Wall clock time and date at job start Tue Mar 31 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 110.41625 * 2 1 4 4 C 1.54901 * 110.37493 * 237.68796 * 2 1 3 5 5 C 1.55142 * 101.65250 * 204.09809 * 4 2 1 6 6 H 1.09001 * 110.70510 * 277.27154 * 5 4 2 7 7 N 1.46903 * 110.70575 * 154.03644 * 5 4 2 8 8 C 1.47009 * 110.99895 * 183.95048 * 7 5 4 9 9 C 1.53103 * 109.25776 * 177.60782 * 8 7 5 10 10 O 1.43014 * 109.25998 * 56.84589 * 9 8 7 11 11 C 1.43022 * 113.73833 * 301.33355 * 10 9 8 12 12 C 1.47020 * 110.99943 * 60.31160 * 7 5 4 13 13 C 1.54313 * 103.01986 * 35.65500 * 5 4 2 14 14 N 1.47453 * 107.23181 * 337.71497 * 13 5 4 15 15 C 1.46898 * 110.99782 * 236.74471 * 14 13 5 16 16 C 1.53005 * 109.47106 * 290.12061 * 15 14 13 17 17 C 1.53005 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46801 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00233 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00136 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47603 * 89.99567 * 22 20 18 24 24 H 1.48502 * 109.46923 * 210.00112 * 22 20 18 25 25 H 1.48499 * 109.46781 * 329.99646 * 22 20 18 26 26 H 1.09002 * 109.46802 * 180.86085 * 1 2 3 27 27 H 1.08997 * 109.47047 * 300.85830 * 1 2 3 28 28 H 1.08999 * 109.46659 * 60.86116 * 1 2 3 29 29 H 1.09007 * 110.99190 * 86.00530 * 4 2 1 30 30 H 1.09008 * 110.99237 * 322.19193 * 4 2 1 31 31 H 1.08999 * 109.50733 * 297.54138 * 8 7 5 32 32 H 1.08996 * 109.50975 * 57.67174 * 8 7 5 33 33 H 1.08999 * 109.50473 * 296.91498 * 9 8 7 34 34 H 1.08996 * 109.50755 * 176.78453 * 9 8 7 35 35 H 1.08996 * 109.50416 * 298.73089 * 11 10 9 36 36 H 1.08997 * 109.53961 * 178.62801 * 11 10 9 37 37 H 1.08995 * 109.50668 * 302.33072 * 12 7 5 38 38 H 1.09000 * 109.50263 * 62.45815 * 12 7 5 39 39 H 1.09003 * 109.89244 * 97.11883 * 13 5 4 40 40 H 1.08994 * 109.89161 * 218.31359 * 13 5 4 41 41 H 1.09000 * 109.47684 * 50.12483 * 15 14 13 42 42 H 1.09005 * 109.46778 * 170.12737 * 15 14 13 43 43 H 1.08996 * 109.47628 * 300.00921 * 16 15 14 44 44 H 1.09005 * 109.46750 * 60.00659 * 16 15 14 45 45 H 1.08997 * 109.47261 * 300.00953 * 17 16 15 46 46 H 1.09005 * 109.46676 * 60.00769 * 17 16 15 47 47 H 0.96996 * 120.00193 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0694 -0.7762 -1.2272 5 6 3.4787 -1.1994 -0.7358 6 1 4.1942 -0.3886 -0.8728 7 7 3.9280 -2.4135 -1.4301 8 6 5.2211 -2.8737 -0.9033 9 6 5.6221 -4.1706 -1.6113 10 8 5.6620 -3.9446 -3.0228 11 6 4.4188 -3.4960 -3.5695 12 6 4.0057 -2.1923 -2.8814 13 6 3.2537 -1.4806 0.7648 14 7 2.0448 -0.7408 1.1713 15 6 2.3358 0.1718 2.2851 16 6 2.6069 -0.6409 3.5528 17 6 2.9107 0.3096 4.7127 18 6 3.1783 -0.4910 5.9611 19 1 3.1364 -1.5697 5.9303 20 6 3.4767 0.1538 7.1427 21 7 3.5282 1.4675 7.1802 22 14 3.8092 -0.8383 8.6901 23 1 5.2595 -1.1446 8.7798 24 1 3.3945 -0.0530 9.8803 25 1 3.0377 -2.1062 8.6403 26 1 -0.3633 -1.0276 0.0154 27 1 -0.3633 0.5271 0.8822 28 1 -0.3632 0.5004 -0.8976 29 1 2.1389 -0.1270 -2.1002 30 1 1.4516 -1.6488 -1.4397 31 1 5.9793 -2.1115 -1.0829 32 1 5.1338 -3.0557 0.1678 33 1 4.8916 -4.9481 -1.3877 34 1 6.6066 -4.4849 -1.2650 35 1 3.6534 -4.2539 -3.4029 36 1 4.5325 -3.3227 -4.6396 37 1 3.0312 -1.8769 -3.2542 38 1 4.7445 -1.4192 -3.0927 39 1 3.1057 -2.5488 0.9238 40 1 4.1119 -1.1333 1.3399 41 1 3.2131 0.7718 2.0436 42 1 1.4810 0.8278 2.4500 43 1 1.7297 -1.2410 3.7944 44 1 3.4617 -1.2970 3.3879 45 1 3.7881 0.9093 4.4708 46 1 2.0562 0.9659 4.8778 47 1 3.7377 1.9211 8.0115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375744994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:01 Heat of formation + Delta-G solvation = -48.097497 kcal Electronic energy + Delta-G solvation = -22968.733454 eV Core-core repulsion = 19764.813675 eV Total energy + Delta-G solvation = -3203.919779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21007 -38.77926 -35.76274 -34.09885 -32.35584 -31.52724 -30.76336 -29.85256 -26.77265 -26.31515 -25.22192 -23.90437 -22.60934 -21.28959 -20.54012 -19.86757 -19.46221 -17.05707 -16.52265 -16.31266 -15.99307 -15.31822 -15.17046 -14.92279 -14.61658 -14.41993 -14.19076 -13.94255 -13.45388 -12.97039 -12.64787 -12.53145 -12.33782 -12.09437 -12.02937 -11.86773 -11.63766 -11.44332 -11.16850 -11.03641 -10.91716 -10.77956 -10.70609 -10.60235 -10.49335 -10.42597 -9.90855 -9.63004 -9.29365 -9.02996 -8.64886 -8.32294 -8.04433 -5.97636 -3.99537 3.33464 3.39542 3.42736 3.43674 3.64069 4.12871 4.36438 4.48573 4.65322 4.68297 4.78480 4.88748 4.93690 5.00432 5.07944 5.19942 5.27497 5.34641 5.38171 5.39475 5.50021 5.53032 5.59491 5.62759 5.69586 5.70159 5.74144 5.88313 5.90611 5.98424 6.07534 6.14429 6.30585 6.39943 6.69823 6.73179 6.82318 6.83227 6.87746 7.14407 7.30809 7.44798 7.71198 7.86082 8.03083 8.46746 9.07794 9.64388 11.13862 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.003422 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.577981 B = 8181.213134 C = 9349.308398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.067 3.933 3 H 0.051 0.949 4 C -0.114 4.114 5 C 0.061 3.939 6 H 0.046 0.954 7 N -0.523 5.523 8 C 0.014 3.986 9 C 0.065 3.935 10 O -0.388 6.388 11 C 0.064 3.936 12 C 0.017 3.983 13 C 0.054 3.946 14 N -0.521 5.521 15 C 0.052 3.948 16 C -0.102 4.102 17 C 0.022 3.978 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 -6.714 -22.536 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.042 4.042 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.049 4.049 6 H 0.064 0.936 7 N -0.249 5.249 8 C -0.114 4.114 9 C -0.012 4.012 10 O -0.307 6.307 11 C -0.013 4.013 12 C -0.111 4.111 13 C -0.074 4.074 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.140 4.140 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.880 -7.307 -22.253 23.438 hybrid contribution 1.261 0.986 0.765 1.774 sum 0.380 -6.321 -21.488 22.401 Atomic orbital electron populations 1.21665 0.93879 1.02383 1.01075 1.22514 0.96319 0.95836 0.89535 0.93098 1.22807 0.95057 1.00294 0.97050 1.22962 0.96317 0.90168 0.95414 0.93564 1.62302 1.27753 1.31729 1.03068 1.22830 0.90054 0.97530 1.01006 1.22679 1.02190 0.95879 0.80492 1.87975 1.33329 1.87194 1.22177 1.22651 0.86446 0.94638 0.97537 1.22787 1.01764 0.97849 0.88746 1.22842 0.92200 1.00564 0.91775 1.63623 1.28087 1.26638 1.06176 1.22481 0.99256 0.94308 0.91533 1.21621 1.00331 0.98717 0.93354 1.19075 0.96601 0.94345 0.91553 1.21257 1.47020 0.93139 0.94135 0.92673 1.25030 0.95617 0.94870 0.99024 1.69968 1.49493 1.07314 1.26916 0.86601 0.78479 0.80162 0.82820 1.20725 1.21252 1.19819 0.91914 0.92415 0.92906 0.91561 0.89545 0.94003 0.88957 0.92073 0.88382 0.92201 0.88633 0.89470 0.94181 0.89677 0.92494 0.95423 0.91284 0.92585 0.93670 0.96971 0.96651 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.59 37.16 0.36 -1.15 16 2 C 0.07 0.84 3.01 -66.19 -0.20 0.64 16 3 H 0.05 0.66 7.81 -51.93 -0.41 0.25 16 4 C -0.11 -1.21 4.79 -24.59 -0.12 -1.33 16 5 C 0.06 0.70 2.63 -65.89 -0.17 0.53 16 6 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 7 N -0.52 -5.59 4.55 -224.15 -1.02 -6.61 16 8 C 0.01 0.14 5.45 -3.71 -0.02 0.12 16 9 C 0.06 0.60 7.01 37.21 0.26 0.87 16 10 O -0.39 -4.14 10.83 -35.23 -0.38 -4.52 16 11 C 0.06 0.55 7.01 37.21 0.26 0.81 16 12 C 0.02 0.15 5.45 -3.71 -0.02 0.13 16 13 C 0.05 0.76 4.76 -2.83 -0.01 0.75 16 14 N -0.52 -7.92 4.81 -223.38 -1.07 -8.99 16 15 C 0.05 0.92 4.54 -3.82 -0.02 0.90 16 16 C -0.10 -2.17 5.18 -26.73 -0.14 -2.31 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 22 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.60 8.03 -51.93 -0.42 0.19 16 30 H 0.09 0.94 8.06 -51.92 -0.42 0.53 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.96 6.98 -51.93 -0.36 0.60 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.69 7.00 -51.93 -0.36 0.33 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 1.23 7.73 -51.93 -0.40 0.83 16 40 H 0.06 0.86 6.91 -51.93 -0.36 0.50 16 41 H 0.03 0.50 7.96 -51.93 -0.41 0.08 16 42 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.95 7.14 -51.93 -0.37 0.58 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -30.95 360.88 -10.66 -41.61 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.97 Total: -3.94 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -0.37 Total: -13.32 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -1.36 Total: -42.18 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.38 Total: -4.52 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.95 -10.66 -41.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.484 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds