 -7.72 5.17 -222.15 -1.15 -8.86 16 15 C 0.05 0.84 4.90 -3.83 -0.02 0.82 16 16 C -0.11 -2.25 4.87 -26.73 -0.13 -2.38 16 17 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 18 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 19 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 22 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.06 0.70 7.69 -51.93 -0.40 0.30 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.75 6.76 -51.93 -0.35 0.40 16 30 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.03 6.65 -51.93 -0.35 0.68 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.69 6.56 -51.93 -0.34 0.35 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 40 H 0.06 0.86 7.38 -51.93 -0.38 0.47 16 41 H 0.07 1.30 7.73 -51.93 -0.40 0.90 16 42 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 43 H 0.05 0.95 6.84 -51.93 -0.36 0.59 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -30.84 357.45 -10.64 -41.48 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.81 Total: -3.49 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -0.40 Total: -13.42 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -1.42 Total: -42.14 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.38 Total: -4.64 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.84 -10.64 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.879 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds