Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 110.41758 * 2 1 4 4 C 1.54906 * 110.37456 * 122.30812 * 2 1 3 5 5 C 1.55142 * 101.64998 * 155.89994 * 4 2 1 6 6 H 1.09002 * 110.85220 * 82.80208 * 5 4 2 7 7 N 1.46900 * 110.70435 * 205.96389 * 5 4 2 8 8 C 1.47009 * 111.00127 * 298.69033 * 7 5 4 9 9 C 1.53100 * 109.25806 * 177.60817 * 8 7 5 10 10 O 1.43016 * 109.25999 * 56.85049 * 9 8 7 11 11 C 1.43024 * 113.73701 * 301.33006 * 10 9 8 12 12 C 1.47017 * 110.99956 * 175.05491 * 7 5 4 13 13 C 1.54319 * 103.02055 * 324.34899 * 5 4 2 14 14 N 1.47445 * 107.23272 * 22.28397 * 13 5 4 15 15 C 1.46896 * 110.99888 * 123.25751 * 14 13 5 16 16 C 1.52997 * 109.47114 * 69.87222 * 15 14 13 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 H 1.09000 * 109.47030 * 182.31661 * 1 2 3 27 27 H 1.09008 * 109.46913 * 302.31316 * 1 2 3 28 28 H 1.08992 * 109.47250 * 62.31525 * 1 2 3 29 29 H 1.09003 * 110.99054 * 37.81281 * 4 2 1 30 30 H 1.08999 * 110.99797 * 273.99032 * 4 2 1 31 31 H 1.08996 * 109.50660 * 297.53852 * 8 7 5 32 32 H 1.08993 * 109.51022 * 57.67548 * 8 7 5 33 33 H 1.09000 * 109.50734 * 296.91681 * 9 8 7 34 34 H 1.09001 * 109.51119 * 176.77991 * 9 8 7 35 35 H 1.08998 * 109.50471 * 298.73719 * 11 10 9 36 36 H 1.08997 * 109.50637 * 178.60777 * 11 10 9 37 37 H 1.09003 * 109.50877 * 302.32979 * 12 7 5 38 38 H 1.08998 * 109.50658 * 62.45801 * 12 7 5 39 39 H 1.08996 * 109.88582 * 262.87541 * 13 5 4 40 40 H 1.09004 * 109.88528 * 141.69155 * 13 5 4 41 41 H 1.09001 * 109.47271 * 309.87491 * 15 14 13 42 42 H 1.09004 * 109.47041 * 189.87338 * 15 14 13 43 43 H 1.09001 * 109.46832 * 59.99999 * 16 15 14 44 44 H 1.09001 * 109.47502 * 299.99521 * 16 15 14 45 45 H 1.08998 * 109.46509 * 60.00429 * 17 16 15 46 46 H 1.08993 * 109.46955 * 299.99989 * 17 16 15 47 47 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0693 -0.7761 1.2273 5 6 3.4786 -1.1994 0.7358 6 1 4.1965 -0.3907 0.8729 7 7 3.9279 -2.4135 1.4302 8 6 4.0284 -2.1852 2.8789 9 6 4.4407 -3.4886 3.5681 10 8 5.6721 -3.9503 3.0062 11 6 5.6100 -4.1835 1.5964 12 6 5.2095 -2.8871 0.8874 13 6 3.2536 -1.4806 -0.7648 14 7 2.0447 -0.7408 -1.1713 15 6 2.3357 0.1717 -2.2851 16 6 2.6069 -0.6410 -3.5527 17 6 2.9094 0.3095 -4.7129 18 6 3.1772 -0.4910 -5.9613 19 1 3.1354 -1.5698 -5.9304 20 6 3.4745 0.1538 -7.1432 21 7 3.5249 1.4674 -7.1810 22 14 3.8057 -0.8385 -8.6908 23 1 4.0994 0.0840 -9.8169 24 1 2.6108 -1.6568 -9.0194 25 1 4.9708 -1.7315 -8.4664 26 1 -0.3633 -1.0268 0.0415 27 1 -0.3633 0.5494 0.8686 28 1 -0.3633 0.4774 -0.9099 29 1 1.4516 -1.6487 1.4398 30 1 2.1389 -0.1270 2.1002 31 1 4.7765 -1.4172 3.0754 32 1 3.0620 -1.8599 3.2640 33 1 3.6668 -4.2411 3.4166 34 1 4.5721 -3.3104 4.6354 35 1 4.8700 -4.9561 1.3877 36 1 6.5869 -4.5078 1.2378 37 1 5.1053 -3.0741 -0.1814 38 1 5.9764 -2.1303 1.0520 39 1 3.1057 -2.5488 -0.9236 40 1 4.1119 -1.1333 -1.3399 41 1 3.2130 0.7717 -2.0435 42 1 1.4810 0.8278 -2.4501 43 1 1.7295 -1.2410 -3.7942 44 1 3.4616 -1.2971 -3.3878 45 1 3.7866 0.9097 -4.4715 46 1 2.0545 0.9651 -4.8777 47 1 3.3525 1.9826 -6.3774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375744995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -51.982481 kcal Electronic energy + Delta-G solvation = -23006.168109 eV Core-core repulsion = 19802.079865 eV Total energy + Delta-G solvation = -3204.088245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25386 -38.83066 -35.82391 -34.34677 -32.48478 -31.55436 -30.79851 -29.76472 -26.74725 -26.21982 -25.02212 -23.93509 -22.60974 -21.38936 -20.62550 -20.05335 -19.57084 -17.09882 -16.83153 -16.35423 -16.15195 -15.35894 -15.20141 -14.96089 -14.67492 -14.28576 -14.04334 -13.72771 -13.56536 -13.12229 -12.76805 -12.67872 -12.49223 -12.28143 -12.03462 -11.82098 -11.66706 -11.45377 -11.32247 -11.08148 -10.94884 -10.75945 -10.73229 -10.62267 -10.49517 -10.10525 -9.93758 -9.76894 -9.67249 -8.68500 -8.50522 -8.29436 -8.11799 -6.33086 -4.01443 3.39187 3.45791 3.48041 3.61424 3.66637 4.06018 4.31759 4.57176 4.61829 4.64422 4.74499 4.86031 4.89591 4.97085 5.04049 5.14665 5.23463 5.30732 5.36276 5.44107 5.44568 5.49690 5.54929 5.58050 5.61979 5.63428 5.70497 5.82374 5.85114 5.89492 6.01688 6.08640 6.20133 6.32444 6.59164 6.65389 6.68762 6.78728 6.85113 6.99133 7.21177 7.33931 7.47100 7.59456 8.26983 8.50427 8.92390 9.70811 11.07601 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.003438 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.553290 B = 8143.164994 C = 9314.073438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.067 3.933 3 H 0.051 0.949 4 C -0.113 4.113 5 C 0.061 3.939 6 H 0.046 0.954 7 N -0.523 5.523 8 C 0.017 3.983 9 C 0.064 3.936 10 O -0.388 6.388 11 C 0.065 3.935 12 C 0.014 3.986 13 C 0.054 3.946 14 N -0.520 5.520 15 C 0.051 3.949 16 C -0.095 4.095 17 C 0.009 3.991 18 C -0.599 4.599 19 H 0.048 0.952 20 C 0.013 3.987 21 N -0.915 5.915 22 Si 1.069 2.931 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.027 0.973 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.003 0.997 46 H 0.006 0.994 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -7.184 22.840 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.042 4.042 3 H 0.069 0.931 4 C -0.151 4.151 5 C -0.048 4.048 6 H 0.064 0.936 7 N -0.249 5.249 8 C -0.111 4.111 9 C -0.013 4.013 10 O -0.306 6.306 11 C -0.012 4.012 12 C -0.114 4.114 13 C -0.074 4.074 14 N -0.245 5.245 15 C -0.076 4.076 16 C -0.133 4.133 17 C -0.029 4.029 18 C -0.637 4.637 19 H 0.067 0.933 20 C -0.190 4.190 21 N -0.552 5.552 22 Si 0.897 3.103 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.215 1.215 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.587 -7.789 21.073 22.474 hybrid contribution 0.651 1.270 1.824 2.316 sum 0.064 -6.519 22.897 23.807 Atomic orbital electron populations 1.21665 0.93821 1.02288 1.01223 1.22521 0.96353 0.95814 0.89521 0.93117 1.22802 0.95031 1.00309 0.97007 1.22959 0.96331 0.90226 0.95316 0.93575 1.62292 1.28415 1.31304 1.02861 1.22786 1.01693 0.97882 0.88776 1.22655 0.86754 0.94500 0.97360 1.87978 1.33784 1.86724 1.22163 1.22679 1.02199 0.95811 0.80543 1.22835 0.90203 0.97516 1.00887 1.22848 0.92113 1.00583 0.91870 1.63602 1.28129 1.26562 1.06178 1.22483 0.99175 0.94338 0.91642 1.21484 1.00530 0.98469 0.92843 1.19201 0.95475 0.94950 0.93241 1.22061 1.52002 0.94270 0.95410 0.93331 1.25862 0.94215 0.97068 1.01903 1.70784 1.46365 1.05730 1.32292 0.83551 0.76478 0.74810 0.75464 1.20807 1.21402 1.21482 0.91940 0.92844 0.92392 0.89483 0.91498 0.94170 0.89478 0.92183 0.88603 0.92058 0.88352 0.88979 0.93997 0.89615 0.92560 0.95493 0.91337 0.92414 0.93471 0.97888 0.97568 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.59 37.16 0.36 -1.15 16 2 C 0.07 0.83 3.01 -66.19 -0.20 0.63 16 3 H 0.05 0.65 7.81 -51.92 -0.41 0.24 16 4 C -0.11 -1.20 4.84 -24.59 -0.12 -1.32 16 5 C 0.06 0.71 2.63 -65.89 -0.17 0.53 16 6 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 7 N -0.52 -5.58 4.55 -224.16 -1.02 -6.60 16 8 C 0.02 0.15 5.46 -3.71 -0.02 0.13 16 9 C 0.06 0.55 7.01 37.21 0.26 0.81 16 10 O -0.39 -4.13 10.83 -35.23 -0.38 -4.51 16 11 C 0.06 0.60 7.01 37.21 0.26 0.87 16 12 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 13 C 0.05 0.76 4.74 -2.83 -0.01 0.74 16 14 N -0.52 -7.92 4.81 -223.38 -1.07 -8.99 16 15 C 0.05 0.91 4.54 -3.83 -0.02 0.89 16 16 C -0.10 -2.04 5.18 -26.73 -0.14 -2.18 16 17 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 18 C -0.60 -17.55 9.11 -34.44 -0.31 -17.86 16 19 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 20 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 21 N -0.92 -28.63 13.65 55.43 0.76 -27.87 16 22 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.07 0.60 8.02 -51.93 -0.42 0.19 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.68 7.04 -51.93 -0.37 0.32 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.96 6.91 -51.93 -0.36 0.61 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 1.25 7.67 -51.93 -0.40 0.85 16 40 H 0.06 0.85 6.91 -51.93 -0.36 0.49 16 41 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 42 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.05 1.01 7.14 -51.93 -0.37 0.64 16 45 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 46 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 47 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -31.84 359.48 -10.64 -42.48 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -8.90 Total: -3.23 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.35 Total: -17.39 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -1.34 Total: -43.46 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.38 Total: -4.51 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.84 -10.64 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.502 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds