Wall clock time and date at job start Tue Mar 31 2020 06:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.46916 * 2 1 4 4 C 1.50698 * 109.47379 * 240.00142 * 2 1 3 5 5 H 1.07999 * 119.99932 * 240.00275 * 4 2 1 6 6 C 1.37877 * 120.00194 * 59.99428 * 4 2 1 7 7 N 1.31518 * 119.99774 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00105 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47109 * 90.00098 * 8 6 4 10 10 H 1.48500 * 109.47217 * 210.00551 * 8 6 4 11 11 H 1.48509 * 109.46875 * 330.00429 * 8 6 4 12 12 N 1.46504 * 109.47343 * 119.99702 * 2 1 3 13 13 C 1.46493 * 119.99672 * 59.99852 * 12 2 1 14 14 C 1.34774 * 120.00140 * 239.99983 * 12 2 1 15 15 O 1.21288 * 120.00038 * 359.97438 * 14 12 2 16 16 C 1.50698 * 119.99836 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.47179 * 304.72087 * 16 14 12 18 18 C 1.52995 * 109.46942 * 64.72785 * 16 14 12 19 19 N 1.46903 * 109.46921 * 184.72601 * 16 14 12 20 20 C 1.48562 * 110.99908 * 160.38619 * 19 16 14 21 21 H 1.09005 * 110.40819 * 40.26415 * 20 19 16 22 22 C 1.52995 * 110.41379 * 277.81944 * 20 19 16 23 23 C 1.54386 * 104.59237 * 159.03894 * 20 19 16 24 24 C 1.54258 * 105.06193 * 336.14695 * 23 20 19 25 25 C 1.48561 * 111.00180 * 275.80515 * 19 16 14 26 26 H 1.08999 * 110.41016 * 319.74357 * 25 19 16 27 27 C 1.53003 * 110.40906 * 82.18064 * 25 19 16 28 28 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47441 * 300.00317 * 1 2 3 30 30 H 1.09003 * 109.47403 * 59.99839 * 1 2 3 31 31 H 0.96994 * 119.99404 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47373 * 90.00306 * 13 12 2 33 33 H 1.09002 * 109.47347 * 209.99803 * 13 12 2 34 34 H 1.08997 * 109.47495 * 330.00227 * 13 12 2 35 35 H 1.08994 * 109.47301 * 291.16325 * 18 16 14 36 36 H 1.08997 * 109.47239 * 51.16964 * 18 16 14 37 37 H 1.09009 * 109.47227 * 171.16783 * 18 16 14 38 38 H 1.08997 * 109.47244 * 60.00236 * 22 20 19 39 39 H 1.08997 * 109.47297 * 180.02562 * 22 20 19 40 40 H 1.09001 * 109.46968 * 299.99846 * 22 20 19 41 41 H 1.09003 * 110.32229 * 95.04708 * 23 20 19 42 42 H 1.08998 * 110.32077 * 217.14742 * 23 20 19 43 43 H 1.09005 * 110.32251 * 118.89465 * 24 23 20 44 44 H 1.08998 * 110.32674 * 240.99980 * 24 23 20 45 45 H 1.08994 * 109.47104 * 49.48933 * 27 25 19 46 46 H 1.09002 * 109.46755 * 169.48637 * 27 25 19 47 47 H 1.09003 * 109.47012 * 289.48736 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0930 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0866 1.1255 1.8911 16 6 3.2950 -0.7458 3.3141 17 1 2.4503 -1.1606 3.8640 18 6 4.2395 -1.8763 2.9009 19 7 4.0159 0.2066 4.1693 20 6 4.1150 -0.2986 5.5628 21 1 4.3207 -1.3690 5.5653 22 6 2.8265 0.0003 6.3317 23 6 5.3001 0.4789 6.1750 24 6 6.1640 0.9064 4.9707 25 6 5.4283 0.3514 3.7321 26 1 5.8395 -0.6173 3.4482 27 6 5.5277 1.3371 2.5662 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7094 1.1616 -3.4844 32 1 2.4157 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6904 -2.3001 0.9847 35 1 3.6710 -2.6601 2.4005 36 1 4.9973 -1.4866 2.2213 37 1 4.7232 -2.2877 3.7870 38 1 1.9866 -0.4870 5.8366 39 1 2.9160 -0.3759 7.3508 40 1 2.6592 1.0771 6.3557 41 1 4.9400 1.3559 6.7130 42 1 5.8713 -0.1659 6.8428 43 1 6.2280 1.9933 4.9175 44 1 7.1609 0.4724 5.0468 45 1 4.9864 2.2498 2.8150 46 1 6.5750 1.5751 2.3799 47 1 5.0926 0.8885 1.6731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412169707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:02 Heat of formation + Delta-G solvation = -20.158145 kcal Electronic energy + Delta-G solvation = -24441.156295 eV Core-core repulsion = 21238.448058 eV Total energy + Delta-G solvation = -3202.708238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23864 -38.25940 -35.20060 -33.69918 -32.61471 -32.37000 -29.61508 -28.40450 -27.74851 -26.14127 -25.19872 -24.24333 -23.69731 -21.17805 -20.29507 -19.30206 -18.10746 -16.59122 -16.50387 -15.89256 -15.26465 -14.84448 -14.54225 -14.46584 -14.11627 -13.66381 -13.33224 -13.10302 -12.62856 -12.56433 -12.41025 -12.30432 -11.91739 -11.78698 -11.69337 -11.49356 -11.43952 -11.35005 -11.13652 -11.00754 -10.85396 -10.74936 -10.64484 -10.61073 -10.39145 -10.22289 -10.11139 -10.10703 -9.10440 -8.70028 -8.39200 -8.11725 -7.44689 -6.03534 -4.11254 3.27525 3.34706 3.37081 3.53848 3.74406 4.28914 4.43695 4.59213 4.78993 4.98567 5.08393 5.22660 5.24147 5.26616 5.28852 5.37788 5.46851 5.59366 5.66141 5.69557 5.77262 5.82472 5.84400 5.93869 5.96240 6.06228 6.08290 6.14232 6.23269 6.27472 6.29266 6.36588 6.57654 6.81141 6.87590 6.95116 7.10275 7.16940 7.23581 7.54812 7.60931 7.77133 8.08106 8.25549 8.64300 8.89519 9.22873 9.55730 11.01549 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.004774 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.198736 B = 5863.442614 C = 6166.745087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.597 5.597 13 C 0.087 3.913 14 C 0.510 3.490 15 O -0.524 6.524 16 C 0.054 3.946 17 H 0.095 0.905 18 C -0.183 4.183 19 N -0.477 5.477 20 C 0.054 3.946 21 H 0.050 0.950 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.120 4.120 25 C 0.054 3.946 26 H 0.059 0.941 27 C -0.128 4.128 28 H 0.028 0.972 29 H 0.011 0.989 30 H 0.092 0.908 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.038 0.962 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.135 -5.519 15.782 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.329 5.329 13 C -0.057 4.057 14 C 0.296 3.704 15 O -0.400 6.400 16 C -0.059 4.059 17 H 0.112 0.888 18 C -0.242 4.242 19 N -0.201 5.201 20 C -0.054 4.054 21 H 0.067 0.933 22 C -0.193 4.193 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.053 4.053 26 H 0.076 0.924 27 C -0.185 4.185 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.892 -4.254 15.477 17.098 hybrid contribution 0.598 -1.523 -0.911 1.873 sum 6.490 -5.777 14.566 16.961 Atomic orbital electron populations 1.22089 0.98464 0.99197 1.00772 1.18875 0.90672 0.94493 0.79932 0.91914 1.21321 1.31614 1.12823 0.90359 0.92456 1.24888 0.95038 0.94973 0.98894 1.69884 1.36509 1.22591 1.23638 0.86528 0.79143 0.79310 0.82581 1.20681 1.21139 1.20021 1.48180 1.49573 1.11393 1.23786 1.21611 1.01340 0.83778 0.98944 1.20043 0.79414 0.87272 0.83711 1.90644 1.56572 1.16636 1.76149 1.21751 0.97719 0.91763 0.94663 0.88759 1.22470 1.00827 0.98954 1.01929 1.65313 1.12989 1.41675 1.00107 1.22655 0.95892 0.97047 0.89798 0.93251 1.21715 0.96369 1.02666 0.98568 1.22321 0.95771 1.00025 0.97453 1.22358 0.97824 1.01653 0.94026 1.22815 0.87913 0.98894 0.95717 0.92365 1.21787 0.99033 1.00022 0.97648 0.95257 0.97015 0.88915 0.92763 0.93414 0.93246 0.91083 0.90689 0.91298 0.92321 0.92802 0.92607 0.91708 0.91026 0.91815 0.90981 0.91875 0.91258 0.94299 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.95 37.15 0.33 -3.22 16 2 C 0.26 6.68 2.63 -69.09 -0.18 6.49 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.13 8.37 -34.44 -0.29 -14.42 16 5 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 N -0.60 -12.70 2.75 -175.27 -0.48 -13.19 16 13 C 0.09 1.47 8.15 59.84 0.49 1.96 16 14 C 0.51 10.56 6.45 -10.99 -0.07 10.49 16 15 O -0.52 -12.70 11.93 5.55 0.07 -12.63 16 16 C 0.05 0.84 1.82 -68.87 -0.13 0.71 16 17 H 0.09 1.35 6.03 -51.93 -0.31 1.04 16 18 C -0.18 -2.48 7.37 37.15 0.27 -2.21 16 19 N -0.48 -7.22 4.38 -207.87 -0.91 -8.13 16 20 C 0.05 0.64 2.71 -66.07 -0.18 0.47 16 21 H 0.05 0.55 6.83 -51.93 -0.35 0.19 16 22 C -0.14 -1.48 9.36 37.16 0.35 -1.13 16 23 C -0.12 -1.23 6.55 -25.35 -0.17 -1.40 16 24 C -0.12 -1.40 6.55 -25.35 -0.17 -1.57 16 25 C 0.05 0.78 2.34 -66.07 -0.15 0.63 16 26 H 0.06 0.81 5.17 -51.93 -0.27 0.54 16 27 C -0.13 -2.17 7.68 37.16 0.29 -1.88 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.30 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 0.77 7.19 -51.93 -0.37 0.40 16 33 H 0.05 0.67 5.99 -51.93 -0.31 0.35 16 34 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 35 H 0.07 0.96 5.32 -51.93 -0.28 0.69 16 36 H 0.07 1.04 6.69 -51.93 -0.35 0.69 16 37 H 0.06 0.67 6.69 -51.92 -0.35 0.32 16 38 H 0.05 0.61 7.27 -51.93 -0.38 0.23 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 41 H 0.07 0.74 7.82 -51.93 -0.41 0.33 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.31 7.73 -51.93 -0.40 0.90 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 1.40 5.99 -51.93 -0.31 1.09 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -30.33 342.87 -8.17 -38.50 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.92 Total: 2.23 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 0.30 Total: -3.42 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.76 Total: -45.97 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.07 Total: -12.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.33 -8.17 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.340 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds