Wall clock time and date at job start Tue Mar 31 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46737 * 2 1 4 4 C 1.50700 * 109.46912 * 239.99752 * 2 1 3 5 5 H 1.08000 * 119.99820 * 239.99908 * 4 2 1 6 6 C 1.37874 * 120.00265 * 60.00463 * 4 2 1 7 7 N 1.31513 * 119.99826 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00145 * 180.27232 * 6 4 2 9 9 H 1.48501 * 109.47314 * 269.72155 * 8 6 4 10 10 H 1.48501 * 109.47319 * 29.72170 * 8 6 4 11 11 H 1.48504 * 109.47318 * 149.72053 * 8 6 4 12 12 N 1.46500 * 109.46779 * 119.99902 * 2 1 3 13 13 C 1.46496 * 120.00360 * 59.79492 * 12 2 1 14 14 C 1.34776 * 119.99575 * 239.79203 * 12 2 1 15 15 O 1.21288 * 120.00095 * 184.88021 * 14 12 2 16 16 C 1.50695 * 120.00329 * 4.87455 * 14 12 2 17 17 H 1.08999 * 109.47095 * 20.99557 * 16 14 12 18 18 C 1.53000 * 109.47436 * 260.99187 * 16 14 12 19 19 N 1.46898 * 109.47438 * 140.98807 * 16 14 12 20 20 C 1.47445 * 111.00620 * 224.14552 * 19 16 14 21 21 H 1.09003 * 109.88413 * 242.66479 * 20 19 16 22 22 C 1.52994 * 109.88504 * 3.84883 * 20 19 16 23 23 C 1.54316 * 107.23378 * 123.25669 * 20 19 16 24 24 C 1.55138 * 103.02218 * 22.28401 * 23 20 19 25 25 C 1.47849 * 111.00043 * 344.99035 * 19 16 14 26 26 H 1.09004 * 110.37098 * 332.56791 * 25 19 16 27 27 C 1.52994 * 110.37818 * 94.80055 * 25 19 16 28 28 H 1.08996 * 109.47456 * 300.00291 * 1 2 3 29 29 H 1.08998 * 109.47126 * 60.00472 * 1 2 3 30 30 H 1.09005 * 109.47019 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00175 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47121 * 95.09706 * 13 12 2 33 33 H 1.09004 * 109.47116 * 215.09911 * 13 12 2 34 34 H 1.08996 * 109.47025 * 335.09036 * 13 12 2 35 35 H 1.08992 * 109.47059 * 304.71549 * 18 16 14 36 36 H 1.08997 * 109.47179 * 64.72335 * 18 16 14 37 37 H 1.09000 * 109.47029 * 184.72017 * 18 16 14 38 38 H 1.08999 * 109.47183 * 63.72733 * 22 20 19 39 39 H 1.09003 * 109.47029 * 183.72808 * 22 20 19 40 40 H 1.09007 * 109.47681 * 303.72578 * 22 20 19 41 41 H 1.08997 * 110.70451 * 263.89715 * 23 20 19 42 42 H 1.08997 * 110.85398 * 140.73895 * 23 20 19 43 43 H 1.08991 * 110.99217 * 206.25239 * 24 23 20 44 44 H 1.09001 * 110.99024 * 82.43685 * 24 23 20 45 45 H 1.09003 * 109.47194 * 93.54538 * 27 25 19 46 46 H 1.08996 * 109.47256 * 213.54558 * 27 25 19 47 47 H 1.09006 * 109.47033 * 333.54755 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3156 -1.1246 -4.0078 9 1 3.6224 -0.5513 -4.4188 10 1 2.4812 -2.5697 -3.7086 11 1 1.3332 -0.9564 -5.1087 12 7 2.0183 -0.6906 1.1962 13 6 1.6606 -2.0918 1.4304 14 6 2.7965 -0.0368 2.0812 15 8 3.2734 -0.6314 3.0247 16 6 3.0744 1.4330 1.8986 17 1 2.3064 1.8715 1.2613 18 6 4.4454 1.6156 1.2444 19 7 3.0637 2.0998 3.2075 20 6 2.3159 3.3692 3.1479 21 1 2.9820 4.2027 3.3711 22 6 1.7024 3.5470 1.7577 23 6 1.1983 3.2916 4.2091 24 6 1.7276 2.2184 5.1965 25 6 2.4454 1.2370 4.2366 26 1 1.7266 0.5568 3.7796 27 6 3.5205 0.4486 4.9870 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7083 1.1608 -3.4844 32 1 2.4540 -2.7372 1.0533 33 1 1.5326 -2.2603 2.4997 34 1 0.7292 -2.3205 0.9125 35 1 5.2026 1.1048 1.8391 36 1 4.4274 1.1941 0.2393 37 1 4.6828 2.6779 1.1886 38 1 0.9740 2.7562 1.5782 39 1 1.2076 4.5165 1.7003 40 1 2.4883 3.4950 1.0042 41 1 0.2597 2.9704 3.7575 42 1 1.0738 4.2504 4.7124 43 1 0.9053 1.7259 5.7154 44 1 2.4304 2.6540 5.9067 45 1 3.8102 0.9937 5.8854 46 1 3.1263 -0.5284 5.2662 47 1 4.3912 0.3190 4.3441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412169710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:10 Heat of formation + Delta-G solvation = 2.469665 kcal Electronic energy + Delta-G solvation = -25157.801553 eV Core-core repulsion = 21956.074531 eV Total energy + Delta-G solvation = -3201.727022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58794 -38.02145 -35.70316 -33.50041 -32.71560 -31.86278 -29.24309 -28.85708 -27.64181 -26.60861 -25.36325 -23.91515 -22.77341 -21.43216 -20.53940 -19.49793 -17.68288 -17.04070 -16.48085 -15.84274 -15.25448 -14.93426 -14.57117 -14.42373 -13.81770 -13.52822 -13.13740 -12.89978 -12.75942 -12.49730 -12.26751 -12.05372 -11.79264 -11.67922 -11.59133 -11.49682 -11.32451 -11.11909 -10.96123 -10.92727 -10.80766 -10.75985 -10.57995 -10.50878 -10.38108 -10.27960 -10.09489 -10.06116 -9.36827 -8.63605 -8.47302 -7.89434 -7.61199 -6.21607 -4.29642 3.19846 3.27239 3.28988 3.35852 3.89822 4.27544 4.31089 4.84644 4.87983 5.04215 5.09290 5.31831 5.44331 5.55127 5.59981 5.64332 5.77988 5.83483 5.92330 5.97083 6.07277 6.10147 6.14151 6.19102 6.21107 6.28134 6.31469 6.38776 6.43119 6.45548 6.51182 6.54566 6.61695 6.66345 6.75014 6.86458 7.03598 7.15779 7.31096 7.45321 7.47440 7.64252 7.82437 8.07717 8.43675 8.73874 9.04331 9.38915 10.83056 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.006037 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.486056 B = 4636.889639 C = 5041.564797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.252 3.748 3 H 0.055 0.945 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.592 5.592 13 C 0.100 3.900 14 C 0.501 3.499 15 O -0.556 6.556 16 C 0.027 3.973 17 H 0.113 0.887 18 C -0.125 4.125 19 N -0.504 5.504 20 C 0.067 3.933 21 H 0.084 0.916 22 C -0.173 4.173 23 C -0.139 4.139 24 C -0.130 4.130 25 C 0.079 3.921 26 H 0.054 0.946 27 C -0.096 4.096 28 H 0.010 0.990 29 H 0.095 0.905 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.046 0.954 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 4.375 9.388 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.151 3.849 3 H 0.072 0.928 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.323 5.323 13 C -0.044 4.044 14 C 0.289 3.711 15 O -0.437 6.437 16 C -0.083 4.083 17 H 0.130 0.870 18 C -0.183 4.183 19 N -0.229 5.229 20 C -0.041 4.041 21 H 0.102 0.898 22 C -0.231 4.231 23 C -0.177 4.177 24 C -0.169 4.169 25 C -0.029 4.029 26 H 0.072 0.928 27 C -0.154 4.154 28 H 0.029 0.971 29 H 0.114 0.886 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.043 0.957 46 H 0.065 0.935 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.565 4.255 9.823 10.720 hybrid contribution -0.675 -0.651 -1.359 1.651 sum -0.111 3.604 8.464 9.200 Atomic orbital electron populations 1.22153 0.98237 0.99962 1.00727 1.19109 0.91311 0.93424 0.81076 0.92786 1.21324 1.31926 1.13275 0.90018 0.92028 1.24873 0.94720 0.94950 0.98995 1.69844 1.36118 1.22705 1.24004 0.86494 0.78648 0.80122 0.82211 1.20491 1.19851 1.21083 1.48359 1.48615 1.11875 1.23448 1.21312 1.00325 0.82834 0.99880 1.20680 0.78678 0.89840 0.81935 1.90704 1.51885 1.69679 1.31434 1.22589 1.01441 0.91516 0.92795 0.86991 1.21594 0.94804 1.01763 1.00155 1.63899 1.51011 1.03423 1.04595 1.22476 0.93525 0.93575 0.94558 0.89797 1.22366 1.01523 1.01859 0.97340 1.22882 0.98416 0.99460 0.96962 1.22893 0.99723 0.96615 0.97632 1.22699 0.95389 0.93307 0.91507 0.92826 1.21572 0.99538 0.97175 0.97081 0.97139 0.88620 0.94701 0.92552 0.93722 0.92907 0.91223 0.92360 0.91447 0.92192 0.91845 0.92109 0.91038 0.91534 0.91208 0.91490 0.90948 0.95747 0.93453 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.95 37.16 0.33 -3.03 16 2 C 0.25 5.75 2.46 -69.08 -0.17 5.58 16 3 H 0.05 1.29 5.22 -51.93 -0.27 1.02 16 4 C -0.53 -13.30 8.37 -34.44 -0.29 -13.59 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.00 11.32 55.43 0.63 -22.37 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.59 -12.55 2.75 -175.27 -0.48 -13.03 16 13 C 0.10 1.93 9.56 59.84 0.57 2.50 16 14 C 0.50 10.31 4.93 -10.99 -0.05 10.25 16 15 O -0.56 -11.91 10.47 5.55 0.06 -11.85 16 16 C 0.03 0.50 1.72 -68.87 -0.12 0.38 16 17 H 0.11 2.12 1.52 -51.93 -0.08 2.04 16 18 C -0.12 -2.21 9.27 37.16 0.34 -1.86 16 19 N -0.50 -8.37 4.63 -209.05 -0.97 -9.33 16 20 C 0.07 0.95 4.02 -66.73 -0.27 0.68 16 21 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 22 C -0.17 -2.51 7.54 37.15 0.28 -2.23 16 23 C -0.14 -1.76 6.47 -24.91 -0.16 -1.93 16 24 C -0.13 -1.75 6.45 -24.59 -0.16 -1.91 16 25 C 0.08 1.31 2.33 -66.19 -0.15 1.15 16 26 H 0.05 1.03 5.85 -51.93 -0.30 0.73 16 27 C -0.10 -1.62 7.95 37.15 0.30 -1.32 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 2.30 6.07 -51.93 -0.32 1.99 16 30 H 0.03 0.74 6.66 -51.93 -0.35 0.40 16 31 H 0.26 6.58 8.31 -40.82 -0.34 6.25 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.96 7.66 -51.93 -0.40 0.57 16 34 H 0.07 1.30 6.43 -51.93 -0.33 0.96 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 38 H 0.06 1.03 7.07 -51.93 -0.37 0.67 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 41 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.91 7.69 -51.93 -0.40 0.52 16 45 H 0.02 0.36 7.49 -51.93 -0.39 -0.03 16 46 H 0.05 0.81 7.74 -51.93 -0.40 0.41 16 47 H 0.08 1.45 6.65 -51.93 -0.35 1.11 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -26.31 344.86 -8.26 -34.57 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.03 Total: 5.46 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 0.36 Total: -3.71 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.82 Total: -44.73 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.06 Total: -11.85 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.31 -8.26 -34.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.035 kcal (2) G-P(sol) polarization free energy of solvation -26.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds