Wall clock time and date at job start Tue Mar 31 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47079 * 2 1 4 4 N 1.46501 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.34781 * 120.00042 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99674 * 359.72543 * 5 4 3 7 7 C 1.50694 * 120.00064 * 179.72699 * 5 4 3 8 8 H 1.09000 * 109.47014 * 328.15210 * 7 5 4 9 9 C 1.52994 * 109.47335 * 88.15494 * 7 5 4 10 10 N 1.46905 * 109.46982 * 208.15602 * 7 5 4 11 11 C 1.46842 * 111.00019 * 289.29077 * 10 7 5 12 12 C 1.53038 * 109.52238 * 185.83874 * 11 10 7 13 13 C 1.53114 * 109.28041 * 300.82123 * 12 11 10 14 14 C 1.52998 * 109.52302 * 177.55606 * 13 12 11 15 15 C 1.50698 * 109.46914 * 65.32003 * 14 13 12 16 16 H 1.07997 * 120.00252 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00103 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00542 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00215 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47287 * 89.99420 * 19 17 15 21 21 H 1.48490 * 109.47402 * 209.99989 * 19 17 15 22 22 H 1.48504 * 109.46652 * 329.99895 * 19 17 15 23 23 C 1.53119 * 109.16152 * 57.65435 * 13 12 11 24 24 C 1.46847 * 110.99874 * 53.50157 * 10 7 5 25 25 H 1.09000 * 109.47278 * 299.99243 * 1 2 3 26 26 H 1.08998 * 109.47662 * 60.00012 * 1 2 3 27 27 H 1.09005 * 109.46528 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.47394 * 240.00223 * 2 1 3 29 29 H 1.08998 * 109.47662 * 119.99988 * 2 1 3 30 30 H 1.09004 * 109.47260 * 59.99893 * 3 2 1 31 31 H 1.09004 * 109.47092 * 300.00079 * 3 2 1 32 32 H 0.97000 * 119.99884 * 359.72724 * 4 3 2 33 33 H 1.09002 * 109.47497 * 180.02562 * 9 7 5 34 34 H 1.09000 * 109.47658 * 300.00201 * 9 7 5 35 35 H 1.09001 * 109.46956 * 60.00299 * 9 7 5 36 36 H 1.08999 * 109.46241 * 305.85826 * 11 10 7 37 37 H 1.08999 * 109.46320 * 65.82306 * 11 10 7 38 38 H 1.09001 * 109.50154 * 180.87863 * 12 11 10 39 39 H 1.09007 * 109.49948 * 60.76282 * 12 11 10 40 40 H 1.09001 * 109.52276 * 297.75123 * 13 12 11 41 41 H 1.09009 * 109.47083 * 185.31470 * 14 13 12 42 42 H 1.08998 * 109.47223 * 305.31551 * 14 13 12 43 43 H 0.97000 * 120.00462 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.50782 * 182.40835 * 23 13 12 45 45 H 1.09001 * 109.50753 * 62.28445 * 23 13 12 46 46 H 1.08998 * 109.46350 * 294.17219 * 24 10 7 47 47 H 1.09000 * 109.46398 * 54.14484 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0012 6 8 3.5723 3.6601 -0.0063 7 6 5.6857 2.6099 0.0043 8 1 6.0471 1.7384 0.5503 9 6 6.2011 2.5596 -1.4353 10 7 6.1729 3.8328 0.6564 11 6 5.9244 5.0117 -0.1831 12 6 6.5715 6.2415 0.4577 13 6 5.9816 6.4532 1.8547 14 6 6.6683 7.6451 2.5245 15 6 6.3398 8.9052 1.7660 16 1 5.7045 8.8605 0.8938 17 6 6.8495 10.1155 2.1862 18 7 6.5633 11.2151 1.5240 19 14 7.9478 10.1931 3.6952 20 1 9.3647 10.0205 3.2857 21 1 7.7819 11.5100 4.3610 22 1 7.5698 9.1104 4.6387 23 6 6.2113 5.1929 2.6934 24 6 5.5745 3.9934 1.9878 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9900 0.6025 0.0031 33 1 7.2911 2.5592 -1.4313 34 1 5.8397 1.6523 -1.9192 35 1 5.8398 3.4312 -1.9812 36 1 6.3525 4.8498 -1.1723 37 1 4.8502 5.1726 -0.2744 38 1 6.3736 7.1192 -0.1577 39 1 7.6477 6.0869 0.5366 40 1 4.9120 6.6464 1.7730 41 1 6.3159 7.7372 3.5519 42 1 7.7473 7.4908 2.5229 43 1 6.9221 12.0665 1.8194 44 1 5.7560 5.3212 3.6754 45 1 7.2817 5.0217 2.8076 46 1 4.5020 4.1591 1.8864 47 1 5.7487 3.0920 2.5754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399340907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:56 Heat of formation + Delta-G solvation = -54.819102 kcal Electronic energy + Delta-G solvation = -23159.384470 eV Core-core repulsion = 19955.173220 eV Total energy + Delta-G solvation = -3204.211250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56981 -38.12017 -36.02261 -34.82248 -33.03828 -32.38249 -30.82710 -30.06863 -27.71739 -26.80038 -24.34860 -23.15761 -22.22597 -21.85196 -20.72032 -19.87456 -18.96145 -17.09713 -16.70935 -16.50416 -16.04106 -15.38702 -14.82254 -14.50125 -14.43294 -14.19216 -13.60352 -13.39117 -13.20500 -13.00195 -12.91938 -12.48916 -12.41406 -12.34570 -12.23227 -11.82174 -11.66951 -11.53864 -11.32021 -11.24736 -11.18008 -10.74894 -10.57624 -10.45592 -10.16794 -10.01192 -9.65836 -9.45126 -9.24805 -9.11150 -8.88197 -8.42888 -7.90229 -5.93539 -3.89702 2.53703 3.00830 3.38097 3.44922 3.49896 4.02759 4.43243 4.54885 4.55693 4.64991 4.84017 4.86287 5.02788 5.23337 5.23425 5.28177 5.39039 5.39969 5.47949 5.52820 5.60676 5.67166 5.71593 5.74580 5.81060 5.88698 5.96374 5.99732 6.13648 6.20357 6.27267 6.46495 6.49078 6.63608 6.68280 6.97443 7.08141 7.17524 7.18135 7.36761 7.38080 7.47576 7.62779 7.92610 8.13648 8.67310 9.12940 9.69929 11.20060 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027736 B = 0.003372 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.290323 B = 8300.931462 C = 8565.037398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.115 3.885 4 N -0.735 5.735 5 C 0.483 3.517 6 O -0.526 6.526 7 C 0.065 3.935 8 H 0.097 0.903 9 C -0.144 4.144 10 N -0.507 5.507 11 C 0.034 3.966 12 C -0.098 4.098 13 C -0.072 4.072 14 C -0.008 4.008 15 C -0.511 4.511 16 H 0.073 0.927 17 C 0.063 3.937 18 N -0.907 5.907 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.266 1.266 23 C -0.111 4.111 24 C 0.047 3.953 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.013 0.987 42 H 0.011 0.989 43 H 0.261 0.739 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -26.499 -3.849 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.389 5.389 5 C 0.268 3.732 6 O -0.401 6.401 7 C -0.048 4.048 8 H 0.115 0.885 9 C -0.201 4.201 10 N -0.230 5.230 11 C -0.093 4.093 12 C -0.136 4.136 13 C -0.091 4.091 14 C -0.046 4.046 15 C -0.549 4.549 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.547 5.547 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.148 4.148 24 C -0.081 4.081 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.698 -25.547 -3.787 26.448 hybrid contribution -0.117 -0.212 0.748 0.786 sum -5.814 -25.759 -3.040 26.582 Atomic orbital electron populations 1.21684 0.94573 1.02095 1.02467 1.21728 0.97028 0.95915 1.02574 1.21389 0.80107 0.96934 1.02438 1.46299 1.07192 1.08968 1.76428 1.22358 0.91783 0.83615 0.75441 1.90706 1.70419 1.30782 1.48220 1.21935 0.88080 0.96696 0.98066 0.88478 1.21866 1.02730 1.02399 0.93136 1.62513 1.55635 1.01759 1.03124 1.22579 1.01387 0.89713 0.95643 1.21532 0.99525 0.95670 0.96873 1.21032 0.99934 0.93766 0.94329 1.19612 0.95257 0.93806 0.95903 1.21185 1.30514 0.90063 1.13096 0.90925 1.25037 0.96226 0.95752 0.96662 1.69924 1.45889 0.98528 1.40346 0.86795 0.81310 0.77201 0.84077 1.20413 1.21613 1.19077 1.21676 1.00688 0.94353 0.98122 1.22244 0.97899 0.98718 0.89192 0.92288 0.92313 0.92218 0.91392 0.91379 0.91620 0.91618 0.76840 0.90331 0.92157 0.91261 0.91433 0.91619 0.90518 0.92367 0.92294 0.96902 0.97079 0.92944 0.92280 0.91822 0.93452 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.13 -0.76 6.05 -26.73 -0.16 -0.93 16 3 C 0.12 1.01 5.67 -4.04 -0.02 0.98 16 4 N -0.74 -6.58 5.56 -60.29 -0.33 -6.92 16 5 C 0.48 6.09 6.02 -10.99 -0.07 6.02 16 6 O -0.53 -9.03 12.45 5.56 0.07 -8.97 16 7 C 0.07 0.74 2.95 -68.87 -0.20 0.54 16 8 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 9 C -0.14 -1.39 8.57 37.15 0.32 -1.07 16 10 N -0.51 -7.56 4.73 -228.09 -1.08 -8.64 16 11 C 0.03 0.57 4.62 -3.84 -0.02 0.56 16 12 C -0.10 -1.97 5.15 -26.65 -0.14 -2.11 16 13 C -0.07 -1.54 2.20 -90.50 -0.20 -1.74 16 14 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 15 C -0.51 -14.97 9.00 -34.44 -0.31 -15.28 16 16 H 0.07 2.29 7.33 -52.49 -0.38 1.91 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.78 13.96 55.43 0.77 -28.01 16 19 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 23 C -0.11 -1.97 5.38 -26.65 -0.14 -2.11 16 24 C 0.05 0.74 4.89 -3.83 -0.02 0.72 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 2.31 8.47 -40.82 -0.35 1.97 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.78 6.19 -51.93 -0.32 0.46 16 36 H 0.07 1.04 5.82 -51.93 -0.30 0.74 16 37 H 0.07 1.27 5.67 -51.93 -0.29 0.98 16 38 H 0.08 1.70 7.05 -51.93 -0.37 1.33 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.01 0.32 7.20 -51.92 -0.37 -0.05 16 42 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.05 0.84 6.09 -51.93 -0.32 0.52 16 47 H 0.06 0.81 8.12 -51.93 -0.42 0.38 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -33.93 356.12 -9.27 -43.20 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.61 Total: -0.52 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -0.79 Total: -13.36 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.64 Total: -43.57 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.93 -9.27 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399340907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.618 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds