Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.46916 * 2 1 4 4 C 1.50698 * 109.47379 * 240.00142 * 2 1 3 5 5 H 1.07999 * 119.99932 * 240.00275 * 4 2 1 6 6 C 1.37877 * 120.00194 * 59.99428 * 4 2 1 7 7 N 1.31518 * 119.99774 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00105 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47109 * 90.00098 * 8 6 4 10 10 H 1.48500 * 109.47217 * 210.00551 * 8 6 4 11 11 H 1.48509 * 109.46875 * 330.00429 * 8 6 4 12 12 N 1.46504 * 109.47343 * 119.99702 * 2 1 3 13 13 C 1.46493 * 119.99672 * 59.99852 * 12 2 1 14 14 C 1.34774 * 120.00140 * 239.99983 * 12 2 1 15 15 O 1.21288 * 120.00038 * 359.97438 * 14 12 2 16 16 C 1.50698 * 119.99836 * 179.97438 * 14 12 2 17 17 H 1.09000 * 109.47179 * 304.72087 * 16 14 12 18 18 C 1.52995 * 109.46942 * 64.72785 * 16 14 12 19 19 N 1.46903 * 109.46921 * 184.72601 * 16 14 12 20 20 C 1.48562 * 110.99908 * 160.38619 * 19 16 14 21 21 H 1.09005 * 110.40819 * 40.26415 * 20 19 16 22 22 C 1.52995 * 110.41379 * 277.81944 * 20 19 16 23 23 C 1.54386 * 104.59237 * 159.03894 * 20 19 16 24 24 C 1.54258 * 105.06193 * 336.14695 * 23 20 19 25 25 C 1.48561 * 111.00180 * 275.80515 * 19 16 14 26 26 H 1.08999 * 110.41016 * 319.74357 * 25 19 16 27 27 C 1.53003 * 110.40906 * 82.18064 * 25 19 16 28 28 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47441 * 300.00317 * 1 2 3 30 30 H 1.09003 * 109.47403 * 59.99839 * 1 2 3 31 31 H 0.96994 * 119.99404 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47373 * 90.00306 * 13 12 2 33 33 H 1.09002 * 109.47347 * 209.99803 * 13 12 2 34 34 H 1.08997 * 109.47495 * 330.00227 * 13 12 2 35 35 H 1.08994 * 109.47301 * 291.16325 * 18 16 14 36 36 H 1.08997 * 109.47239 * 51.16964 * 18 16 14 37 37 H 1.09009 * 109.47227 * 171.16783 * 18 16 14 38 38 H 1.08997 * 109.47244 * 60.00236 * 22 20 19 39 39 H 1.08997 * 109.47297 * 180.02562 * 22 20 19 40 40 H 1.09001 * 109.46968 * 299.99846 * 22 20 19 41 41 H 1.09003 * 110.32229 * 95.04708 * 23 20 19 42 42 H 1.08998 * 110.32077 * 217.14742 * 23 20 19 43 43 H 1.09005 * 110.32251 * 118.89465 * 24 23 20 44 44 H 1.08998 * 110.32674 * 240.99980 * 24 23 20 45 45 H 1.08994 * 109.47104 * 49.48933 * 27 25 19 46 46 H 1.09002 * 109.46755 * 169.48637 * 27 25 19 47 47 H 1.09003 * 109.47012 * 289.48736 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0930 1.4281 14 6 2.7932 -0.0355 2.0833 15 8 3.0866 1.1255 1.8911 16 6 3.2950 -0.7458 3.3141 17 1 2.4503 -1.1606 3.8640 18 6 4.2395 -1.8763 2.9009 19 7 4.0159 0.2066 4.1693 20 6 4.1150 -0.2986 5.5628 21 1 4.3207 -1.3690 5.5653 22 6 2.8265 0.0003 6.3317 23 6 5.3001 0.4789 6.1750 24 6 6.1640 0.9064 4.9707 25 6 5.4283 0.3514 3.7321 26 1 5.8395 -0.6173 3.4482 27 6 5.5277 1.3371 2.5662 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7094 1.1616 -3.4844 32 1 2.4157 -2.7377 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6904 -2.3001 0.9847 35 1 3.6710 -2.6601 2.4005 36 1 4.9973 -1.4866 2.2213 37 1 4.7232 -2.2877 3.7870 38 1 1.9866 -0.4870 5.8366 39 1 2.9160 -0.3759 7.3508 40 1 2.6592 1.0771 6.3557 41 1 4.9400 1.3559 6.7130 42 1 5.8713 -0.1659 6.8428 43 1 6.2280 1.9933 4.9175 44 1 7.1609 0.4724 5.0468 45 1 4.9864 2.2498 2.8150 46 1 6.5750 1.5751 2.3799 47 1 5.0926 0.8885 1.6731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412169707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = -39.578603 kcal Electronic energy + Delta-G solvation = -24441.998430 eV Core-core repulsion = 21238.448058 eV Total energy + Delta-G solvation = -3203.550372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51840 -39.67105 -36.99669 -35.17465 -34.19976 -33.49560 -31.35836 -29.59136 -28.88292 -27.61966 -27.28727 -25.59937 -24.68345 -22.85590 -21.27170 -20.64839 -19.55452 -18.49586 -17.83216 -17.41998 -16.95342 -16.36284 -15.77540 -15.73641 -15.51151 -14.99158 -14.73374 -14.33136 -14.20895 -13.83963 -13.66087 -13.48007 -13.41389 -13.15888 -13.05969 -12.88520 -12.83721 -12.71328 -12.66871 -12.54531 -12.44582 -12.20751 -12.17066 -12.01575 -11.91334 -11.59446 -11.42712 -11.21663 -11.12592 -10.55723 -10.23664 -9.26444 -9.18092 -8.12817 -6.29456 1.40036 1.41777 1.51440 1.96795 2.29408 2.47374 3.08985 3.14548 3.62028 3.70928 3.91190 4.04532 4.10746 4.18413 4.22691 4.41815 4.46525 4.50321 4.64634 4.65146 4.70908 4.72466 4.79712 4.84403 4.86624 4.89572 4.92775 4.98494 5.01096 5.07185 5.09865 5.16593 5.19007 5.30636 5.38925 5.42368 5.48761 5.57051 5.65051 5.73141 6.03440 6.11998 6.18642 6.19416 6.79464 6.96566 7.37317 7.64519 8.91097 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025867 B = 0.004774 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.198736 B = 5863.442614 C = 6166.745087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.266 3.734 3 H 0.005 0.995 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.605 5.605 13 C 0.084 3.916 14 C 0.497 3.503 15 O -0.572 6.572 16 C 0.067 3.933 17 H 0.115 0.885 18 C -0.176 4.176 19 N -0.505 5.505 20 C 0.054 3.946 21 H 0.069 0.931 22 C -0.134 4.134 23 C -0.112 4.112 24 C -0.117 4.117 25 C 0.053 3.947 26 H 0.070 0.930 27 C -0.117 4.117 28 H 0.047 0.953 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.056 0.944 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.164 -8.462 17.834 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 H 0.023 0.977 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.337 5.337 13 C -0.058 4.058 14 C 0.285 3.715 15 O -0.451 6.451 16 C -0.046 4.046 17 H 0.133 0.867 18 C -0.234 4.234 19 N -0.230 5.230 20 C -0.054 4.054 21 H 0.087 0.913 22 C -0.191 4.191 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.054 4.054 26 H 0.087 0.913 27 C -0.175 4.175 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.057 0.943 46 H 0.075 0.925 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.917 -7.236 17.563 20.216 hybrid contribution 0.279 -0.523 -1.533 1.643 sum 7.196 -7.759 16.031 19.209 Atomic orbital electron populations 1.21869 0.97507 0.99955 0.99700 1.18428 0.91314 0.92069 0.81856 0.97671 1.21560 1.31614 1.12826 0.91176 0.92335 1.25736 0.95167 0.95635 1.02002 1.70035 1.37531 1.23941 1.24279 0.85478 0.78831 0.78264 0.78559 1.19211 1.21256 1.19611 1.48175 1.49759 1.13156 1.22633 1.21857 1.01272 0.80990 1.01709 1.21125 0.78418 0.87023 0.84918 1.90626 1.58013 1.19050 1.77400 1.21615 0.98925 0.91755 0.92283 0.86727 1.22420 0.99985 0.98061 1.02918 1.65221 1.13328 1.42639 1.01851 1.22802 0.96825 0.98206 0.87557 0.91299 1.21721 0.95825 1.01585 0.99987 1.22335 0.95199 1.00407 0.97071 1.22333 0.98906 1.01082 0.93141 1.22809 0.88371 0.98544 0.95712 0.91256 1.21632 0.99124 0.99292 0.97457 0.93389 0.96434 0.91570 0.92762 0.92580 0.89228 0.91410 0.89729 0.93437 0.89118 0.93346 0.89894 0.93476 0.91175 0.88939 0.92080 0.89537 0.94260 0.92537 0.95351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 8.95 71.98 0.64 -5.91 16 2 C 0.27 14.18 2.63 44.24 0.12 14.30 16 3 H 0.01 0.34 6.90 -2.38 -0.02 0.33 16 4 C -0.53 -29.48 8.37 25.60 0.21 -29.27 16 5 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -54.08 11.32 21.45 0.24 -53.84 16 8 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 N -0.61 -26.09 2.75 -826.81 -2.28 -28.36 16 13 C 0.08 2.67 8.15 127.77 1.04 3.72 16 14 C 0.50 21.07 6.45 87.66 0.57 21.63 16 15 O -0.57 -29.59 11.93 -3.05 -0.04 -29.63 16 16 C 0.07 1.98 1.82 44.17 0.08 2.06 16 17 H 0.12 2.92 6.03 -2.39 -0.01 2.91 16 18 C -0.18 -4.26 7.37 71.98 0.53 -3.73 16 19 N -0.51 -14.69 4.38 -811.57 -3.55 -18.24 16 20 C 0.05 1.09 2.71 45.06 0.12 1.21 16 21 H 0.07 1.16 6.83 -2.38 -0.02 1.15 16 22 C -0.13 -2.54 9.36 71.98 0.67 -1.86 16 23 C -0.11 -1.96 6.55 31.49 0.21 -1.75 16 24 C -0.12 -2.44 6.55 31.49 0.21 -2.24 16 25 C 0.05 1.48 2.34 45.06 0.11 1.59 16 26 H 0.07 1.77 5.17 -2.39 -0.01 1.76 16 27 C -0.12 -4.19 7.68 71.98 0.55 -3.63 16 28 H 0.05 2.15 6.66 -2.39 -0.02 2.13 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.06 1.69 7.19 -2.38 -0.02 1.67 16 33 H 0.09 2.11 5.99 -2.39 -0.01 2.09 16 34 H 0.07 2.19 6.43 -2.39 -0.02 2.18 16 35 H 0.08 1.88 5.32 -2.39 -0.01 1.87 16 36 H 0.05 1.37 6.69 -2.39 -0.02 1.35 16 37 H 0.09 1.64 6.69 -2.38 -0.02 1.63 16 38 H 0.05 0.96 7.27 -2.39 -0.02 0.94 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 41 H 0.07 1.26 7.82 -2.39 -0.02 1.24 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.41 7.86 -2.38 -0.02 1.39 16 44 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 1.58 7.73 -2.39 -0.02 1.57 16 46 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.03 1.21 5.99 -2.39 -0.01 1.20 16 Total: -1.00 -71.03 342.87 2.86 -68.17 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.94 Total: 18.82 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 5.51 Total: -2.67 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -5.58 Total: -100.44 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.04 Total: -29.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -71.03 2.86 -68.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.592 kcal (2) G-P(sol) polarization free energy of solvation -71.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds