Wall clock time and date at job start Tue Mar 31 2020 06:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46732 * 2 1 4 4 C 1.50696 * 109.46965 * 239.99757 * 2 1 3 5 5 H 1.07997 * 120.00199 * 240.00076 * 4 2 1 6 6 C 1.37882 * 119.99736 * 60.00284 * 4 2 1 7 7 N 1.31506 * 120.00236 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99811 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47034 * 270.00148 * 8 6 4 10 10 H 1.48502 * 109.47203 * 29.99813 * 8 6 4 11 11 H 1.48500 * 109.47124 * 150.00215 * 8 6 4 12 12 N 1.46495 * 109.46861 * 120.00072 * 2 1 3 13 13 C 1.46497 * 120.00624 * 59.99768 * 12 2 1 14 14 C 1.34777 * 119.99723 * 239.99980 * 12 2 1 15 15 O 1.21284 * 120.00512 * 354.52633 * 14 12 2 16 16 C 1.50703 * 120.00096 * 174.52792 * 14 12 2 17 17 H 1.08999 * 109.47416 * 45.21103 * 16 14 12 18 18 C 1.53003 * 109.46824 * 285.21207 * 16 14 12 19 19 N 1.46901 * 109.47384 * 165.21722 * 16 14 12 20 20 C 1.48557 * 111.00255 * 86.20742 * 19 16 14 21 21 H 1.09001 * 110.41189 * 40.26017 * 20 19 16 22 22 C 1.52997 * 110.41274 * 277.94119 * 20 19 16 23 23 C 1.54375 * 104.59578 * 159.04237 * 20 19 16 24 24 C 1.54261 * 105.06114 * 336.14315 * 23 20 19 25 25 C 1.48560 * 110.99939 * 201.62609 * 19 16 14 26 26 H 1.08997 * 110.41192 * 319.73973 * 25 19 16 27 27 C 1.53005 * 110.41030 * 82.18020 * 25 19 16 28 28 H 1.08994 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46956 * 300.00183 * 1 2 3 30 30 H 1.09006 * 109.47092 * 59.99867 * 1 2 3 31 31 H 0.97003 * 120.00516 * 179.97438 * 7 6 4 32 32 H 1.09009 * 109.46751 * 94.96926 * 13 12 2 33 33 H 1.08994 * 109.47648 * 214.97363 * 13 12 2 34 34 H 1.09000 * 109.46896 * 334.97875 * 13 12 2 35 35 H 1.09009 * 109.46984 * 67.70390 * 18 16 14 36 36 H 1.09000 * 109.46958 * 187.69184 * 18 16 14 37 37 H 1.08997 * 109.47606 * 307.70019 * 18 16 14 38 38 H 1.08999 * 109.47928 * 70.85994 * 22 20 19 39 39 H 1.08997 * 109.47397 * 190.86720 * 22 20 19 40 40 H 1.09002 * 109.46897 * 310.85963 * 22 20 19 41 41 H 1.08997 * 110.32415 * 95.04515 * 23 20 19 42 42 H 1.09007 * 110.32356 * 217.25239 * 23 20 19 43 43 H 1.09001 * 110.31875 * 118.89429 * 24 23 20 44 44 H 1.08998 * 110.33125 * 241.10631 * 24 23 20 45 45 H 1.09000 * 109.47024 * 64.85750 * 27 25 19 46 46 H 1.09000 * 109.46795 * 184.85851 * 27 25 19 47 47 H 1.08997 * 109.46808 * 304.85941 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.6305 -0.5441 -4.4118 10 1 2.4880 -2.5654 -3.7122 11 1 1.3444 -0.9490 -5.1123 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0833 15 8 3.1682 1.0927 1.8440 16 6 3.1935 -0.7051 3.3727 17 1 3.5170 -1.7255 3.1671 18 6 1.9974 -0.7317 4.3264 19 7 4.2962 0.0430 3.9911 20 6 3.7803 1.1524 4.8338 21 1 2.8995 0.8300 5.3891 22 6 3.4481 2.3697 3.9685 23 6 4.9383 1.4765 5.8018 24 6 5.7766 0.1834 5.8713 25 6 5.0546 -0.8132 4.9392 26 1 4.3732 -1.4432 5.5110 27 6 6.0721 -1.6723 4.1857 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7088 1.1613 -3.4844 32 1 2.4593 -2.7358 1.0495 33 1 1.5372 -2.2638 2.4970 34 1 0.7334 -2.3234 0.9101 35 1 1.2313 -1.3983 3.9299 36 1 2.3200 -1.0899 5.3040 37 1 1.5885 0.2739 4.4246 38 1 2.5619 2.1592 3.3699 39 1 3.2574 3.2301 4.6098 40 1 4.2886 2.5871 3.3093 41 1 5.5398 2.2972 5.4111 42 1 4.5481 1.7281 6.7881 43 1 6.7896 0.3695 5.5146 44 1 5.7980 -0.1997 6.8915 45 1 6.8213 -1.0282 3.7254 46 1 6.5583 -2.3547 4.8827 47 1 5.5613 -2.2458 3.4122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412169709.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:07 Heat of formation + Delta-G solvation = -38.364896 kcal Electronic energy + Delta-G solvation = -24399.202978 eV Core-core repulsion = 21195.705236 eV Total energy + Delta-G solvation = -3203.497742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50625 -39.67090 -37.00241 -35.12136 -34.23378 -33.48460 -31.34081 -29.63989 -28.91771 -27.58755 -27.27062 -25.60472 -24.67832 -22.85192 -21.26297 -20.67287 -19.48236 -18.43877 -17.85224 -17.56005 -16.88179 -16.38167 -15.83434 -15.77496 -15.46687 -14.93039 -14.71870 -14.39212 -14.19651 -13.88091 -13.63370 -13.46746 -13.44126 -13.16277 -13.01909 -12.88983 -12.80057 -12.72212 -12.70642 -12.56618 -12.44225 -12.17964 -12.09433 -12.06452 -11.91666 -11.58906 -11.41632 -11.21148 -11.14012 -10.56336 -10.20918 -9.24868 -9.17652 -8.13168 -6.29412 1.39653 1.41535 1.51075 1.94156 2.30938 2.47310 3.10833 3.14163 3.62417 3.70573 3.92205 4.04199 4.13645 4.17536 4.22893 4.37972 4.47537 4.49173 4.61328 4.67738 4.68694 4.78211 4.78647 4.83517 4.87152 4.89811 4.93484 4.98072 5.01593 5.07979 5.09644 5.17878 5.19654 5.30847 5.39406 5.41614 5.48315 5.60714 5.65813 5.74696 6.04713 6.13620 6.19222 6.20069 6.79361 6.96767 7.37232 7.64649 8.90564 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024383 B = 0.004704 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.051071 B = 5950.696911 C = 6151.630080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.005 0.995 4 C -0.535 4.535 5 H 0.056 0.944 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.284 1.284 10 H -0.262 1.262 11 H -0.279 1.279 12 N -0.606 5.606 13 C 0.081 3.919 14 C 0.498 3.502 15 O -0.570 6.570 16 C 0.065 3.935 17 H 0.109 0.891 18 C -0.170 4.170 19 N -0.510 5.510 20 C 0.054 3.946 21 H 0.074 0.926 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.113 4.113 25 C 0.055 3.945 26 H 0.071 0.929 27 C -0.135 4.135 28 H 0.047 0.953 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -7.210 19.517 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.163 3.837 3 H 0.023 0.977 4 C -0.574 4.574 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.210 1.210 10 H -0.186 1.186 11 H -0.204 1.204 12 N -0.338 5.338 13 C -0.061 4.061 14 C 0.286 3.714 15 O -0.450 6.450 16 C -0.047 4.047 17 H 0.127 0.873 18 C -0.229 4.229 19 N -0.235 5.235 20 C -0.054 4.054 21 H 0.091 0.909 22 C -0.175 4.175 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.053 4.053 26 H 0.088 0.912 27 C -0.192 4.192 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.965 -6.331 18.798 20.447 hybrid contribution -0.371 -0.177 -1.075 1.151 sum 4.594 -6.509 17.723 19.431 Atomic orbital electron populations 1.21864 0.97223 1.00005 0.99796 1.18431 0.91375 0.92003 0.81852 0.97668 1.21581 1.31552 1.12846 0.91390 0.92624 1.25715 0.95132 0.95684 1.01943 1.70017 1.37430 1.23967 1.24290 0.85499 0.77757 0.79231 0.78778 1.21048 1.18617 1.20394 1.48176 1.50002 1.13058 1.22561 1.21864 1.01233 0.80878 1.02170 1.21152 0.77872 0.86335 0.86047 1.90626 1.55151 1.21037 1.78161 1.21637 0.93028 0.97991 0.92074 0.87333 1.22350 0.97652 1.02884 0.99966 1.65200 1.20672 1.08603 1.29013 1.22832 0.97792 0.91713 0.93064 0.90851 1.21667 1.01099 0.96571 0.98147 1.22345 0.95998 0.98290 0.98885 1.22344 0.98952 0.94041 0.99711 1.22787 0.95517 0.94534 0.92451 0.91160 1.21737 0.98302 0.99042 1.00144 0.93406 0.96140 0.91602 0.92733 0.93269 0.88936 0.91087 0.90010 0.88895 0.92765 0.94499 0.92547 0.94773 0.92211 0.89349 0.91390 0.88861 0.93540 0.89867 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.96 71.98 0.64 -5.74 16 2 C 0.27 14.20 2.62 44.25 0.12 14.31 16 3 H 0.01 0.34 6.91 -2.39 -0.02 0.33 16 4 C -0.54 -30.04 8.37 25.60 0.21 -29.83 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.05 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 9 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.61 -26.23 2.75 -826.80 -2.28 -28.51 16 13 C 0.08 2.61 9.10 127.77 1.16 3.78 16 14 C 0.50 21.09 6.62 87.66 0.58 21.67 16 15 O -0.57 -29.40 11.54 -3.04 -0.04 -29.43 16 16 C 0.07 1.93 1.78 44.17 0.08 2.01 16 17 H 0.11 2.88 6.20 -2.39 -0.01 2.86 16 18 C -0.17 -3.87 7.47 71.98 0.54 -3.33 16 19 N -0.51 -14.85 4.43 -811.58 -3.59 -18.45 16 20 C 0.05 1.43 2.29 45.06 0.10 1.53 16 21 H 0.07 1.73 5.13 -2.39 -0.01 1.72 16 22 C -0.12 -4.00 7.62 71.98 0.55 -3.45 16 23 C -0.12 -2.40 6.55 31.49 0.21 -2.19 16 24 C -0.11 -1.98 6.55 31.49 0.21 -1.77 16 25 C 0.05 1.13 2.70 45.06 0.12 1.25 16 26 H 0.07 1.18 6.98 -2.39 -0.02 1.17 16 27 C -0.13 -2.74 9.44 71.98 0.68 -2.06 16 28 H 0.05 2.11 6.66 -2.39 -0.02 2.10 16 29 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.07 3.60 6.07 -2.38 -0.01 3.58 16 31 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.09 2.20 4.66 -2.39 -0.01 2.19 16 34 H 0.07 2.33 6.44 -2.39 -0.02 2.32 16 35 H 0.08 1.68 6.03 -2.38 -0.01 1.66 16 36 H 0.09 1.55 6.80 -2.39 -0.02 1.54 16 37 H 0.05 1.42 6.53 -2.39 -0.02 1.40 16 38 H 0.04 1.49 5.80 -2.39 -0.01 1.48 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.36 7.74 -2.39 -0.02 1.34 16 41 H 0.06 1.36 7.86 -2.39 -0.02 1.34 16 42 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.07 1.26 7.74 -2.39 -0.02 1.24 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 1.09 7.97 -2.39 -0.02 1.07 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.04 1.00 7.22 -2.39 -0.02 0.98 16 Total: -1.00 -71.44 343.87 2.96 -68.48 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.94 Total: 18.08 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.65 Total: -2.56 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -5.63 Total: -100.87 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.04 Total: -29.43 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.44 2.96 -68.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169709.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.117 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds