Wall clock time and date at job start Tue Mar 31 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 8 8 H 1.09002 * 109.47131 * 300.00452 * 7 6 5 9 9 N 1.46500 * 109.47023 * 179.97438 * 7 6 5 10 10 C 1.34774 * 120.00083 * 85.00169 * 9 7 6 11 11 O 1.21287 * 119.99934 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00195 * 179.97438 * 10 9 7 13 13 H 1.09005 * 109.46915 * 319.99745 * 12 10 9 14 14 N 1.46898 * 109.47014 * 200.00483 * 12 10 9 15 15 C 1.52994 * 109.47006 * 80.00077 * 12 10 9 16 16 C 1.53007 * 109.47239 * 185.00079 * 15 12 10 17 17 C 1.50699 * 109.46970 * 180.02562 * 16 15 12 18 18 H 1.07991 * 120.00347 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99413 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46932 * 90.00512 * 21 19 17 23 23 H 1.48502 * 109.47106 * 210.00307 * 21 19 17 24 24 H 1.48491 * 109.47322 * 330.00481 * 21 19 17 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09001 * 109.47362 * 300.00732 * 25 2 1 27 27 C 1.53006 * 109.46997 * 60.00177 * 25 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 35 35 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 36 36 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99661 * 265.00485 * 9 7 6 38 38 H 1.00905 * 110.99862 * 299.99747 * 14 12 10 39 39 H 1.00893 * 111.00292 * 63.95312 * 14 12 10 40 40 H 1.09003 * 109.47428 * 304.99957 * 15 12 10 41 41 H 1.09001 * 109.47168 * 65.00332 * 15 12 10 42 42 H 1.09003 * 109.46811 * 300.00255 * 16 15 12 43 43 H 1.09001 * 109.46835 * 60.00048 * 16 15 12 44 44 H 0.97004 * 119.99558 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47261 * 59.99820 * 27 25 2 46 46 H 1.09001 * 109.47377 * 180.02562 * 27 25 2 47 47 H 1.09000 * 109.46866 * 300.00212 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5706 -0.7202 1.2490 8 1 3.9335 0.3076 1.2487 9 7 4.0589 -1.4108 2.4452 10 6 5.2808 -1.1250 2.9367 11 8 5.9760 -0.2957 2.3890 12 6 5.7829 -1.8349 4.1675 13 1 4.9681 -1.9408 4.8837 14 7 6.8695 -1.0543 4.7741 15 6 6.3048 -3.2200 3.7801 16 6 6.6988 -3.9883 5.0433 17 6 7.2133 -5.3523 4.6616 18 1 7.2555 -5.6421 3.6221 19 6 7.6312 -6.2298 5.6396 20 7 7.5802 -5.8767 6.9054 21 14 8.2684 -7.9209 5.1665 22 1 9.7358 -7.8539 4.9487 23 1 7.9734 -8.8841 6.2576 24 1 7.6025 -8.3691 3.9172 25 6 2.0400 -0.7212 1.2493 26 1 1.6766 -0.2074 2.1393 27 6 1.5300 -2.1637 1.2493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2074 -2.1391 33 1 3.9334 -1.2342 -2.1397 34 1 3.9330 0.3071 -1.2497 35 1 3.7176 -2.4693 0.0000 36 1 5.1706 -1.4408 -0.0002 37 1 3.5027 -2.0738 2.8834 38 1 7.6375 -0.9420 4.1294 39 1 6.5347 -0.1590 5.0972 40 1 5.5248 -3.7671 3.2506 41 1 7.1758 -3.1124 3.1338 42 1 7.4788 -3.4411 5.5728 43 1 5.8277 -4.0959 5.6896 44 1 7.8739 -6.4943 7.5933 45 1 1.8933 -2.6776 0.3594 46 1 1.8930 -2.6774 2.1395 47 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:57 Heat of formation + Delta-G solvation = -79.874677 kcal Electronic energy + Delta-G solvation = -23115.270656 eV Core-core repulsion = 19909.972915 eV Total energy + Delta-G solvation = -3205.297741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50183 -38.92570 -35.22214 -34.51532 -32.83918 -32.74251 -30.72066 -30.05173 -27.70414 -26.33926 -25.85187 -23.78445 -22.21618 -21.52994 -20.43986 -19.78146 -18.70617 -17.20122 -16.42128 -16.10692 -15.68493 -15.38562 -14.90650 -14.71163 -14.53361 -14.27602 -14.04172 -13.55902 -13.44676 -13.11568 -12.81969 -12.50999 -12.30400 -12.22660 -11.97232 -11.82072 -11.65143 -11.51262 -11.34716 -10.94536 -10.89110 -10.72201 -10.59153 -10.53422 -10.35694 -10.32117 -10.04475 -9.77687 -9.34953 -8.99195 -8.94322 -8.32595 -8.17366 -5.92942 -3.95015 2.83735 3.31515 3.35446 3.41621 3.44529 4.36196 4.42263 4.50568 4.52933 4.84864 4.90020 4.91939 5.04190 5.08146 5.10672 5.22083 5.29812 5.36040 5.41523 5.42598 5.47699 5.56489 5.57783 5.65674 5.72124 5.76687 5.83036 5.87101 5.87634 5.97943 6.06886 6.11043 6.15560 6.34357 6.45328 6.59404 6.68357 7.10813 7.42319 7.66885 7.77408 7.82954 7.97613 8.14458 8.39286 8.49714 9.13079 9.68051 11.17953 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.003468 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.437722 B = 8071.919816 C = 8544.315889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.132 4.132 7 C 0.150 3.850 8 H 0.082 0.918 9 N -0.727 5.727 10 C 0.483 3.517 11 O -0.555 6.555 12 C 0.077 3.923 13 H 0.096 0.904 14 N -0.807 5.807 15 C -0.094 4.094 16 C 0.031 3.969 17 C -0.522 4.522 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.093 4.093 26 H 0.074 0.926 27 C -0.156 4.156 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.401 0.599 38 H 0.347 0.653 39 H 0.333 0.667 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.013 0.987 44 H 0.259 0.741 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 11.976 -13.885 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.170 4.170 7 C 0.045 3.955 8 H 0.100 0.900 9 N -0.379 5.379 10 C 0.269 3.731 11 O -0.433 6.433 12 C -0.038 4.038 13 H 0.114 0.886 14 N -0.335 5.335 15 C -0.133 4.133 16 C -0.006 4.006 17 C -0.560 4.560 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.112 4.112 26 H 0.092 0.908 27 C -0.213 4.213 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.439 11.909 -13.536 23.098 hybrid contribution -0.100 -0.593 -0.788 0.991 sum -14.539 11.315 -14.324 23.336 Atomic orbital electron populations 1.21880 0.95036 1.02081 1.01570 1.21082 0.95553 0.99361 0.94259 0.91155 1.21666 0.95608 1.00995 0.97194 1.21481 0.95383 1.00889 0.97658 1.21955 1.01346 0.99836 0.93887 1.20913 0.92821 0.97107 0.84684 0.89952 1.46319 1.18363 1.43633 1.29581 1.22723 0.80796 0.82353 0.87211 1.90635 1.56236 1.34838 1.61591 1.21831 0.95154 0.95918 0.90932 0.88591 1.58999 1.09383 1.22244 1.42860 1.21641 0.99532 0.90343 1.01740 1.19016 0.97199 0.93513 0.90862 1.21283 1.42325 0.99646 0.92795 0.93007 1.24993 0.95964 0.98362 0.95022 1.69977 1.47850 1.35937 0.99425 0.86654 0.79268 0.84390 0.78012 1.20727 1.21292 1.20011 1.21388 0.94001 0.97240 0.98541 0.90756 1.22031 1.01241 0.95711 1.02363 0.92205 0.92757 0.92719 0.91469 0.92079 0.91813 0.91982 0.91349 0.91465 0.76361 0.83872 0.85525 0.92904 0.92914 0.94690 0.96906 0.93113 0.91618 0.92577 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.84 37.16 0.33 -0.63 16 2 C -0.08 -0.63 2.49 -90.63 -0.23 -0.86 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.12 -0.89 4.93 -26.74 -0.13 -1.02 16 5 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 6 C -0.13 -1.47 5.22 -26.73 -0.14 -1.61 16 7 C 0.15 1.68 2.15 -67.90 -0.15 1.53 16 8 H 0.08 1.08 7.58 -51.93 -0.39 0.68 16 9 N -0.73 -9.14 5.00 -53.78 -0.27 -9.41 16 10 C 0.48 7.65 7.03 -10.99 -0.08 7.57 16 11 O -0.56 -10.27 15.91 5.55 0.09 -10.18 16 12 C 0.08 1.31 3.15 -68.87 -0.22 1.10 16 13 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 14 N -0.81 -13.84 8.44 -5.66 -0.05 -13.89 16 15 C -0.09 -1.92 4.78 -26.73 -0.13 -2.04 16 16 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 17 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.09 -0.80 2.41 -90.59 -0.22 -1.02 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 C -0.16 -1.26 7.98 37.16 0.30 -0.96 16 28 H 0.06 0.38 6.43 -51.93 -0.33 0.04 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.75 6.43 -51.93 -0.33 0.41 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.40 4.43 6.87 -40.82 -0.28 4.15 16 38 H 0.35 6.06 8.58 -39.29 -0.34 5.73 16 39 H 0.33 4.97 9.06 -39.30 -0.36 4.62 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 46 H 0.06 0.47 6.51 -51.93 -0.34 0.13 16 47 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -31.77 358.46 -8.78 -40.55 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -8.31 Total: 9.08 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.36 Total: -12.07 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.42 Total: -49.58 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.77 -8.78 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.327 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds