Wall clock time and date at job start Tue Mar 31 2020 06:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.45795 * 2 1 4 4 C 1.54378 * 110.41360 * 237.58579 * 2 1 3 5 5 C 1.54254 * 105.06168 * 217.36751 * 4 2 1 6 6 H 1.08999 * 110.32496 * 118.89632 * 5 4 2 7 7 N 1.46902 * 110.32559 * 241.00556 * 5 4 2 8 8 C 1.47016 * 110.99624 * 303.63242 * 7 5 4 9 9 C 1.53099 * 109.25504 * 177.60895 * 8 7 5 10 10 O 1.43009 * 109.25979 * 56.85284 * 9 8 7 11 11 C 1.43017 * 113.73663 * 301.32618 * 10 9 8 12 12 C 1.47014 * 111.00016 * 180.02562 * 7 5 4 13 13 C 1.54380 * 105.06104 * 0.02562 * 5 4 2 14 14 N 1.48554 * 110.41077 * 122.41068 * 2 1 3 15 15 C 1.46901 * 111.00689 * 277.82290 * 14 2 1 16 16 C 1.52992 * 109.47859 * 170.00093 * 15 14 2 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.08999 * 109.47693 * 297.58701 * 1 2 3 27 27 H 1.09003 * 109.47183 * 57.58768 * 1 2 3 28 28 H 1.08999 * 109.46753 * 177.58628 * 1 2 3 29 29 H 1.08997 * 110.32213 * 336.26893 * 4 2 1 30 30 H 1.08996 * 110.32017 * 98.36789 * 4 2 1 31 31 H 1.08998 * 109.50802 * 297.54061 * 8 7 5 32 32 H 1.09004 * 109.50790 * 57.67302 * 8 7 5 33 33 H 1.08995 * 109.50609 * 296.91362 * 9 8 7 34 34 H 1.09006 * 109.50178 * 176.78587 * 9 8 7 35 35 H 1.08999 * 109.50722 * 298.73465 * 11 10 9 36 36 H 1.09003 * 109.54127 * 178.62850 * 11 10 9 37 37 H 1.09005 * 109.50279 * 302.31949 * 12 7 5 38 38 H 1.08996 * 109.50964 * 62.40601 * 12 7 5 39 39 H 1.09004 * 110.41416 * 265.07377 * 13 5 4 40 40 H 1.09004 * 110.41074 * 142.62915 * 13 5 4 41 41 H 1.09002 * 109.46980 * 49.99752 * 15 14 2 42 42 H 1.09001 * 109.46628 * 290.00173 * 15 14 2 43 43 H 1.09002 * 109.47103 * 59.99734 * 16 15 14 44 44 H 1.08998 * 109.46862 * 300.00546 * 16 15 14 45 45 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 46 46 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 47 47 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 6 3.3177 -1.5188 -0.7054 6 1 3.1861 -2.5960 -0.8065 7 7 4.5120 -1.0803 -1.4398 8 6 4.3407 -1.2734 -2.8872 9 6 5.5808 -0.7498 -3.6166 10 8 6.7409 -1.4187 -3.1148 11 6 6.9386 -1.2514 -1.7083 12 6 5.7123 -1.7805 -0.9598 13 6 3.4287 -1.1303 0.7846 14 7 2.0481 -0.7462 1.1754 15 6 2.0568 0.1013 2.3752 16 6 2.3547 -0.7585 3.6051 17 6 2.3644 0.1244 4.8546 18 6 2.6572 -0.7228 6.0660 19 1 2.8205 -1.7846 5.9558 20 6 2.7177 -0.1420 7.3151 21 7 2.5193 1.1511 7.4492 22 14 3.0813 -1.1919 8.8166 23 1 3.2648 -2.6054 8.3997 24 1 4.3214 -0.7049 9.4726 25 1 1.9475 -1.1002 9.7712 26 1 -0.3634 0.4759 0.9108 27 1 -0.3634 0.5508 -0.8676 28 1 -0.3633 -1.0268 -0.0433 29 1 1.3235 -1.4879 -1.5759 30 1 2.3399 -0.0842 -2.0191 31 1 4.2142 -2.3348 -3.1004 32 1 3.4610 -0.7260 -3.2258 33 1 5.6771 0.3226 -3.4470 34 1 5.4830 -0.9426 -4.6850 35 1 7.0745 -0.1935 -1.4832 36 1 7.8232 -1.8065 -1.3959 37 1 5.8341 -1.6033 0.1088 38 1 5.6071 -2.8500 -1.1418 39 1 4.1068 -0.2858 0.9079 40 1 3.7686 -1.9812 1.3751 41 1 1.0827 0.5765 2.4914 42 1 2.8251 0.8677 2.2730 43 1 3.3288 -1.2337 3.4889 44 1 1.5865 -1.5250 3.7072 45 1 1.3905 0.5999 4.9710 46 1 3.1329 0.8905 4.7521 47 1 2.5615 1.5596 8.3280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375744996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:07 Heat of formation + Delta-G solvation = -45.635363 kcal Electronic energy + Delta-G solvation = -22974.897075 eV Core-core repulsion = 19771.084062 eV Total energy + Delta-G solvation = -3203.813013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.23524 -38.72813 -35.79426 -34.06818 -32.34244 -31.55223 -30.79367 -29.88126 -26.80372 -26.30906 -25.18546 -23.84996 -22.62888 -21.21246 -20.44112 -19.95473 -19.58328 -17.18418 -16.33561 -16.25103 -15.63762 -15.46272 -15.33121 -14.96074 -14.73277 -14.41669 -14.12528 -13.91701 -13.69343 -12.95994 -12.61101 -12.47385 -12.29804 -12.10446 -11.98016 -11.85724 -11.64123 -11.35655 -11.09257 -11.08434 -10.83470 -10.78919 -10.71962 -10.69208 -10.47619 -10.40247 -9.90530 -9.59732 -9.29012 -9.01680 -8.61040 -8.32347 -8.21428 -5.97334 -3.99087 3.32613 3.39901 3.41590 3.44617 3.62356 4.26974 4.41531 4.49239 4.61809 4.66816 4.75060 4.88761 4.94105 5.01675 5.06369 5.25027 5.27975 5.35552 5.38557 5.41886 5.50856 5.53083 5.58371 5.65587 5.68629 5.73021 5.77443 5.86811 5.91148 5.98382 6.01776 6.13870 6.28147 6.41578 6.66187 6.70143 6.79557 6.83643 6.87428 7.11480 7.25421 7.40861 7.71964 7.87030 8.03595 8.47244 9.08417 9.64785 11.14195 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.003354 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.181969 B = 8346.071333 C = 9380.229986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.051 0.949 4 C -0.114 4.114 5 C 0.079 3.921 6 H 0.051 0.949 7 N -0.530 5.530 8 C 0.014 3.986 9 C 0.064 3.936 10 O -0.388 6.388 11 C 0.064 3.936 12 C 0.016 3.984 13 C 0.044 3.956 14 N -0.505 5.505 15 C 0.047 3.953 16 C -0.101 4.101 17 C 0.021 3.979 18 C -0.517 4.517 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.015 0.985 46 H 0.013 0.987 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -3.389 -23.160 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.049 4.049 3 H 0.069 0.931 4 C -0.152 4.152 5 C -0.029 4.029 6 H 0.069 0.931 7 N -0.257 5.257 8 C -0.114 4.114 9 C -0.013 4.013 10 O -0.306 6.306 11 C -0.013 4.013 12 C -0.113 4.113 13 C -0.084 4.084 14 N -0.230 5.230 15 C -0.081 4.081 16 C -0.139 4.139 17 C -0.016 4.016 18 C -0.555 4.555 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.861 -3.321 -22.918 23.334 hybrid contribution 0.380 -0.445 0.902 1.075 sum 3.241 -3.766 -22.017 22.570 Atomic orbital electron populations 1.21711 0.94000 1.02221 1.01410 1.22571 0.95922 0.96023 0.90428 0.93101 1.22499 0.95838 0.99154 0.97677 1.22416 0.89137 0.97442 0.93942 0.93063 1.62351 1.02942 1.57168 1.03193 1.22831 0.99631 1.00216 0.88689 1.22656 0.84133 0.96664 0.97842 1.87972 1.45228 1.74351 1.23096 1.22679 0.96919 1.01186 0.80508 1.22806 0.90776 0.96629 1.01044 1.23085 0.91290 1.01012 0.93024 1.65416 1.16955 1.37850 1.02764 1.22459 1.00738 0.94675 0.90203 1.21571 1.00100 0.98595 0.93603 1.19079 0.97051 0.94729 0.90752 1.21294 1.47683 0.94626 0.91890 0.92663 1.25031 0.95515 0.94931 0.99083 1.69978 1.50372 1.09958 1.23318 0.86552 0.77860 0.80667 0.83027 1.19733 1.21063 1.21029 0.92309 0.92775 0.92010 0.91016 0.90631 0.94026 0.89276 0.92286 0.88603 0.92160 0.88382 0.89115 0.93866 0.92686 0.90230 0.91200 0.95033 0.93735 0.92704 0.96666 0.96876 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.36 37.16 0.35 -1.22 16 2 C 0.06 0.75 2.87 -66.08 -0.19 0.56 16 3 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 4 C -0.11 -1.21 5.66 -25.35 -0.14 -1.35 16 5 C 0.08 0.91 2.78 -66.33 -0.18 0.73 16 6 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 7 N -0.53 -5.63 4.53 -224.67 -1.02 -6.65 16 8 C 0.01 0.13 5.33 -3.71 -0.02 0.11 16 9 C 0.06 0.55 7.01 37.21 0.26 0.81 16 10 O -0.39 -4.12 10.83 -35.23 -0.38 -4.50 16 11 C 0.06 0.60 7.01 37.21 0.26 0.86 16 12 C 0.02 0.16 5.48 -3.71 -0.02 0.14 16 13 C 0.04 0.62 4.40 -2.19 -0.01 0.61 16 14 N -0.51 -7.70 5.02 -222.17 -1.11 -8.81 16 15 C 0.05 0.84 4.78 -3.83 -0.02 0.82 16 16 C -0.10 -2.14 5.27 -26.74 -0.14 -2.28 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 22 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H 0.06 0.74 7.28 -51.93 -0.38 0.36 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 29 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 30 H 0.08 0.73 6.19 -51.93 -0.32 0.41 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.69 6.07 -51.93 -0.32 0.38 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.93 7.15 -51.93 -0.37 0.56 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.82 7.59 -51.93 -0.39 0.42 16 40 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 41 H 0.07 1.25 7.16 -51.93 -0.37 0.88 16 42 H 0.03 0.57 7.77 -51.93 -0.40 0.17 16 43 H 0.04 0.94 7.47 -51.93 -0.39 0.55 16 44 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -31.04 358.06 -10.59 -41.63 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.78 Total: -3.90 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.41 Total: -13.51 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: -1.40 Total: -42.03 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.38 Total: -4.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.04 -10.59 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.002 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds