Wall clock time and date at job start Tue Mar 31 2020 06:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.45795 * 2 1 4 4 C 1.54378 * 110.41360 * 237.58579 * 2 1 3 5 5 C 1.54254 * 105.06168 * 217.36751 * 4 2 1 6 6 H 1.08999 * 110.32496 * 118.89632 * 5 4 2 7 7 N 1.46902 * 110.32559 * 241.00556 * 5 4 2 8 8 C 1.47016 * 110.99624 * 303.63242 * 7 5 4 9 9 C 1.53099 * 109.25504 * 177.60895 * 8 7 5 10 10 O 1.43009 * 109.25979 * 56.85284 * 9 8 7 11 11 C 1.43017 * 113.73663 * 301.32618 * 10 9 8 12 12 C 1.47014 * 111.00016 * 180.02562 * 7 5 4 13 13 C 1.54380 * 105.06104 * 0.02562 * 5 4 2 14 14 N 1.48554 * 110.41077 * 122.41068 * 2 1 3 15 15 C 1.46901 * 111.00689 * 277.82290 * 14 2 1 16 16 C 1.52992 * 109.47859 * 170.00093 * 15 14 2 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.08999 * 109.47693 * 297.58701 * 1 2 3 27 27 H 1.09003 * 109.47183 * 57.58768 * 1 2 3 28 28 H 1.08999 * 109.46753 * 177.58628 * 1 2 3 29 29 H 1.08997 * 110.32213 * 336.26893 * 4 2 1 30 30 H 1.08996 * 110.32017 * 98.36789 * 4 2 1 31 31 H 1.08998 * 109.50802 * 297.54061 * 8 7 5 32 32 H 1.09004 * 109.50790 * 57.67302 * 8 7 5 33 33 H 1.08995 * 109.50609 * 296.91362 * 9 8 7 34 34 H 1.09006 * 109.50178 * 176.78587 * 9 8 7 35 35 H 1.08999 * 109.50722 * 298.73465 * 11 10 9 36 36 H 1.09003 * 109.54127 * 178.62850 * 11 10 9 37 37 H 1.09005 * 109.50279 * 302.31949 * 12 7 5 38 38 H 1.08996 * 109.50964 * 62.40601 * 12 7 5 39 39 H 1.09004 * 110.41416 * 265.07377 * 13 5 4 40 40 H 1.09004 * 110.41074 * 142.62915 * 13 5 4 41 41 H 1.09002 * 109.46980 * 49.99752 * 15 14 2 42 42 H 1.09001 * 109.46628 * 290.00173 * 15 14 2 43 43 H 1.09002 * 109.47103 * 59.99734 * 16 15 14 44 44 H 1.08998 * 109.46862 * 300.00546 * 16 15 14 45 45 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 46 46 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 47 47 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2214 5 6 3.3177 -1.5188 -0.7054 6 1 3.1861 -2.5960 -0.8065 7 7 4.5120 -1.0803 -1.4398 8 6 4.3407 -1.2734 -2.8872 9 6 5.5808 -0.7498 -3.6166 10 8 6.7409 -1.4187 -3.1148 11 6 6.9386 -1.2514 -1.7083 12 6 5.7123 -1.7805 -0.9598 13 6 3.4287 -1.1303 0.7846 14 7 2.0481 -0.7462 1.1754 15 6 2.0568 0.1013 2.3752 16 6 2.3547 -0.7585 3.6051 17 6 2.3644 0.1244 4.8546 18 6 2.6572 -0.7228 6.0660 19 1 2.8205 -1.7846 5.9558 20 6 2.7177 -0.1420 7.3151 21 7 2.5193 1.1511 7.4492 22 14 3.0813 -1.1919 8.8166 23 1 3.2648 -2.6054 8.3997 24 1 4.3214 -0.7049 9.4726 25 1 1.9475 -1.1002 9.7712 26 1 -0.3634 0.4759 0.9108 27 1 -0.3634 0.5508 -0.8676 28 1 -0.3633 -1.0268 -0.0433 29 1 1.3235 -1.4879 -1.5759 30 1 2.3399 -0.0842 -2.0191 31 1 4.2142 -2.3348 -3.1004 32 1 3.4610 -0.7260 -3.2258 33 1 5.6771 0.3226 -3.4470 34 1 5.4830 -0.9426 -4.6850 35 1 7.0745 -0.1935 -1.4832 36 1 7.8232 -1.8065 -1.3959 37 1 5.8341 -1.6033 0.1088 38 1 5.6071 -2.8500 -1.1418 39 1 4.1068 -0.2858 0.9079 40 1 3.7686 -1.9812 1.3751 41 1 1.0827 0.5765 2.4914 42 1 2.8251 0.8677 2.2730 43 1 3.3288 -1.2337 3.4889 44 1 1.5865 -1.5250 3.7072 45 1 1.3905 0.5999 4.9710 46 1 3.1329 0.8905 4.7521 47 1 2.5615 1.5596 8.3280 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375744996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:06 Heat of formation + Delta-G solvation = -66.851066 kcal Electronic energy + Delta-G solvation = -22975.817057 eV Core-core repulsion = 19771.084062 eV Total energy + Delta-G solvation = -3204.732995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.12628 -39.69065 -36.86936 -35.79901 -34.08667 -32.42422 -31.79807 -31.28541 -28.17517 -27.38368 -26.46688 -24.63765 -24.34883 -22.31983 -21.59061 -21.28362 -20.66125 -18.54535 -17.93262 -17.07873 -16.74943 -16.50602 -16.41215 -16.16090 -15.88419 -15.78236 -15.29656 -14.98277 -14.78701 -14.40074 -14.05133 -13.78505 -13.52921 -13.27162 -13.08547 -12.94350 -12.83669 -12.68257 -12.55526 -12.36682 -12.33565 -12.13637 -11.89288 -11.74931 -11.67906 -11.48568 -11.41442 -11.34458 -11.06553 -10.66284 -10.56861 -9.47738 -9.41859 -8.21179 -6.32250 1.39104 1.39411 1.53147 2.39996 2.56794 2.92979 3.11820 3.15894 3.47880 3.64114 3.93808 4.00947 4.04336 4.14388 4.18787 4.21953 4.28975 4.32527 4.36561 4.49760 4.51921 4.58920 4.68791 4.69524 4.75671 4.78114 4.80851 4.86419 4.89299 4.92787 4.98041 4.98461 5.04091 5.13475 5.19047 5.21712 5.40030 5.50993 5.70482 5.83789 5.84609 5.91523 6.05717 6.11286 6.16612 6.26685 6.84396 7.36983 8.91028 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.003354 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.181969 B = 8346.071333 C = 9380.229986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 H 0.044 0.956 4 C -0.104 4.104 5 C 0.088 3.912 6 H 0.050 0.950 7 N -0.538 5.538 8 C 0.016 3.984 9 C 0.061 3.939 10 O -0.404 6.404 11 C 0.066 3.934 12 C 0.016 3.984 13 C 0.045 3.955 14 N -0.513 5.513 15 C 0.061 3.939 16 C -0.084 4.084 17 C 0.027 3.973 18 C -0.542 4.542 19 H 0.058 0.942 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.044 0.956 44 H 0.050 0.950 45 H -0.008 1.008 46 H -0.011 1.011 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -4.377 -24.483 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 H 0.062 0.938 4 C -0.142 4.142 5 C -0.021 4.021 6 H 0.068 0.932 7 N -0.265 5.265 8 C -0.112 4.112 9 C -0.015 4.015 10 O -0.323 6.323 11 C -0.011 4.011 12 C -0.112 4.112 13 C -0.084 4.084 14 N -0.237 5.237 15 C -0.067 4.067 16 C -0.122 4.122 17 C -0.011 4.011 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.010 0.990 46 H 0.007 0.993 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.843 -4.314 -24.266 24.810 hybrid contribution 0.388 -0.100 1.286 1.347 sum 3.231 -4.414 -22.981 23.623 Atomic orbital electron populations 1.21699 0.92973 1.02496 1.01784 1.22694 0.96735 0.95730 0.90082 0.93752 1.22472 0.95449 0.99345 0.96897 1.22272 0.90098 0.97449 0.92300 0.93160 1.62350 1.02581 1.57266 1.04265 1.22896 1.00510 1.00388 0.87371 1.22823 0.83258 0.96503 0.98943 1.87952 1.46157 1.74755 1.23462 1.22718 0.97033 1.01233 0.80140 1.22795 0.91128 0.96475 1.00798 1.23057 0.90279 1.00106 0.94939 1.65363 1.17900 1.37580 1.02853 1.22144 1.00260 0.94036 0.90300 1.21302 0.99964 0.97886 0.93067 1.18965 0.94722 0.94599 0.92793 1.21703 1.48071 0.95062 0.93160 0.92405 1.25994 0.95005 0.96285 1.02591 1.70104 1.51009 1.11825 1.24435 0.85387 0.77936 0.79069 0.78586 1.18664 1.20236 1.20228 0.93894 0.90275 0.91936 0.89610 0.89030 0.94217 0.87750 0.92270 0.86450 0.92390 0.87039 0.89849 0.94139 0.93874 0.91230 0.91402 0.95776 0.93717 0.93088 0.98990 0.99277 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.36 71.98 0.67 -2.15 16 2 C 0.06 1.34 2.87 45.06 0.13 1.47 16 3 H 0.04 1.14 8.00 -2.39 -0.02 1.12 16 4 C -0.10 -1.95 5.66 31.49 0.18 -1.77 16 5 C 0.09 1.89 2.78 45.81 0.13 2.02 16 6 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 7 N -0.54 -10.66 4.53 -864.73 -3.92 -14.58 16 8 C 0.02 0.25 5.33 86.31 0.46 0.71 16 9 C 0.06 0.91 7.01 72.02 0.50 1.42 16 10 O -0.40 -7.96 10.83 -148.98 -1.61 -9.57 16 11 C 0.07 1.16 7.01 72.02 0.50 1.67 16 12 C 0.02 0.32 5.48 86.31 0.47 0.79 16 13 C 0.04 1.23 4.40 86.45 0.38 1.61 16 14 N -0.51 -15.44 5.02 -856.80 -4.30 -19.74 16 15 C 0.06 2.22 4.78 86.30 0.41 2.63 16 16 C -0.08 -3.67 5.27 30.59 0.16 -3.51 16 17 C 0.03 1.47 4.97 29.85 0.15 1.61 16 18 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 21 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 22 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H 0.04 1.05 7.28 -2.39 -0.02 1.03 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 29 H 0.09 1.42 7.82 -2.39 -0.02 1.40 16 30 H 0.09 1.46 6.19 -2.39 -0.01 1.45 16 31 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.29 6.07 -2.39 -0.01 1.27 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.72 7.15 -2.38 -0.02 1.70 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.04 1.29 7.59 -2.38 -0.02 1.28 16 40 H 0.07 2.03 7.85 -2.39 -0.02 2.01 16 41 H 0.07 2.48 7.16 -2.39 -0.02 2.46 16 42 H 0.02 0.90 7.77 -2.39 -0.02 0.89 16 43 H 0.04 1.92 7.47 -2.39 -0.02 1.90 16 44 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 45 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -66.81 358.06 -1.77 -68.58 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.90 Total: 10.41 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 4.85 Total: -24.70 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -7.93 Total: -91.82 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.61 Total: -9.57 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.81 -1.77 -68.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375744996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.728 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds