Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46678 * 2 1 4 4 C 1.50702 * 109.46945 * 240.00118 * 2 1 3 5 5 H 1.07995 * 119.99829 * 244.51850 * 4 2 1 6 6 C 1.37874 * 120.00196 * 64.52395 * 4 2 1 7 7 N 1.31517 * 120.00166 * 6.85316 * 6 4 2 8 8 Si 1.86796 * 120.00251 * 186.85823 * 6 4 2 9 9 H 1.48501 * 109.47461 * 94.96557 * 8 6 4 10 10 H 1.48498 * 109.47228 * 214.96961 * 8 6 4 11 11 H 1.48505 * 109.46681 * 334.96932 * 8 6 4 12 12 N 1.46497 * 109.47330 * 119.99823 * 2 1 3 13 13 C 1.46494 * 119.99816 * 60.00039 * 12 2 1 14 14 C 1.34772 * 120.00065 * 240.00118 * 12 2 1 15 15 O 1.21287 * 120.00430 * 0.02562 * 14 12 2 16 16 C 1.50700 * 120.00278 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.47227 * 37.80485 * 16 14 12 18 18 C 1.53006 * 109.46666 * 277.81519 * 16 14 12 19 19 N 1.46899 * 109.47710 * 157.81435 * 16 14 12 20 20 C 1.47442 * 110.99646 * 290.62202 * 19 16 14 21 21 H 1.09004 * 109.88862 * 117.33609 * 20 19 16 22 22 C 1.52997 * 109.88915 * 356.14244 * 20 19 16 23 23 C 1.54320 * 107.22768 * 236.73973 * 20 19 16 24 24 C 1.55139 * 103.02154 * 337.71482 * 23 20 19 25 25 C 1.47836 * 111.00263 * 169.77301 * 19 16 14 26 26 H 1.09003 * 110.37446 * 27.53414 * 25 19 16 27 27 C 1.52997 * 110.37974 * 265.19294 * 25 19 16 28 28 H 1.08998 * 109.47005 * 182.56705 * 1 2 3 29 29 H 1.09001 * 109.46825 * 302.56401 * 1 2 3 30 30 H 1.08997 * 109.47196 * 62.56499 * 1 2 3 31 31 H 0.96996 * 120.00546 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47528 * 269.99692 * 13 12 2 33 33 H 1.08997 * 109.47669 * 30.00337 * 13 12 2 34 34 H 1.09005 * 109.46974 * 149.99916 * 13 12 2 35 35 H 1.08994 * 109.47735 * 55.02759 * 18 16 14 36 36 H 1.08998 * 109.46916 * 175.02982 * 18 16 14 37 37 H 1.09001 * 109.46921 * 295.02820 * 18 16 14 38 38 H 1.08995 * 109.47307 * 307.72965 * 22 20 19 39 39 H 1.09000 * 109.46649 * 67.73150 * 22 20 19 40 40 H 1.09002 * 109.46743 * 187.72909 * 22 20 19 41 41 H 1.09007 * 110.70141 * 219.33204 * 23 20 19 42 42 H 1.08994 * 110.70716 * 96.10544 * 23 20 19 43 43 H 1.09006 * 110.99123 * 153.74979 * 24 23 20 44 44 H 1.09000 * 110.98898 * 277.56293 * 24 23 20 45 45 H 1.09000 * 109.46785 * 300.37582 * 27 25 19 46 46 H 1.09000 * 109.46869 * 60.36878 * 27 25 19 47 47 H 1.09000 * 109.47370 * 180.36840 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5916 -1.6291 -1.1331 6 6 1.7779 -0.1875 -2.4806 7 7 1.2165 0.9962 -2.5965 8 14 2.2304 -1.1602 -4.0098 9 1 1.0470 -1.9255 -4.4779 10 1 2.6705 -0.2270 -5.0778 11 1 3.3334 -2.1014 -3.6892 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0858 1.1258 1.8916 16 6 3.2961 -0.7460 3.3134 17 1 3.5491 -1.7756 3.0605 18 6 2.2069 -0.7379 4.3880 19 7 4.4908 -0.0589 3.8219 20 6 5.6330 -0.2385 2.9071 21 1 5.9485 0.7278 2.5136 22 6 5.2384 -1.1683 1.7580 23 6 6.7784 -0.8716 3.7249 24 6 6.4168 -0.4917 5.1850 25 6 4.8701 -0.5724 5.1553 26 1 4.5417 -1.6053 5.2717 27 6 4.2698 0.3057 6.2550 28 1 -0.3633 -1.0266 0.0460 29 1 -0.3633 0.5531 0.8661 30 1 -0.3633 0.4735 -0.9121 31 1 1.0371 1.3640 -3.4759 32 1 0.7377 -2.1443 1.9994 33 1 1.5296 -2.5968 0.4709 34 1 2.4630 -2.5818 1.9863 35 1 1.2920 -1.1686 3.9814 36 1 2.5366 -1.3268 5.2439 37 1 2.0163 0.2877 4.7044 38 1 4.8147 -2.0872 2.1632 39 1 4.4987 -0.6739 1.1283 40 1 6.1207 -1.4062 1.1637 41 1 7.7385 -0.4405 3.4411 42 1 6.7888 -1.9542 3.5996 43 1 6.8320 -1.2119 5.8901 44 1 6.7506 0.5190 5.4196 45 1 4.6350 1.3267 6.1445 46 1 3.1829 0.2978 6.1734 47 1 4.5637 -0.0819 7.2305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412169708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = -16.589439 kcal Electronic energy + Delta-G solvation = -24626.369895 eV Core-core repulsion = 21423.816407 eV Total energy + Delta-G solvation = -3202.553487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46348 -38.24788 -35.17474 -33.56477 -32.83421 -32.45497 -29.58915 -28.52723 -27.89565 -26.07822 -25.16876 -24.47459 -23.32614 -21.10958 -20.72908 -19.13617 -17.91549 -16.79741 -16.38739 -16.13403 -15.57934 -15.09405 -14.75547 -14.20423 -13.70311 -13.58416 -13.30585 -12.97660 -12.89401 -12.59739 -12.46532 -12.12784 -12.00507 -11.77266 -11.72651 -11.66541 -11.48341 -11.28121 -11.11546 -11.01019 -10.92771 -10.78741 -10.69695 -10.62090 -10.46414 -10.43263 -10.22392 -10.15651 -9.16895 -8.74759 -8.38504 -7.92539 -7.50650 -6.05829 -4.11542 3.26859 3.34276 3.36089 3.50713 3.76377 4.23503 4.42723 4.63752 4.70860 4.93746 5.14449 5.15392 5.24237 5.27471 5.35219 5.38152 5.45198 5.59658 5.67818 5.71642 5.74464 5.77507 5.85460 5.87256 5.89464 5.93770 6.05338 6.09407 6.11354 6.26470 6.37084 6.42260 6.52565 6.57077 6.73360 6.81798 7.04975 7.20609 7.24557 7.46560 7.61438 7.74833 7.99909 8.21740 8.61352 8.89457 9.21335 9.54422 11.01210 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.005143 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.619443 B = 5442.850604 C = 5989.762763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.258 3.742 3 H 0.068 0.932 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.598 5.598 13 C 0.083 3.917 14 C 0.516 3.484 15 O -0.533 6.533 16 C 0.051 3.949 17 H 0.068 0.932 18 C -0.145 4.145 19 N -0.497 5.497 20 C 0.076 3.924 21 H 0.089 0.911 22 C -0.182 4.182 23 C -0.139 4.139 24 C -0.124 4.124 25 C 0.069 3.931 26 H 0.051 0.949 27 C -0.142 4.142 28 H 0.030 0.970 29 H 0.014 0.986 30 H 0.078 0.922 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 -7.237 15.085 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.158 3.842 3 H 0.085 0.915 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.331 5.331 13 C -0.062 4.062 14 C 0.303 3.697 15 O -0.409 6.409 16 C -0.060 4.060 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.222 5.222 20 C -0.032 4.032 21 H 0.107 0.893 22 C -0.239 4.239 23 C -0.177 4.177 24 C -0.162 4.162 25 C -0.040 4.040 26 H 0.069 0.931 27 C -0.200 4.200 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.859 -5.939 14.846 17.029 hybrid contribution 0.329 -1.562 -1.100 1.939 sum 6.188 -7.501 13.746 16.838 Atomic orbital electron populations 1.22007 0.98699 0.98805 1.00411 1.18889 0.90387 0.94946 0.79973 0.91456 1.21288 1.35543 1.09205 0.90397 0.92328 1.24892 0.95193 0.94671 0.98888 1.69956 1.42898 1.15525 1.23868 0.86556 0.78574 0.79876 0.82831 1.20676 1.21178 1.19962 1.48219 1.49883 1.11340 1.23640 1.21628 0.98556 0.83822 1.02150 1.19971 0.78988 0.87231 0.83543 1.90664 1.57451 1.16756 1.76048 1.21960 0.92243 0.96778 0.95065 0.91487 1.21973 0.97559 1.03172 0.97543 1.63482 1.02682 1.54791 1.01276 1.22350 0.89537 0.99183 0.92141 0.89340 1.22579 1.02968 0.99400 0.98986 1.22906 0.99083 1.00523 0.95225 1.22734 0.94941 1.02042 0.96479 1.22542 0.94457 0.96822 0.90130 0.93088 1.21931 1.01723 1.00247 0.96080 0.95117 0.96705 0.90339 0.92744 0.94021 0.90247 0.93130 0.91749 0.91919 0.91016 0.92760 0.89830 0.92160 0.90927 0.91614 0.91230 0.90591 0.91962 0.91745 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.09 37.16 0.34 -3.01 16 2 C 0.26 6.60 2.51 -69.08 -0.17 6.42 16 3 H 0.07 2.03 6.88 -51.93 -0.36 1.68 16 4 C -0.53 -14.10 8.01 -34.44 -0.28 -14.37 16 5 H 0.06 1.54 7.18 -52.49 -0.38 1.16 16 6 C 0.07 1.82 5.22 -17.82 -0.09 1.72 16 7 N -0.88 -25.39 11.97 55.43 0.66 -24.73 16 8 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.60 -12.68 2.64 -175.26 -0.46 -13.14 16 13 C 0.08 1.38 8.63 59.84 0.52 1.90 16 14 C 0.52 10.82 3.78 -10.99 -0.04 10.78 16 15 O -0.53 -13.58 15.57 5.55 0.09 -13.49 16 16 C 0.05 0.82 1.18 -68.86 -0.08 0.74 16 17 H 0.07 1.00 3.76 -51.93 -0.20 0.80 16 18 C -0.14 -1.95 7.56 37.16 0.28 -1.67 16 19 N -0.50 -7.72 4.33 -209.05 -0.91 -8.62 16 20 C 0.08 1.16 3.59 -66.73 -0.24 0.92 16 21 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 22 C -0.18 -2.95 7.74 37.16 0.29 -2.66 16 23 C -0.14 -1.60 6.47 -24.91 -0.16 -1.76 16 24 C -0.12 -1.30 6.49 -24.59 -0.16 -1.46 16 25 C 0.07 0.82 2.38 -66.19 -0.16 0.66 16 26 H 0.05 0.58 7.05 -51.93 -0.37 0.21 16 27 C -0.14 -1.55 9.15 37.16 0.34 -1.21 16 28 H 0.03 0.66 7.59 -51.93 -0.39 0.27 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 2.04 6.66 -51.93 -0.35 1.70 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.04 0.62 7.80 -51.93 -0.40 0.21 16 33 H 0.08 1.41 6.94 -51.93 -0.36 1.05 16 34 H 0.05 0.71 5.90 -51.93 -0.31 0.41 16 35 H 0.06 0.84 7.24 -51.93 -0.38 0.46 16 36 H 0.06 0.68 6.07 -51.93 -0.32 0.37 16 37 H 0.07 1.05 7.13 -51.93 -0.37 0.68 16 38 H 0.05 0.80 6.06 -51.93 -0.31 0.48 16 39 H 0.08 1.72 5.21 -51.93 -0.27 1.45 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 45 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 46 H 0.06 0.72 5.12 -51.93 -0.27 0.45 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -30.98 344.94 -8.00 -38.98 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.94 Total: 2.82 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 0.38 Total: -3.00 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.70 Total: -46.50 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.98 -8.00 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.388 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds