Wall clock time and date at job start Tue Mar 31 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46732 * 2 1 4 4 C 1.50696 * 109.46965 * 239.99757 * 2 1 3 5 5 H 1.07997 * 120.00199 * 240.00076 * 4 2 1 6 6 C 1.37882 * 119.99736 * 60.00284 * 4 2 1 7 7 N 1.31506 * 120.00236 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99811 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47034 * 270.00148 * 8 6 4 10 10 H 1.48502 * 109.47203 * 29.99813 * 8 6 4 11 11 H 1.48500 * 109.47124 * 150.00215 * 8 6 4 12 12 N 1.46495 * 109.46861 * 120.00072 * 2 1 3 13 13 C 1.46497 * 120.00624 * 59.99768 * 12 2 1 14 14 C 1.34777 * 119.99723 * 239.99980 * 12 2 1 15 15 O 1.21284 * 120.00512 * 354.52633 * 14 12 2 16 16 C 1.50703 * 120.00096 * 174.52792 * 14 12 2 17 17 H 1.08999 * 109.47416 * 45.21103 * 16 14 12 18 18 C 1.53003 * 109.46824 * 285.21207 * 16 14 12 19 19 N 1.46901 * 109.47384 * 165.21722 * 16 14 12 20 20 C 1.48557 * 111.00255 * 86.20742 * 19 16 14 21 21 H 1.09001 * 110.41189 * 40.26017 * 20 19 16 22 22 C 1.52997 * 110.41274 * 277.94119 * 20 19 16 23 23 C 1.54375 * 104.59578 * 159.04237 * 20 19 16 24 24 C 1.54261 * 105.06114 * 336.14315 * 23 20 19 25 25 C 1.48560 * 110.99939 * 201.62609 * 19 16 14 26 26 H 1.08997 * 110.41192 * 319.73973 * 25 19 16 27 27 C 1.53005 * 110.41030 * 82.18020 * 25 19 16 28 28 H 1.08994 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46956 * 300.00183 * 1 2 3 30 30 H 1.09006 * 109.47092 * 59.99867 * 1 2 3 31 31 H 0.97003 * 120.00516 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.46751 * 94.96926 * 13 12 2 33 33 H 1.08994 * 109.47648 * 214.97363 * 13 12 2 34 34 H 1.09000 * 109.46896 * 334.97875 * 13 12 2 35 35 H 1.09009 * 109.46984 * 67.70390 * 18 16 14 36 36 H 1.09000 * 109.46958 * 187.69184 * 18 16 14 37 37 H 1.08997 * 109.47606 * 307.70019 * 18 16 14 38 38 H 1.08999 * 109.47928 * 70.85994 * 22 20 19 39 39 H 1.08997 * 109.47397 * 190.86720 * 22 20 19 40 40 H 1.09002 * 109.46897 * 310.85963 * 22 20 19 41 41 H 1.08997 * 110.32415 * 95.04515 * 23 20 19 42 42 H 1.09007 * 110.32356 * 217.25239 * 23 20 19 43 43 H 1.09001 * 110.31875 * 118.89429 * 24 23 20 44 44 H 1.08998 * 110.33125 * 241.10631 * 24 23 20 45 45 H 1.09000 * 109.47024 * 64.85750 * 27 25 19 46 46 H 1.09000 * 109.46795 * 184.85851 * 27 25 19 47 47 H 1.08997 * 109.46808 * 304.85941 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.6305 -0.5441 -4.4118 10 1 2.4880 -2.5654 -3.7122 11 1 1.3444 -0.9490 -5.1123 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0833 15 8 3.1682 1.0927 1.8440 16 6 3.1935 -0.7051 3.3727 17 1 3.5170 -1.7255 3.1671 18 6 1.9974 -0.7317 4.3264 19 7 4.2962 0.0430 3.9911 20 6 3.7803 1.1524 4.8338 21 1 2.8995 0.8300 5.3891 22 6 3.4481 2.3697 3.9685 23 6 4.9383 1.4765 5.8018 24 6 5.7766 0.1834 5.8713 25 6 5.0546 -0.8132 4.9392 26 1 4.3732 -1.4432 5.5110 27 6 6.0721 -1.6723 4.1857 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7088 1.1613 -3.4844 32 1 2.4593 -2.7358 1.0495 33 1 1.5372 -2.2638 2.4970 34 1 0.7334 -2.3234 0.9101 35 1 1.2313 -1.3983 3.9299 36 1 2.3200 -1.0899 5.3040 37 1 1.5885 0.2739 4.4246 38 1 2.5619 2.1592 3.3699 39 1 3.2574 3.2301 4.6098 40 1 4.2886 2.5871 3.3093 41 1 5.5398 2.2972 5.4111 42 1 4.5481 1.7281 6.7881 43 1 6.7896 0.3695 5.5146 44 1 5.7980 -0.1997 6.8915 45 1 6.8213 -1.0282 3.7254 46 1 6.5583 -2.3547 4.8827 47 1 5.5613 -2.2458 3.4122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412169709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:07 Heat of formation + Delta-G solvation = -18.763691 kcal Electronic energy + Delta-G solvation = -24398.353006 eV Core-core repulsion = 21195.705236 eV Total energy + Delta-G solvation = -3202.647770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24065 -38.25671 -35.20798 -33.66478 -32.64739 -32.35630 -29.57693 -28.48158 -27.81726 -26.09171 -25.17068 -24.27451 -23.70137 -21.17883 -20.29689 -19.32913 -18.05380 -16.53097 -16.45089 -16.08376 -15.24345 -14.86642 -14.63174 -14.35942 -14.13506 -13.75323 -13.29207 -13.03737 -12.66629 -12.53476 -12.47312 -12.33682 -11.92111 -11.81811 -11.69105 -11.49010 -11.41001 -11.36458 -11.08736 -10.98607 -10.84705 -10.80192 -10.72190 -10.59853 -10.31961 -10.23255 -10.16626 -10.08329 -9.09876 -8.70028 -8.37714 -8.10765 -7.43632 -6.02099 -4.09246 3.30487 3.36759 3.38067 3.48658 3.78654 4.28085 4.46136 4.58758 4.78621 4.98600 5.06456 5.20724 5.22167 5.24329 5.29537 5.36779 5.48180 5.59435 5.60376 5.70496 5.75468 5.78259 5.85725 5.93641 5.95532 6.04142 6.09681 6.15473 6.21266 6.27767 6.29381 6.36401 6.56441 6.78904 6.84977 6.94789 7.08799 7.16035 7.23893 7.55124 7.60809 7.78326 8.08168 8.27059 8.64861 8.91444 9.23188 9.57517 11.03098 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024383 B = 0.004704 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.051071 B = 5950.696911 C = 6151.630080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.261 3.739 3 H 0.062 0.938 4 C -0.521 4.521 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.597 5.597 13 C 0.083 3.917 14 C 0.511 3.489 15 O -0.524 6.524 16 C 0.052 3.948 17 H 0.094 0.906 18 C -0.178 4.178 19 N -0.478 5.478 20 C 0.054 3.946 21 H 0.058 0.942 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.118 4.118 25 C 0.055 3.945 26 H 0.049 0.951 27 C -0.136 4.136 28 H 0.029 0.971 29 H 0.009 0.991 30 H 0.093 0.907 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 -4.636 17.094 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.080 0.920 4 C -0.560 4.560 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.329 5.329 13 C -0.061 4.061 14 C 0.297 3.703 15 O -0.400 6.400 16 C -0.060 4.060 17 H 0.112 0.888 18 C -0.236 4.236 19 N -0.202 5.202 20 C -0.053 4.053 21 H 0.076 0.924 22 C -0.184 4.184 23 C -0.159 4.159 24 C -0.156 4.156 25 C -0.053 4.053 26 H 0.067 0.933 27 C -0.194 4.194 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.602 -3.718 16.344 17.382 hybrid contribution -0.293 -1.053 -0.318 1.138 sum 4.309 -4.771 16.026 17.268 Atomic orbital electron populations 1.22103 0.98466 0.99229 1.00693 1.18872 0.90514 0.94482 0.80102 0.91981 1.21329 1.31455 1.12839 0.90356 0.92420 1.24884 0.95002 0.95011 0.98910 1.69872 1.36551 1.22744 1.23622 0.86520 0.78652 0.79867 0.82478 1.20643 1.19990 1.21200 1.48174 1.49732 1.11363 1.23679 1.21639 1.01371 0.83647 0.99429 1.20047 0.78964 0.86683 0.84611 1.90637 1.53627 1.18780 1.76967 1.21782 0.91489 0.98329 0.94412 0.88833 1.22391 0.98773 1.03282 0.99175 1.65302 1.20318 1.07373 1.27202 1.22819 0.96057 0.93190 0.93272 0.92429 1.21822 1.04213 0.94020 0.98356 1.22363 0.96966 0.97989 0.98574 1.22334 0.99688 0.95091 0.98480 1.22654 0.95467 0.94392 0.92805 0.93295 1.21729 0.98749 0.99053 0.99856 0.95218 0.97145 0.88881 0.92791 0.93716 0.93037 0.90775 0.91067 0.92121 0.91273 0.91041 0.94511 0.91305 0.90969 0.91890 0.90986 0.91809 0.91782 0.92642 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.96 37.16 0.33 -3.17 16 2 C 0.26 6.69 2.62 -69.08 -0.18 6.51 16 3 H 0.06 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.52 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.60 -12.76 2.75 -175.26 -0.48 -13.24 16 13 C 0.08 1.41 9.10 59.85 0.54 1.96 16 14 C 0.51 10.58 6.62 -10.98 -0.07 10.51 16 15 O -0.52 -12.66 11.54 5.55 0.06 -12.59 16 16 C 0.05 0.82 1.78 -68.86 -0.12 0.70 16 17 H 0.09 1.37 6.20 -51.93 -0.32 1.04 16 18 C -0.18 -2.29 7.47 37.16 0.28 -2.01 16 19 N -0.48 -7.25 4.43 -207.87 -0.92 -8.17 16 20 C 0.05 0.76 2.29 -66.08 -0.15 0.61 16 21 H 0.06 0.76 5.13 -51.93 -0.27 0.49 16 22 C -0.13 -2.07 7.62 37.16 0.28 -1.79 16 23 C -0.12 -1.38 6.55 -25.35 -0.17 -1.55 16 24 C -0.12 -1.24 6.55 -25.35 -0.17 -1.40 16 25 C 0.06 0.66 2.70 -66.07 -0.18 0.48 16 26 H 0.05 0.54 6.98 -51.93 -0.36 0.18 16 27 C -0.14 -1.55 9.44 37.16 0.35 -1.20 16 28 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.05 0.70 4.66 -51.93 -0.24 0.45 16 34 H 0.07 1.28 6.44 -51.93 -0.33 0.95 16 35 H 0.07 0.86 6.03 -51.92 -0.31 0.55 16 36 H 0.06 0.66 6.80 -51.93 -0.35 0.30 16 37 H 0.07 0.96 6.53 -51.93 -0.34 0.63 16 38 H 0.07 1.37 5.80 -51.93 -0.30 1.07 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.28 7.74 -51.93 -0.40 0.88 16 41 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 42 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.07 0.75 7.74 -51.93 -0.40 0.35 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.79 7.97 -51.93 -0.41 0.37 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.68 7.22 -51.93 -0.38 0.31 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -30.58 343.87 -8.11 -38.69 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -7.93 Total: 1.84 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 0.37 Total: -3.27 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.78 Total: -46.21 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.06 Total: -12.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.58 -8.11 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.923 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds