Wall clock time and date at job start Tue Mar 31 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46737 * 2 1 4 4 C 1.50700 * 109.46912 * 239.99752 * 2 1 3 5 5 H 1.08000 * 119.99820 * 239.99908 * 4 2 1 6 6 C 1.37874 * 120.00265 * 60.00463 * 4 2 1 7 7 N 1.31513 * 119.99826 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00145 * 180.27232 * 6 4 2 9 9 H 1.48501 * 109.47314 * 269.72155 * 8 6 4 10 10 H 1.48501 * 109.47319 * 29.72170 * 8 6 4 11 11 H 1.48504 * 109.47318 * 149.72053 * 8 6 4 12 12 N 1.46500 * 109.46779 * 119.99902 * 2 1 3 13 13 C 1.46496 * 120.00360 * 59.79492 * 12 2 1 14 14 C 1.34776 * 119.99575 * 239.79203 * 12 2 1 15 15 O 1.21288 * 120.00095 * 184.88021 * 14 12 2 16 16 C 1.50695 * 120.00329 * 4.87455 * 14 12 2 17 17 H 1.08999 * 109.47095 * 20.99557 * 16 14 12 18 18 C 1.53000 * 109.47436 * 260.99187 * 16 14 12 19 19 N 1.46898 * 109.47438 * 140.98807 * 16 14 12 20 20 C 1.47445 * 111.00620 * 224.14552 * 19 16 14 21 21 H 1.09003 * 109.88413 * 242.66479 * 20 19 16 22 22 C 1.52994 * 109.88504 * 3.84883 * 20 19 16 23 23 C 1.54316 * 107.23378 * 123.25669 * 20 19 16 24 24 C 1.55138 * 103.02218 * 22.28401 * 23 20 19 25 25 C 1.47849 * 111.00043 * 344.99035 * 19 16 14 26 26 H 1.09004 * 110.37098 * 332.56791 * 25 19 16 27 27 C 1.52994 * 110.37818 * 94.80055 * 25 19 16 28 28 H 1.08996 * 109.47456 * 300.00291 * 1 2 3 29 29 H 1.08998 * 109.47126 * 60.00472 * 1 2 3 30 30 H 1.09005 * 109.47019 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00175 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47121 * 95.09706 * 13 12 2 33 33 H 1.09004 * 109.47116 * 215.09911 * 13 12 2 34 34 H 1.08996 * 109.47025 * 335.09036 * 13 12 2 35 35 H 1.08992 * 109.47059 * 304.71549 * 18 16 14 36 36 H 1.08997 * 109.47179 * 64.72335 * 18 16 14 37 37 H 1.09000 * 109.47029 * 184.72017 * 18 16 14 38 38 H 1.08999 * 109.47183 * 63.72733 * 22 20 19 39 39 H 1.09003 * 109.47029 * 183.72808 * 22 20 19 40 40 H 1.09007 * 109.47681 * 303.72578 * 22 20 19 41 41 H 1.08997 * 110.70451 * 263.89715 * 23 20 19 42 42 H 1.08997 * 110.85398 * 140.73895 * 23 20 19 43 43 H 1.08991 * 110.99217 * 206.25239 * 24 23 20 44 44 H 1.09001 * 110.99024 * 82.43685 * 24 23 20 45 45 H 1.09003 * 109.47194 * 93.54538 * 27 25 19 46 46 H 1.08996 * 109.47256 * 213.54558 * 27 25 19 47 47 H 1.09006 * 109.47033 * 333.54755 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3156 -1.1246 -4.0078 9 1 3.6224 -0.5513 -4.4188 10 1 2.4812 -2.5697 -3.7086 11 1 1.3332 -0.9564 -5.1087 12 7 2.0183 -0.6906 1.1962 13 6 1.6606 -2.0918 1.4304 14 6 2.7965 -0.0368 2.0812 15 8 3.2734 -0.6314 3.0247 16 6 3.0744 1.4330 1.8986 17 1 2.3064 1.8715 1.2613 18 6 4.4454 1.6156 1.2444 19 7 3.0637 2.0998 3.2075 20 6 2.3159 3.3692 3.1479 21 1 2.9820 4.2027 3.3711 22 6 1.7024 3.5470 1.7577 23 6 1.1983 3.2916 4.2091 24 6 1.7276 2.2184 5.1965 25 6 2.4454 1.2370 4.2366 26 1 1.7266 0.5568 3.7796 27 6 3.5205 0.4486 4.9870 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7083 1.1608 -3.4844 32 1 2.4540 -2.7372 1.0533 33 1 1.5326 -2.2603 2.4997 34 1 0.7292 -2.3205 0.9125 35 1 5.2026 1.1048 1.8391 36 1 4.4274 1.1941 0.2393 37 1 4.6828 2.6779 1.1886 38 1 0.9740 2.7562 1.5782 39 1 1.2076 4.5165 1.7003 40 1 2.4883 3.4950 1.0042 41 1 0.2597 2.9704 3.7575 42 1 1.0738 4.2504 4.7124 43 1 0.9053 1.7259 5.7154 44 1 2.4304 2.6540 5.9067 45 1 3.8102 0.9937 5.8854 46 1 3.1263 -0.5284 5.2662 47 1 4.3912 0.3190 4.3441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412169710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:09 Heat of formation + Delta-G solvation = -11.784570 kcal Electronic energy + Delta-G solvation = -25158.419663 eV Core-core repulsion = 21956.074531 eV Total energy + Delta-G solvation = -3202.345132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.02779 -39.46176 -37.42813 -34.87160 -34.53831 -33.14796 -31.05027 -30.11805 -28.92945 -28.19697 -27.29808 -25.18170 -24.15797 -23.14387 -21.78560 -20.85959 -19.25008 -18.63907 -18.17459 -17.40210 -16.69936 -16.50254 -16.19466 -15.89050 -15.18714 -15.05721 -14.61310 -14.50279 -14.07911 -13.78769 -13.64486 -13.52909 -13.37869 -13.24252 -13.12545 -12.91816 -12.86288 -12.79521 -12.73684 -12.49998 -12.24749 -12.20955 -12.09598 -12.06140 -11.70801 -11.57264 -11.53606 -11.34628 -11.19370 -10.54024 -10.12195 -9.33573 -9.21988 -8.15838 -6.29856 1.41170 1.44450 1.52068 1.72705 2.29014 2.45892 2.97447 3.12392 3.60964 3.70781 3.87817 3.94928 4.18492 4.24151 4.39024 4.45032 4.47110 4.52492 4.57623 4.61175 4.69097 4.75349 4.80541 4.87257 4.88829 4.89711 4.93973 4.98837 5.01057 5.04446 5.08353 5.15260 5.19692 5.26989 5.30128 5.38503 5.45024 5.55978 5.66523 5.72026 5.96256 6.07793 6.16955 6.22594 6.65736 6.83962 7.34195 7.46148 8.87201 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.006037 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.486056 B = 4636.889639 C = 5041.564797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.260 3.740 3 H 0.044 0.956 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.031 3.969 7 N -0.905 5.905 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.275 1.275 11 H -0.280 1.280 12 N -0.600 5.600 13 C 0.101 3.899 14 C 0.496 3.504 15 O -0.567 6.567 16 C 0.031 3.969 17 H 0.108 0.892 18 C -0.118 4.118 19 N -0.506 5.506 20 C 0.063 3.937 21 H 0.102 0.898 22 C -0.168 4.168 23 C -0.132 4.132 24 C -0.123 4.123 25 C 0.074 3.926 26 H 0.023 0.977 27 C -0.087 4.087 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.267 0.733 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.035 0.965 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 5.604 10.255 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.158 3.842 3 H 0.061 0.939 4 C -0.580 4.580 5 H 0.067 0.933 6 C -0.170 4.170 7 N -0.544 5.544 8 Si 0.777 3.223 9 H -0.204 1.204 10 H -0.200 1.200 11 H -0.205 1.205 12 N -0.331 5.331 13 C -0.042 4.042 14 C 0.285 3.715 15 O -0.448 6.448 16 C -0.080 4.080 17 H 0.125 0.875 18 C -0.176 4.176 19 N -0.232 5.232 20 C -0.045 4.045 21 H 0.120 0.880 22 C -0.225 4.225 23 C -0.171 4.171 24 C -0.161 4.161 25 C -0.034 4.034 26 H 0.041 0.959 27 C -0.145 4.145 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.397 5.484 10.700 12.030 hybrid contribution -0.606 -1.038 -1.591 1.994 sum -0.209 4.446 9.109 10.138 Atomic orbital electron populations 1.21977 0.97621 0.99909 1.00362 1.18881 0.91612 0.92729 0.80961 0.93881 1.21481 1.32062 1.13125 0.91305 0.93339 1.25450 0.94883 0.95540 1.01093 1.69925 1.36536 1.23364 1.24555 0.85674 0.78182 0.78994 0.79499 1.20357 1.19975 1.20544 1.48403 1.48994 1.12520 1.23208 1.21347 1.00352 0.82015 1.00466 1.21124 0.78109 0.90823 0.81490 1.90702 1.52163 1.70254 1.31723 1.22540 1.01404 0.90091 0.93943 0.87483 1.21523 0.94409 1.02895 0.98771 1.63936 1.51774 1.04039 1.03443 1.22650 0.94312 0.92680 0.94830 0.87968 1.22288 1.00674 1.02257 0.97287 1.22868 0.97296 1.00646 0.96250 1.22864 1.00004 0.95914 0.97275 1.22675 0.94841 0.93712 0.92151 0.95895 1.21441 0.98469 0.97094 0.97466 0.95821 0.90497 0.94523 0.92400 0.94194 0.92041 0.90687 0.92933 0.93361 0.90081 0.94186 0.89759 0.92312 0.92242 0.88269 0.90463 0.89456 0.93451 0.94626 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 8.95 71.98 0.64 -5.56 16 2 C 0.26 12.02 2.46 44.25 0.11 12.13 16 3 H 0.04 2.11 5.22 -2.39 -0.01 2.10 16 4 C -0.54 -27.63 8.37 25.60 0.21 -27.42 16 5 H 0.05 2.56 7.65 -2.91 -0.02 2.53 16 6 C 0.03 1.59 5.30 84.65 0.45 2.04 16 7 N -0.91 -46.90 11.32 21.45 0.24 -46.66 16 8 Si 0.95 41.10 29.54 68.60 2.03 43.12 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.60 -25.82 2.75 -826.82 -2.28 -28.10 16 13 C 0.10 3.95 9.56 127.77 1.22 5.17 16 14 C 0.50 20.70 4.93 87.66 0.43 21.13 16 15 O -0.57 -24.66 10.47 -3.05 -0.03 -24.69 16 16 C 0.03 1.14 1.72 44.17 0.08 1.21 16 17 H 0.11 4.10 1.52 -2.39 0.00 4.09 16 18 C -0.12 -4.18 9.27 71.98 0.67 -3.51 16 19 N -0.51 -16.25 4.63 -815.30 -3.77 -20.02 16 20 C 0.06 1.64 4.02 45.26 0.18 1.82 16 21 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 22 C -0.17 -4.63 7.54 71.98 0.54 -4.09 16 23 C -0.13 -2.96 6.47 31.77 0.21 -2.75 16 24 C -0.12 -2.95 6.45 31.98 0.21 -2.74 16 25 C 0.07 2.39 2.33 45.38 0.11 2.49 16 26 H 0.02 0.88 5.85 -2.38 -0.01 0.87 16 27 C -0.09 -2.86 7.95 71.98 0.57 -2.29 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 3.72 6.07 -2.39 -0.01 3.71 16 30 H 0.04 1.56 6.66 -2.38 -0.02 1.54 16 31 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 32 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 2.26 7.66 -2.39 -0.02 2.24 16 34 H 0.07 2.80 6.43 -2.39 -0.02 2.78 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.48 8.02 -2.39 -0.02 2.46 16 38 H 0.04 1.29 7.07 -2.39 -0.02 1.27 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.76 6.54 -2.38 -0.02 1.74 16 41 H 0.06 1.43 7.79 -2.39 -0.02 1.41 16 42 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 1.87 7.69 -2.39 -0.02 1.85 16 45 H 0.05 1.31 7.49 -2.39 -0.02 1.29 16 46 H 0.03 1.22 7.74 -2.39 -0.02 1.20 16 47 H 0.05 1.91 6.65 -2.38 -0.02 1.90 16 Total: -1.00 -55.77 344.86 2.75 -53.02 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.94 Total: 25.70 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.63 Total: -2.37 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -5.81 Total: -94.78 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.03 Total: -24.69 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Total: -55.77 2.75 -53.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412169710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.233 kcal (2) G-P(sol) polarization free energy of solvation -55.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds