Wall clock time and date at job start Tue Mar 31 2020 06:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.36804 * 2 1 4 4 C 1.54374 * 110.41156 * 122.35199 * 2 1 3 5 5 C 1.54451 * 104.97057 * 142.54828 * 4 2 1 6 6 H 1.08999 * 110.48421 * 241.15597 * 5 4 2 7 7 N 1.46901 * 110.23054 * 119.00591 * 5 4 2 8 8 C 1.47017 * 110.99964 * 187.78406 * 7 5 4 9 9 C 1.53095 * 109.25601 * 177.60868 * 8 7 5 10 10 O 1.43019 * 109.26074 * 56.84769 * 9 8 7 11 11 C 1.43010 * 113.73835 * 301.32924 * 10 9 8 12 12 C 1.47013 * 110.99960 * 64.14827 * 7 5 4 13 13 C 1.54375 * 105.07662 * 0.14858 * 5 4 2 14 14 N 1.48562 * 104.59817 * 336.04816 * 13 5 4 15 15 C 1.46894 * 111.00201 * 159.04323 * 14 13 5 16 16 C 1.52999 * 109.47430 * 54.57981 * 15 14 13 17 17 C 1.52998 * 109.47120 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47034 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00060 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00136 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99817 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47437 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46917 * 120.00317 * 22 20 18 25 25 H 1.48506 * 109.47403 * 239.99854 * 22 20 18 26 26 H 1.08994 * 109.47597 * 180.70653 * 1 2 3 27 27 H 1.09005 * 109.47202 * 60.69703 * 1 2 3 28 28 H 1.09000 * 109.46981 * 300.70167 * 1 2 3 29 29 H 1.09004 * 110.32445 * 261.52520 * 4 2 1 30 30 H 1.09006 * 110.32750 * 23.73022 * 4 2 1 31 31 H 1.08999 * 109.50500 * 297.54236 * 8 7 5 32 32 H 1.08996 * 109.50878 * 57.66913 * 8 7 5 33 33 H 1.08993 * 109.51153 * 296.90931 * 9 8 7 34 34 H 1.09006 * 109.53950 * 176.80251 * 9 8 7 35 35 H 1.09000 * 109.50531 * 298.73419 * 11 10 9 36 36 H 1.08998 * 109.54145 * 178.62526 * 11 10 9 37 37 H 1.09001 * 109.50640 * 302.32861 * 12 7 5 38 38 H 1.09005 * 109.50634 * 62.45844 * 12 7 5 39 39 H 1.08996 * 110.41219 * 217.26888 * 13 5 4 40 40 H 1.09007 * 110.51414 * 94.87968 * 13 5 4 41 41 H 1.09005 * 109.47050 * 174.58294 * 15 14 13 42 42 H 1.09000 * 109.47098 * 294.58093 * 15 14 13 43 43 H 1.08998 * 109.46880 * 300.00311 * 16 15 14 44 44 H 1.09000 * 109.46888 * 59.99983 * 16 15 14 45 45 H 1.08998 * 109.47275 * 299.99797 * 17 16 15 46 46 H 1.09000 * 109.47475 * 60.00071 * 17 16 15 47 47 H 0.97005 * 120.00112 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7742 1.2222 5 6 3.3177 -1.5197 0.7036 6 1 3.1878 -2.5973 0.8037 7 7 4.5123 -1.0804 1.4369 8 6 5.7334 -1.6382 0.8374 9 6 6.9546 -1.1086 1.5938 10 8 6.8315 -1.4402 2.9795 11 6 5.6537 -0.9124 3.5954 12 6 4.4193 -1.4400 2.8594 13 6 3.4290 -1.1291 -0.7858 14 7 2.0480 -0.7450 -1.1763 15 6 2.0567 0.1039 -2.3751 16 6 2.8197 -0.6045 -3.4962 17 6 2.8293 0.2800 -4.7445 18 6 3.5803 -0.4181 -5.8490 19 1 4.0084 -1.3947 -5.6775 20 6 3.7210 0.1901 -7.0784 21 7 3.2003 1.3795 -7.2870 22 14 4.6525 -0.6749 -8.4471 23 1 5.1370 -1.9918 -7.9609 24 1 3.7497 -0.8782 -9.6086 25 1 5.8109 0.1574 -8.8604 26 1 -0.3634 -1.0275 0.0127 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3633 0.5247 0.8836 29 1 2.3416 -0.0819 2.0186 30 1 1.3235 -1.4863 1.5776 31 1 5.7074 -2.7258 0.9041 32 1 5.7949 -1.3384 -0.2087 33 1 7.0105 -0.0258 1.4822 34 1 7.8591 -1.5633 1.1896 35 1 5.6717 0.1761 3.5421 36 1 5.6166 -1.2252 4.6389 37 1 3.5216 -0.9955 3.2892 38 1 4.3724 -2.5245 2.9583 39 1 3.7688 -1.9791 -1.3774 40 1 4.1077 -0.2851 -0.9096 41 1 1.0317 0.2912 -2.6951 42 1 2.5446 1.0512 -2.1459 43 1 3.8447 -0.7918 -3.1761 44 1 2.3319 -1.5519 -3.7254 45 1 1.8045 0.4676 -5.0648 46 1 3.3175 1.2271 -4.5151 47 1 3.2995 1.8076 -8.1518 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375744993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:58 Heat of formation + Delta-G solvation = -67.522691 kcal Electronic energy + Delta-G solvation = -23092.388410 eV Core-core repulsion = 19887.626292 eV Total energy + Delta-G solvation = -3204.762119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13511 -39.71178 -36.87065 -35.80699 -34.13024 -32.39431 -31.73994 -31.30565 -28.14028 -27.33871 -26.57729 -24.64624 -24.35343 -22.50705 -21.53906 -21.12791 -20.62041 -18.55531 -17.93204 -17.07819 -16.76986 -16.54569 -16.39265 -16.08662 -15.93247 -15.81700 -15.42825 -14.92748 -14.70464 -14.38461 -14.06216 -13.73670 -13.57629 -13.27321 -13.10580 -12.89809 -12.82610 -12.70107 -12.57541 -12.38722 -12.33385 -12.12901 -11.91858 -11.78120 -11.69055 -11.47595 -11.45847 -11.32839 -11.06495 -10.66099 -10.57389 -9.46877 -9.42802 -8.21632 -6.32837 1.38863 1.39213 1.52779 2.39596 2.57596 2.93066 3.11450 3.15890 3.47876 3.64883 3.93830 4.01262 4.05832 4.15662 4.18385 4.22064 4.25904 4.32131 4.35027 4.48493 4.51840 4.59999 4.65946 4.69893 4.74896 4.76612 4.80579 4.86689 4.89825 4.93536 4.97437 4.99311 5.04073 5.15572 5.17633 5.19391 5.40213 5.49349 5.70023 5.81416 5.83188 5.91376 6.04657 6.10896 6.16504 6.25395 6.83711 7.36474 8.90581 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017167 B = 0.003686 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.665630 B = 7594.228171 C = 8911.769074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 H 0.043 0.957 4 C -0.100 4.100 5 C 0.086 3.914 6 H 0.052 0.948 7 N -0.538 5.538 8 C 0.015 3.985 9 C 0.066 3.934 10 O -0.404 6.404 11 C 0.061 3.939 12 C 0.018 3.982 13 C 0.044 3.956 14 N -0.511 5.511 15 C 0.061 3.939 16 C -0.090 4.090 17 C 0.027 3.973 18 C -0.542 4.542 19 H 0.058 0.942 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.023 0.977 43 H 0.048 0.952 44 H 0.051 0.949 45 H -0.008 1.008 46 H -0.011 1.011 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -5.175 23.901 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 H 0.061 0.939 4 C -0.138 4.138 5 C -0.022 4.022 6 H 0.070 0.930 7 N -0.264 5.264 8 C -0.113 4.113 9 C -0.011 4.011 10 O -0.323 6.323 11 C -0.015 4.015 12 C -0.110 4.110 13 C -0.085 4.085 14 N -0.235 5.235 15 C -0.067 4.067 16 C -0.128 4.128 17 C -0.011 4.011 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.186 1.186 24 H -0.203 1.203 25 H -0.202 1.202 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.010 0.990 46 H 0.007 0.993 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.895 -5.111 23.715 24.276 hybrid contribution 0.628 0.000 -1.313 1.456 sum 1.523 -5.111 22.402 23.028 Atomic orbital electron populations 1.21686 0.92836 1.02506 1.01839 1.22737 0.96881 0.95615 0.90105 0.93937 1.22443 0.95345 0.99237 0.96782 1.22343 0.90271 0.97457 0.92159 0.93029 1.62375 1.01747 1.59397 1.02896 1.22795 0.90831 0.97734 0.99959 1.22708 0.97436 1.00201 0.80755 1.87952 1.43681 1.76759 1.23911 1.22824 0.82902 0.98440 0.97379 1.22862 1.00709 0.99292 0.88108 1.23050 0.90544 0.99995 0.94873 1.65439 1.17762 1.37427 1.02921 1.22152 1.00248 0.93735 0.90612 1.21416 0.98600 0.98632 0.94141 1.18956 0.95031 0.94331 0.92740 1.21693 1.34717 1.03839 0.97736 0.92359 1.25993 0.96706 0.95656 1.01502 1.70105 1.46644 1.16179 1.24430 0.85389 0.78269 0.78837 0.78498 1.18630 1.20265 1.20232 0.91839 0.93834 0.90322 0.89265 0.89528 0.94170 0.89947 0.92401 0.87139 0.92244 0.86416 0.87835 0.94254 0.91155 0.94005 0.91271 0.95895 0.93317 0.93028 0.98993 0.99264 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.35 71.98 0.67 -2.08 16 2 C 0.05 1.33 2.88 45.06 0.13 1.46 16 3 H 0.04 1.12 7.82 -2.39 -0.02 1.10 16 4 C -0.10 -1.91 5.68 31.55 0.18 -1.73 16 5 C 0.09 1.90 2.80 45.87 0.13 2.03 16 6 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 7 N -0.54 -11.00 4.50 -864.36 -3.89 -14.88 16 8 C 0.02 0.31 5.37 86.31 0.46 0.77 16 9 C 0.07 1.24 7.01 72.01 0.50 1.75 16 10 O -0.40 -8.26 10.83 -148.98 -1.61 -9.87 16 11 C 0.06 0.94 7.01 72.02 0.50 1.44 16 12 C 0.02 0.29 5.41 86.32 0.47 0.75 16 13 C 0.04 1.23 3.45 86.45 0.30 1.53 16 14 N -0.51 -15.41 5.17 -856.73 -4.43 -19.84 16 15 C 0.06 2.21 4.90 86.30 0.42 2.64 16 16 C -0.09 -3.88 4.87 30.59 0.15 -3.74 16 17 C 0.03 1.47 4.97 29.85 0.15 1.62 16 18 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 21 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 22 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 27 H 0.04 1.03 7.69 -2.38 -0.02 1.01 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.49 6.76 -2.38 -0.02 1.48 16 30 H 0.09 1.43 7.84 -2.38 -0.02 1.41 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 1.85 6.65 -2.39 -0.02 1.83 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.30 6.56 -2.39 -0.02 1.29 16 38 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.07 2.09 7.67 -2.39 -0.02 2.07 16 40 H 0.04 1.30 7.38 -2.38 -0.02 1.28 16 41 H 0.07 2.55 7.73 -2.38 -0.02 2.53 16 42 H 0.02 0.86 7.88 -2.39 -0.02 0.84 16 43 H 0.05 2.05 6.84 -2.39 -0.02 2.04 16 44 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 45 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.26 15.22 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -66.44 357.45 -1.95 -68.39 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.90 Total: 11.21 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.76 Total: -24.56 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -8.03 Total: -92.11 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.61 Total: -9.87 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.44 -1.95 -68.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.872 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds