Wall clock time and date at job start Tue Mar 31 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 110.41625 * 2 1 4 4 C 1.54901 * 110.37493 * 237.68796 * 2 1 3 5 5 C 1.55142 * 101.65250 * 204.09809 * 4 2 1 6 6 H 1.09001 * 110.70510 * 277.27154 * 5 4 2 7 7 N 1.46903 * 110.70575 * 154.03644 * 5 4 2 8 8 C 1.47009 * 110.99895 * 183.95048 * 7 5 4 9 9 C 1.53103 * 109.25776 * 177.60782 * 8 7 5 10 10 O 1.43014 * 109.25998 * 56.84589 * 9 8 7 11 11 C 1.43022 * 113.73833 * 301.33355 * 10 9 8 12 12 C 1.47020 * 110.99943 * 60.31160 * 7 5 4 13 13 C 1.54313 * 103.01986 * 35.65500 * 5 4 2 14 14 N 1.47453 * 107.23181 * 337.71497 * 13 5 4 15 15 C 1.46898 * 110.99782 * 236.74471 * 14 13 5 16 16 C 1.53005 * 109.47106 * 290.12061 * 15 14 13 17 17 C 1.53005 * 109.47055 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46801 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00233 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00136 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47603 * 89.99567 * 22 20 18 24 24 H 1.48502 * 109.46923 * 210.00112 * 22 20 18 25 25 H 1.48499 * 109.46781 * 329.99646 * 22 20 18 26 26 H 1.09002 * 109.46802 * 180.86085 * 1 2 3 27 27 H 1.08997 * 109.47047 * 300.85830 * 1 2 3 28 28 H 1.08999 * 109.46659 * 60.86116 * 1 2 3 29 29 H 1.09007 * 110.99190 * 86.00530 * 4 2 1 30 30 H 1.09008 * 110.99237 * 322.19193 * 4 2 1 31 31 H 1.08999 * 109.50733 * 297.54138 * 8 7 5 32 32 H 1.08996 * 109.50975 * 57.67174 * 8 7 5 33 33 H 1.08999 * 109.50473 * 296.91498 * 9 8 7 34 34 H 1.08996 * 109.50755 * 176.78453 * 9 8 7 35 35 H 1.08996 * 109.50416 * 298.73089 * 11 10 9 36 36 H 1.08997 * 109.53961 * 178.62801 * 11 10 9 37 37 H 1.08995 * 109.50668 * 302.33072 * 12 7 5 38 38 H 1.09000 * 109.50263 * 62.45815 * 12 7 5 39 39 H 1.09003 * 109.89244 * 97.11883 * 13 5 4 40 40 H 1.08994 * 109.89161 * 218.31359 * 13 5 4 41 41 H 1.09000 * 109.47684 * 50.12483 * 15 14 13 42 42 H 1.09005 * 109.46778 * 170.12737 * 15 14 13 43 43 H 1.08996 * 109.47628 * 300.00921 * 16 15 14 44 44 H 1.09005 * 109.46750 * 60.00659 * 16 15 14 45 45 H 1.08997 * 109.47261 * 300.00953 * 17 16 15 46 46 H 1.09005 * 109.46676 * 60.00769 * 17 16 15 47 47 H 0.96996 * 120.00193 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0694 -0.7762 -1.2272 5 6 3.4787 -1.1994 -0.7358 6 1 4.1942 -0.3886 -0.8728 7 7 3.9280 -2.4135 -1.4301 8 6 5.2211 -2.8737 -0.9033 9 6 5.6221 -4.1706 -1.6113 10 8 5.6620 -3.9446 -3.0228 11 6 4.4188 -3.4960 -3.5695 12 6 4.0057 -2.1923 -2.8814 13 6 3.2537 -1.4806 0.7648 14 7 2.0448 -0.7408 1.1713 15 6 2.3358 0.1718 2.2851 16 6 2.6069 -0.6409 3.5528 17 6 2.9107 0.3096 4.7127 18 6 3.1783 -0.4910 5.9611 19 1 3.1364 -1.5697 5.9303 20 6 3.4767 0.1538 7.1427 21 7 3.5282 1.4675 7.1802 22 14 3.8092 -0.8383 8.6901 23 1 5.2595 -1.1446 8.7798 24 1 3.3945 -0.0530 9.8803 25 1 3.0377 -2.1062 8.6403 26 1 -0.3633 -1.0276 0.0154 27 1 -0.3633 0.5271 0.8822 28 1 -0.3632 0.5004 -0.8976 29 1 2.1389 -0.1270 -2.1002 30 1 1.4516 -1.6488 -1.4397 31 1 5.9793 -2.1115 -1.0829 32 1 5.1338 -3.0557 0.1678 33 1 4.8916 -4.9481 -1.3877 34 1 6.6066 -4.4849 -1.2650 35 1 3.6534 -4.2539 -3.4029 36 1 4.5325 -3.3227 -4.6396 37 1 3.0312 -1.8769 -3.2542 38 1 4.7445 -1.4192 -3.0927 39 1 3.1057 -2.5488 0.9238 40 1 4.1119 -1.1333 1.3399 41 1 3.2131 0.7718 2.0436 42 1 1.4810 0.8278 2.4500 43 1 1.7297 -1.2410 3.7944 44 1 3.4617 -1.2970 3.3879 45 1 3.7881 0.9093 4.4708 46 1 2.0562 0.9659 4.8778 47 1 3.7377 1.9211 8.0115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375744994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:01 Heat of formation + Delta-G solvation = -69.032967 kcal Electronic energy + Delta-G solvation = -22969.641284 eV Core-core repulsion = 19764.813675 eV Total energy + Delta-G solvation = -3204.827609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.11636 -39.73806 -36.83355 -35.81689 -34.11344 -32.38245 -31.79915 -31.25261 -28.14898 -27.37773 -26.52487 -24.69040 -24.34135 -22.44051 -21.57957 -21.11969 -20.66725 -18.52016 -17.91525 -17.30788 -17.03838 -16.53863 -16.26324 -15.95215 -15.87405 -15.53588 -15.47908 -15.03129 -14.52508 -14.43201 -14.14278 -13.70460 -13.55987 -13.32169 -13.15531 -13.04435 -12.79850 -12.63379 -12.55115 -12.43217 -12.35631 -12.14825 -11.94598 -11.84367 -11.59674 -11.47575 -11.45984 -11.35683 -11.05843 -10.67133 -10.56569 -9.50726 -9.25938 -8.21372 -6.32560 1.39007 1.40585 1.52103 2.39998 2.59300 2.94358 3.00395 3.11597 3.42899 3.70269 3.93173 3.99343 4.01741 4.14282 4.17253 4.23148 4.25799 4.28459 4.37881 4.40487 4.48803 4.60562 4.68778 4.71489 4.72785 4.80441 4.81716 4.84965 4.91871 4.93558 4.95358 5.00863 5.05803 5.11725 5.20778 5.23082 5.43552 5.50854 5.72014 5.84029 5.89976 5.95791 6.08437 6.13225 6.17010 6.27290 6.83950 7.36729 8.90622 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.003422 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.577981 B = 8181.213134 C = 9349.308398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.061 3.939 3 H 0.049 0.951 4 C -0.101 4.101 5 C 0.068 3.932 6 H 0.040 0.960 7 N -0.528 5.528 8 C 0.014 3.986 9 C 0.067 3.933 10 O -0.406 6.406 11 C 0.062 3.938 12 C 0.018 3.982 13 C 0.056 3.944 14 N -0.529 5.529 15 C 0.066 3.934 16 C -0.086 4.086 17 C 0.027 3.973 18 C -0.543 4.543 19 H 0.058 0.942 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.263 1.263 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.022 0.978 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.045 0.955 45 H -0.012 1.012 46 H -0.008 1.008 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 -7.837 -23.814 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 H 0.067 0.933 4 C -0.139 4.139 5 C -0.041 4.041 6 H 0.058 0.942 7 N -0.253 5.253 8 C -0.114 4.114 9 C -0.010 4.010 10 O -0.324 6.324 11 C -0.015 4.015 12 C -0.110 4.110 13 C -0.072 4.072 14 N -0.253 5.253 15 C -0.062 4.062 16 C -0.124 4.124 17 C -0.011 4.011 18 C -0.581 4.581 19 H 0.076 0.924 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.187 1.187 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.007 0.993 46 H 0.010 0.990 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.200 -8.440 -23.555 25.051 hybrid contribution 1.355 1.356 1.134 2.227 sum 0.155 -7.085 -22.421 23.515 Atomic orbital electron populations 1.21643 0.92832 1.02344 1.01720 1.22663 0.97108 0.95750 0.89166 0.93278 1.22750 0.93848 1.00473 0.96797 1.22814 0.97016 0.90446 0.93855 0.94168 1.62316 1.27856 1.31022 1.04111 1.22829 0.89818 0.97913 1.00867 1.22719 1.03006 0.95206 0.80079 1.87954 1.34580 1.87327 1.22589 1.22818 0.85805 0.94283 0.98550 1.22863 1.02526 0.98128 0.87494 1.22777 0.91083 0.99846 0.93529 1.63577 1.28592 1.26384 1.06779 1.22165 0.98906 0.93952 0.91204 1.21353 0.99934 0.97777 0.93308 1.18961 0.94487 0.94487 0.93114 1.21678 1.47395 0.93586 0.95420 0.92368 1.25994 0.95075 0.96020 1.02767 1.70097 1.50102 1.09127 1.28097 0.85438 0.78755 0.78714 0.78106 1.19689 1.20591 1.18745 0.92178 0.93821 0.90311 0.89130 0.89221 0.94822 0.89588 0.91848 0.87144 0.91871 0.86543 0.87859 0.94711 0.90242 0.94179 0.95939 0.91501 0.93095 0.93635 0.99323 0.98989 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.59 71.98 0.69 -2.00 16 2 C 0.06 1.45 3.01 45.39 0.14 1.58 16 3 H 0.05 1.20 7.81 -2.38 -0.02 1.18 16 4 C -0.10 -1.89 4.79 31.98 0.15 -1.74 16 5 C 0.07 1.50 2.63 46.09 0.12 1.62 16 6 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 7 N -0.53 -10.52 4.55 -863.09 -3.93 -14.45 16 8 C 0.01 0.28 5.45 86.32 0.47 0.75 16 9 C 0.07 1.17 7.01 72.02 0.50 1.68 16 10 O -0.41 -8.01 10.83 -148.98 -1.61 -9.63 16 11 C 0.06 0.92 7.01 72.01 0.50 1.42 16 12 C 0.02 0.28 5.45 86.31 0.47 0.75 16 13 C 0.06 1.55 4.76 86.64 0.41 1.97 16 14 N -0.53 -15.90 4.81 -860.63 -4.14 -20.04 16 15 C 0.07 2.38 4.54 86.31 0.39 2.77 16 16 C -0.09 -3.73 5.18 30.60 0.16 -3.57 16 17 C 0.03 1.48 4.97 29.85 0.15 1.63 16 18 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 20 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 21 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 22 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.32 8.03 -2.38 -0.02 1.30 16 30 H 0.09 1.69 8.06 -2.38 -0.02 1.67 16 31 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 1.80 6.98 -2.39 -0.02 1.78 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.30 7.00 -2.39 -0.02 1.29 16 38 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 2.30 7.73 -2.39 -0.02 2.28 16 40 H 0.04 1.24 6.91 -2.39 -0.02 1.22 16 41 H 0.02 0.83 7.96 -2.39 -0.02 0.81 16 42 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 43 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.04 1.95 7.14 -2.38 -0.02 1.94 16 45 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 47 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -66.74 360.88 -1.62 -68.36 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.89 Total: 10.59 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.86 Total: -24.35 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -7.78 Total: -92.03 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.61 Total: -9.63 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.74 -1.62 -68.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds