Wall clock time and date at job start Tue Mar 31 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46678 * 2 1 4 4 C 1.50702 * 109.46945 * 240.00118 * 2 1 3 5 5 H 1.07995 * 119.99829 * 244.51850 * 4 2 1 6 6 C 1.37874 * 120.00196 * 64.52395 * 4 2 1 7 7 N 1.31517 * 120.00166 * 6.85316 * 6 4 2 8 8 Si 1.86796 * 120.00251 * 186.85823 * 6 4 2 9 9 H 1.48501 * 109.47461 * 94.96557 * 8 6 4 10 10 H 1.48498 * 109.47228 * 214.96961 * 8 6 4 11 11 H 1.48505 * 109.46681 * 334.96932 * 8 6 4 12 12 N 1.46497 * 109.47330 * 119.99823 * 2 1 3 13 13 C 1.46494 * 119.99816 * 60.00039 * 12 2 1 14 14 C 1.34772 * 120.00065 * 240.00118 * 12 2 1 15 15 O 1.21287 * 120.00430 * 0.02562 * 14 12 2 16 16 C 1.50700 * 120.00278 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.47227 * 37.80485 * 16 14 12 18 18 C 1.53006 * 109.46666 * 277.81519 * 16 14 12 19 19 N 1.46899 * 109.47710 * 157.81435 * 16 14 12 20 20 C 1.47442 * 110.99646 * 290.62202 * 19 16 14 21 21 H 1.09004 * 109.88862 * 117.33609 * 20 19 16 22 22 C 1.52997 * 109.88915 * 356.14244 * 20 19 16 23 23 C 1.54320 * 107.22768 * 236.73973 * 20 19 16 24 24 C 1.55139 * 103.02154 * 337.71482 * 23 20 19 25 25 C 1.47836 * 111.00263 * 169.77301 * 19 16 14 26 26 H 1.09003 * 110.37446 * 27.53414 * 25 19 16 27 27 C 1.52997 * 110.37974 * 265.19294 * 25 19 16 28 28 H 1.08998 * 109.47005 * 182.56705 * 1 2 3 29 29 H 1.09001 * 109.46825 * 302.56401 * 1 2 3 30 30 H 1.08997 * 109.47196 * 62.56499 * 1 2 3 31 31 H 0.96996 * 120.00546 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47528 * 269.99692 * 13 12 2 33 33 H 1.08997 * 109.47669 * 30.00337 * 13 12 2 34 34 H 1.09005 * 109.46974 * 149.99916 * 13 12 2 35 35 H 1.08994 * 109.47735 * 55.02759 * 18 16 14 36 36 H 1.08998 * 109.46916 * 175.02982 * 18 16 14 37 37 H 1.09001 * 109.46921 * 295.02820 * 18 16 14 38 38 H 1.08995 * 109.47307 * 307.72965 * 22 20 19 39 39 H 1.09000 * 109.46649 * 67.73150 * 22 20 19 40 40 H 1.09002 * 109.46743 * 187.72909 * 22 20 19 41 41 H 1.09007 * 110.70141 * 219.33204 * 23 20 19 42 42 H 1.08994 * 110.70716 * 96.10544 * 23 20 19 43 43 H 1.09006 * 110.99123 * 153.74979 * 24 23 20 44 44 H 1.09000 * 110.98898 * 277.56293 * 24 23 20 45 45 H 1.09000 * 109.46785 * 300.37582 * 27 25 19 46 46 H 1.09000 * 109.46869 * 60.36878 * 27 25 19 47 47 H 1.09000 * 109.47370 * 180.36840 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5916 -1.6291 -1.1331 6 6 1.7779 -0.1875 -2.4806 7 7 1.2165 0.9962 -2.5965 8 14 2.2304 -1.1602 -4.0098 9 1 1.0470 -1.9255 -4.4779 10 1 2.6705 -0.2270 -5.0778 11 1 3.3334 -2.1014 -3.6892 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0858 1.1258 1.8916 16 6 3.2961 -0.7460 3.3134 17 1 3.5491 -1.7756 3.0605 18 6 2.2069 -0.7379 4.3880 19 7 4.4908 -0.0589 3.8219 20 6 5.6330 -0.2385 2.9071 21 1 5.9485 0.7278 2.5136 22 6 5.2384 -1.1683 1.7580 23 6 6.7784 -0.8716 3.7249 24 6 6.4168 -0.4917 5.1850 25 6 4.8701 -0.5724 5.1553 26 1 4.5417 -1.6053 5.2717 27 6 4.2698 0.3057 6.2550 28 1 -0.3633 -1.0266 0.0460 29 1 -0.3633 0.5531 0.8661 30 1 -0.3633 0.4735 -0.9121 31 1 1.0371 1.3640 -3.4759 32 1 0.7377 -2.1443 1.9994 33 1 1.5296 -2.5968 0.4709 34 1 2.4630 -2.5818 1.9863 35 1 1.2920 -1.1686 3.9814 36 1 2.5366 -1.3268 5.2439 37 1 2.0163 0.2877 4.7044 38 1 4.8147 -2.0872 2.1632 39 1 4.4987 -0.6739 1.1283 40 1 6.1207 -1.4062 1.1637 41 1 7.7385 -0.4405 3.4411 42 1 6.7888 -1.9542 3.5996 43 1 6.8320 -1.2119 5.8901 44 1 6.7506 0.5190 5.4196 45 1 4.6350 1.3267 6.1445 46 1 3.1829 0.2978 6.1734 47 1 4.5637 -0.0819 7.2305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412169708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:04 Heat of formation + Delta-G solvation = -37.094131 kcal Electronic energy + Delta-G solvation = -24627.259045 eV Core-core repulsion = 21423.816407 eV Total energy + Delta-G solvation = -3203.442637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77891 -39.68082 -37.00194 -35.06100 -34.23020 -33.79531 -31.38110 -29.64262 -29.01031 -27.57293 -27.26788 -25.68495 -24.51969 -22.68905 -21.78870 -20.45287 -19.41463 -18.51148 -18.12396 -17.31792 -16.88303 -16.80808 -16.26683 -15.91871 -15.03022 -14.75419 -14.51478 -14.42566 -14.12471 -13.99211 -13.77934 -13.60803 -13.40484 -13.08723 -13.06225 -12.93881 -12.88719 -12.75822 -12.70385 -12.60089 -12.29572 -12.25648 -12.19152 -12.09757 -11.95314 -11.61768 -11.55019 -11.37709 -11.19855 -10.55630 -10.34652 -9.26168 -9.09011 -8.15262 -6.29441 1.40177 1.40974 1.51338 1.92423 2.28801 2.45990 3.01306 3.13786 3.60517 3.74220 3.84634 3.90521 3.97157 4.18232 4.24527 4.38585 4.41534 4.48162 4.54483 4.64992 4.67454 4.72828 4.77712 4.78689 4.86041 4.88261 4.92906 4.96876 4.99529 5.04132 5.05209 5.12141 5.16938 5.21542 5.34506 5.41267 5.48968 5.52735 5.56794 5.69378 6.00492 6.11172 6.15908 6.24748 6.80135 6.92610 7.36402 7.61301 8.91328 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.005143 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.619443 B = 5442.850604 C = 5989.762763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.263 3.737 3 H 0.006 0.994 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.289 1.289 11 H -0.267 1.267 12 N -0.603 5.603 13 C 0.078 3.922 14 C 0.511 3.489 15 O -0.593 6.593 16 C 0.065 3.935 17 H 0.087 0.913 18 C -0.140 4.140 19 N -0.524 5.524 20 C 0.072 3.928 21 H 0.049 0.951 22 C -0.174 4.174 23 C -0.129 4.129 24 C -0.117 4.117 25 C 0.066 3.934 26 H 0.071 0.929 27 C -0.140 4.140 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.051 0.949 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -10.739 17.138 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.161 3.839 3 H 0.024 0.976 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.193 1.193 10 H -0.215 1.215 11 H -0.191 1.191 12 N -0.335 5.335 13 C -0.064 4.064 14 C 0.300 3.700 15 O -0.474 6.474 16 C -0.046 4.046 17 H 0.104 0.896 18 C -0.197 4.197 19 N -0.250 5.250 20 C -0.037 4.037 21 H 0.067 0.933 22 C -0.232 4.232 23 C -0.167 4.167 24 C -0.155 4.155 25 C -0.041 4.041 26 H 0.089 0.911 27 C -0.198 4.198 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.592 -9.490 16.932 20.499 hybrid contribution 0.120 -0.401 -1.715 1.766 sum 6.711 -9.892 15.217 19.350 Atomic orbital electron populations 1.21793 0.97431 0.99923 0.99279 1.18452 0.91251 0.92313 0.81896 0.97610 1.21546 1.35310 1.09157 0.91097 0.91968 1.25760 0.95182 0.95481 1.02139 1.70111 1.44197 1.17186 1.24499 0.85480 0.78757 0.78374 0.78628 1.19318 1.21521 1.19136 1.48190 1.49845 1.13084 1.22379 1.21883 1.00972 0.80974 1.02574 1.20964 0.77722 0.86724 0.84613 1.90626 1.59446 1.19736 1.77612 1.21849 0.93210 0.96438 0.93134 0.89621 1.21998 0.96996 1.02922 0.97807 1.63360 1.02563 1.56151 1.02922 1.22263 0.91285 0.97490 0.92617 0.93288 1.22478 1.02037 0.99817 0.98820 1.22834 0.97563 1.01146 0.95149 1.22746 0.93859 1.02667 0.96225 1.22716 0.95595 0.97784 0.88028 0.91074 1.21930 1.01333 0.99302 0.97215 0.92785 0.96097 0.93020 0.92802 0.91444 0.91174 0.89964 0.91065 0.88341 0.92750 0.90647 0.94688 0.91296 0.90216 0.89897 0.88113 0.91231 0.93786 0.92206 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 9.09 71.98 0.65 -5.47 16 2 C 0.26 14.03 2.51 44.25 0.11 14.14 16 3 H 0.01 0.38 6.88 -2.38 -0.02 0.37 16 4 C -0.53 -29.27 8.01 25.60 0.21 -29.06 16 5 H 0.06 3.29 7.18 -2.91 -0.02 3.27 16 6 C 0.01 0.77 5.22 84.65 0.44 1.21 16 7 N -0.92 -55.02 11.97 21.45 0.26 -54.76 16 8 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 12 N -0.60 -25.92 2.64 -826.80 -2.18 -28.10 16 13 C 0.08 2.46 8.63 127.77 1.10 3.56 16 14 C 0.51 21.98 3.78 87.66 0.33 22.31 16 15 O -0.59 -32.44 15.57 -3.05 -0.05 -32.49 16 16 C 0.07 1.99 1.18 44.17 0.05 2.04 16 17 H 0.09 2.26 3.76 -2.39 -0.01 2.25 16 18 C -0.14 -3.40 7.56 71.98 0.54 -2.86 16 19 N -0.52 -15.81 4.33 -815.30 -3.53 -19.35 16 20 C 0.07 2.18 3.59 45.26 0.16 2.34 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 C -0.17 -5.57 7.74 71.98 0.56 -5.02 16 23 C -0.13 -2.64 6.47 31.77 0.21 -2.43 16 24 C -0.12 -2.06 6.49 31.98 0.21 -1.85 16 25 C 0.07 1.36 2.38 45.39 0.11 1.47 16 26 H 0.07 1.22 7.05 -2.39 -0.02 1.21 16 27 C -0.14 -2.68 9.15 71.98 0.66 -2.02 16 28 H 0.05 2.32 7.59 -2.39 -0.02 2.30 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 2.78 6.66 -2.39 -0.02 2.77 16 31 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 33 H 0.07 2.35 6.94 -2.39 -0.02 2.33 16 34 H 0.08 2.04 5.90 -2.38 -0.01 2.02 16 35 H 0.07 1.63 7.24 -2.39 -0.02 1.61 16 36 H 0.10 1.70 6.07 -2.39 -0.01 1.69 16 37 H 0.05 1.53 7.13 -2.39 -0.02 1.51 16 38 H 0.07 2.03 6.06 -2.39 -0.01 2.01 16 39 H 0.03 1.47 5.21 -2.39 -0.01 1.46 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.08 1.45 7.85 -2.39 -0.02 1.43 16 43 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.07 1.32 8.05 -2.39 -0.02 1.30 16 45 H 0.04 0.99 8.13 -2.39 -0.02 0.97 16 46 H 0.06 1.19 5.12 -2.39 -0.01 1.18 16 47 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -73.69 344.94 2.81 -70.88 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.94 Total: 19.82 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.34 Total: -1.63 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -5.46 Total: -102.20 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -73.69 2.81 -70.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.787 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds