Wall clock time and date at job start Tue Mar 31 2020 06:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09011 * 110.41758 * 2 1 4 4 C 1.54906 * 110.37456 * 122.30812 * 2 1 3 5 5 C 1.55142 * 101.64998 * 155.89994 * 4 2 1 6 6 H 1.09002 * 110.85220 * 82.80208 * 5 4 2 7 7 N 1.46900 * 110.70435 * 205.96389 * 5 4 2 8 8 C 1.47009 * 111.00127 * 298.69033 * 7 5 4 9 9 C 1.53100 * 109.25806 * 177.60817 * 8 7 5 10 10 O 1.43016 * 109.25999 * 56.85049 * 9 8 7 11 11 C 1.43024 * 113.73701 * 301.33006 * 10 9 8 12 12 C 1.47017 * 110.99956 * 175.05491 * 7 5 4 13 13 C 1.54319 * 103.02055 * 324.34899 * 5 4 2 14 14 N 1.47445 * 107.23272 * 22.28397 * 13 5 4 15 15 C 1.46896 * 110.99888 * 123.25751 * 14 13 5 16 16 C 1.52997 * 109.47114 * 69.87222 * 15 14 13 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 H 1.09000 * 109.47030 * 182.31661 * 1 2 3 27 27 H 1.09008 * 109.46913 * 302.31316 * 1 2 3 28 28 H 1.08992 * 109.47250 * 62.31525 * 1 2 3 29 29 H 1.09003 * 110.99054 * 37.81281 * 4 2 1 30 30 H 1.08999 * 110.99797 * 273.99032 * 4 2 1 31 31 H 1.08996 * 109.50660 * 297.53852 * 8 7 5 32 32 H 1.08993 * 109.51022 * 57.67548 * 8 7 5 33 33 H 1.09000 * 109.50734 * 296.91681 * 9 8 7 34 34 H 1.09001 * 109.51119 * 176.77991 * 9 8 7 35 35 H 1.08998 * 109.50471 * 298.73719 * 11 10 9 36 36 H 1.08997 * 109.50637 * 178.60777 * 11 10 9 37 37 H 1.09003 * 109.50877 * 302.32979 * 12 7 5 38 38 H 1.08998 * 109.50658 * 62.45801 * 12 7 5 39 39 H 1.08996 * 109.88582 * 262.87541 * 13 5 4 40 40 H 1.09004 * 109.88528 * 141.69155 * 13 5 4 41 41 H 1.09001 * 109.47271 * 309.87491 * 15 14 13 42 42 H 1.09004 * 109.47041 * 189.87338 * 15 14 13 43 43 H 1.09001 * 109.46832 * 59.99999 * 16 15 14 44 44 H 1.09001 * 109.47502 * 299.99521 * 16 15 14 45 45 H 1.08998 * 109.46509 * 60.00429 * 17 16 15 46 46 H 1.08993 * 109.46955 * 299.99989 * 17 16 15 47 47 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 6 2.0693 -0.7761 1.2273 5 6 3.4786 -1.1994 0.7358 6 1 4.1965 -0.3907 0.8729 7 7 3.9279 -2.4135 1.4302 8 6 4.0284 -2.1852 2.8789 9 6 4.4407 -3.4886 3.5681 10 8 5.6721 -3.9503 3.0062 11 6 5.6100 -4.1835 1.5964 12 6 5.2095 -2.8871 0.8874 13 6 3.2536 -1.4806 -0.7648 14 7 2.0447 -0.7408 -1.1713 15 6 2.3357 0.1717 -2.2851 16 6 2.6069 -0.6410 -3.5527 17 6 2.9094 0.3095 -4.7129 18 6 3.1772 -0.4910 -5.9613 19 1 3.1354 -1.5698 -5.9304 20 6 3.4745 0.1538 -7.1432 21 7 3.5249 1.4674 -7.1810 22 14 3.8057 -0.8385 -8.6908 23 1 4.0994 0.0840 -9.8169 24 1 2.6108 -1.6568 -9.0194 25 1 4.9708 -1.7315 -8.4664 26 1 -0.3633 -1.0268 0.0415 27 1 -0.3633 0.5494 0.8686 28 1 -0.3633 0.4774 -0.9099 29 1 1.4516 -1.6487 1.4398 30 1 2.1389 -0.1270 2.1002 31 1 4.7765 -1.4172 3.0754 32 1 3.0620 -1.8599 3.2640 33 1 3.6668 -4.2411 3.4166 34 1 4.5721 -3.3104 4.6354 35 1 4.8700 -4.9561 1.3877 36 1 6.5869 -4.5078 1.2378 37 1 5.1053 -3.0741 -0.1814 38 1 5.9764 -2.1303 1.0520 39 1 3.1057 -2.5488 -0.9236 40 1 4.1119 -1.1333 -1.3399 41 1 3.2130 0.7717 -2.0435 42 1 1.4810 0.8278 -2.4501 43 1 1.7295 -1.2410 -3.7942 44 1 3.4616 -1.2971 -3.3878 45 1 3.7866 0.9097 -4.4715 46 1 2.0545 0.9651 -4.8777 47 1 3.3525 1.9826 -6.3774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375744995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:03 Heat of formation + Delta-G solvation = -73.729239 kcal Electronic energy + Delta-G solvation = -23007.111119 eV Core-core repulsion = 19802.079865 eV Total energy + Delta-G solvation = -3205.031255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16416 -39.78744 -36.97001 -36.07298 -34.17903 -32.39575 -31.81219 -31.19114 -27.91712 -27.37713 -26.45393 -24.71921 -24.47619 -22.61580 -21.68036 -21.23118 -20.71768 -18.96026 -17.96053 -17.35264 -17.05914 -16.39817 -16.00196 -15.91639 -15.67949 -15.66008 -15.54946 -15.30705 -14.93130 -14.43797 -14.15875 -13.94453 -13.51659 -13.37266 -13.18675 -13.07917 -12.80688 -12.68665 -12.51055 -12.38446 -12.20885 -12.01887 -11.97121 -11.90240 -11.70956 -11.57859 -11.54108 -11.48848 -10.70222 -10.67481 -10.56464 -9.54595 -9.32747 -8.71770 -6.42034 1.51139 1.60002 1.79617 2.54084 2.56345 2.90395 2.94720 3.13326 3.37793 3.64808 3.90110 3.94931 3.97228 4.04352 4.13421 4.17388 4.19738 4.24157 4.29852 4.35563 4.42923 4.55371 4.57550 4.64320 4.69489 4.74964 4.77467 4.78294 4.80798 4.84589 4.89728 4.95580 4.97733 5.01369 5.03199 5.17306 5.38043 5.40163 5.48906 5.86276 5.91839 5.95758 6.01477 6.10143 6.14725 6.16281 6.55686 7.40165 8.69161 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.003438 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.553290 B = 8143.164994 C = 9314.073438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.061 3.939 3 H 0.050 0.950 4 C -0.100 4.100 5 C 0.069 3.931 6 H 0.041 0.959 7 N -0.528 5.528 8 C 0.018 3.982 9 C 0.062 3.938 10 O -0.405 6.405 11 C 0.067 3.933 12 C 0.014 3.986 13 C 0.056 3.944 14 N -0.529 5.529 15 C 0.066 3.934 16 C -0.080 4.080 17 C 0.011 3.989 18 C -0.620 4.620 19 H 0.049 0.951 20 C -0.040 4.040 21 N -0.938 5.938 22 Si 1.119 2.881 23 H -0.282 1.282 24 H -0.268 1.268 25 H -0.268 1.268 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.023 0.977 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.045 0.955 45 H -0.014 1.014 46 H -0.011 1.011 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 -8.319 24.310 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.047 4.047 3 H 0.068 0.932 4 C -0.138 4.138 5 C -0.041 4.041 6 H 0.058 0.942 7 N -0.253 5.253 8 C -0.110 4.110 9 C -0.015 4.015 10 O -0.324 6.324 11 C -0.010 4.010 12 C -0.114 4.114 13 C -0.073 4.073 14 N -0.253 5.253 15 C -0.062 4.062 16 C -0.118 4.118 17 C -0.027 4.027 18 C -0.658 4.658 19 H 0.068 0.932 20 C -0.237 4.237 21 N -0.575 5.575 22 Si 0.939 3.061 23 H -0.207 1.207 24 H -0.193 1.193 25 H -0.193 1.193 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.004 0.996 46 H 0.007 0.993 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.970 -8.931 22.587 24.308 hybrid contribution 0.758 1.631 1.415 2.288 sum -0.212 -7.300 24.002 25.088 Atomic orbital electron populations 1.21645 0.92775 1.02430 1.01691 1.22673 0.97136 0.95755 0.89112 0.93221 1.22748 0.93791 1.00494 0.96775 1.22813 0.97055 0.90508 0.93714 0.94152 1.62311 1.28497 1.30610 1.03902 1.22864 1.02456 0.98166 0.87518 1.22825 0.86136 0.94145 0.98352 1.87958 1.35040 1.86866 1.22558 1.22717 1.02999 0.95132 0.80148 1.22831 0.89977 0.97910 1.00725 1.22782 0.90985 0.99842 0.93656 1.63559 1.28620 1.26342 1.06810 1.22162 0.98934 0.93953 0.91180 1.21238 0.99961 0.97573 0.93002 1.19134 0.93900 0.95147 0.94474 1.22501 1.51832 0.94683 0.96761 0.93233 1.27508 0.93221 0.97262 1.05728 1.70921 1.48126 1.06748 1.31734 0.82931 0.77805 0.73885 0.71484 1.20719 1.19300 1.19325 0.92113 0.90252 0.93883 0.89178 0.89019 0.94701 0.87831 0.91843 0.86503 0.91826 0.87131 0.89670 0.94829 0.90238 0.94307 0.95884 0.91420 0.93126 0.93648 0.99619 0.99275 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.59 71.98 0.69 -1.97 16 2 C 0.06 1.43 3.01 45.39 0.14 1.57 16 3 H 0.05 1.19 7.81 -2.38 -0.02 1.18 16 4 C -0.10 -1.86 4.84 31.98 0.15 -1.71 16 5 C 0.07 1.50 2.63 46.10 0.12 1.62 16 6 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 7 N -0.53 -10.48 4.55 -863.09 -3.93 -14.40 16 8 C 0.02 0.28 5.46 86.32 0.47 0.75 16 9 C 0.06 0.91 7.01 72.02 0.50 1.41 16 10 O -0.41 -7.98 10.83 -148.98 -1.61 -9.59 16 11 C 0.07 1.18 7.01 72.01 0.50 1.68 16 12 C 0.01 0.28 5.44 86.31 0.47 0.75 16 13 C 0.06 1.55 4.74 86.65 0.41 1.96 16 14 N -0.53 -15.85 4.81 -860.65 -4.14 -19.99 16 15 C 0.07 2.37 4.54 86.30 0.39 2.76 16 16 C -0.08 -3.49 5.18 30.60 0.16 -3.33 16 17 C 0.01 0.60 4.28 29.85 0.13 0.73 16 18 C -0.62 -36.85 9.11 25.60 0.23 -36.62 16 19 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 20 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 21 N -0.94 -59.72 13.65 21.45 0.29 -59.43 16 22 Si 1.12 51.35 29.90 68.60 2.05 53.40 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 27 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 30 H 0.09 1.31 8.02 -2.39 -0.02 1.29 16 31 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 1.28 7.04 -2.39 -0.02 1.27 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.79 6.91 -2.39 -0.02 1.78 16 38 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 2.30 7.67 -2.39 -0.02 2.29 16 40 H 0.04 1.20 6.91 -2.38 -0.02 1.18 16 41 H 0.02 0.84 7.96 -2.39 -0.02 0.82 16 42 H 0.07 2.43 8.07 -2.38 -0.02 2.41 16 43 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.04 1.98 7.14 -2.39 -0.02 1.96 16 45 H -0.01 -0.83 8.01 -2.39 -0.02 -0.85 16 46 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 47 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 Total: -1.00 -68.77 359.48 -1.50 -70.27 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.00 Total: 12.08 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 4.84 Total: -32.34 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -7.77 Total: -93.82 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.61 Total: -9.59 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.05 Total: 53.40 kcal Total: -68.77 -1.50 -70.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.457 kcal (2) G-P(sol) polarization free energy of solvation -68.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds