Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 8 8 H 1.09002 * 109.47131 * 300.00452 * 7 6 5 9 9 N 1.46500 * 109.47023 * 179.97438 * 7 6 5 10 10 C 1.34774 * 120.00083 * 85.00169 * 9 7 6 11 11 O 1.21287 * 119.99934 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00195 * 179.97438 * 10 9 7 13 13 H 1.09005 * 109.46915 * 319.99745 * 12 10 9 14 14 N 1.46898 * 109.47014 * 200.00483 * 12 10 9 15 15 C 1.52994 * 109.47006 * 80.00077 * 12 10 9 16 16 C 1.53007 * 109.47239 * 185.00079 * 15 12 10 17 17 C 1.50699 * 109.46970 * 180.02562 * 16 15 12 18 18 H 1.07991 * 120.00347 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99331 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00297 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99413 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46932 * 90.00512 * 21 19 17 23 23 H 1.48502 * 109.47106 * 210.00307 * 21 19 17 24 24 H 1.48491 * 109.47322 * 330.00481 * 21 19 17 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09001 * 109.47362 * 300.00732 * 25 2 1 27 27 C 1.53006 * 109.46997 * 60.00177 * 25 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 35 35 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 36 36 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99661 * 265.00485 * 9 7 6 38 38 H 1.00905 * 110.99862 * 299.99747 * 14 12 10 39 39 H 1.00893 * 111.00292 * 63.95312 * 14 12 10 40 40 H 1.09003 * 109.47428 * 304.99957 * 15 12 10 41 41 H 1.09001 * 109.47168 * 65.00332 * 15 12 10 42 42 H 1.09003 * 109.46811 * 300.00255 * 16 15 12 43 43 H 1.09001 * 109.46835 * 60.00048 * 16 15 12 44 44 H 0.97004 * 119.99558 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47261 * 59.99820 * 27 25 2 46 46 H 1.09001 * 109.47377 * 180.02562 * 27 25 2 47 47 H 1.09000 * 109.46866 * 300.00212 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5706 -0.7202 1.2490 8 1 3.9335 0.3076 1.2487 9 7 4.0589 -1.4108 2.4452 10 6 5.2808 -1.1250 2.9367 11 8 5.9760 -0.2957 2.3890 12 6 5.7829 -1.8349 4.1675 13 1 4.9681 -1.9408 4.8837 14 7 6.8695 -1.0543 4.7741 15 6 6.3048 -3.2200 3.7801 16 6 6.6988 -3.9883 5.0433 17 6 7.2133 -5.3523 4.6616 18 1 7.2555 -5.6421 3.6221 19 6 7.6312 -6.2298 5.6396 20 7 7.5802 -5.8767 6.9054 21 14 8.2684 -7.9209 5.1665 22 1 9.7358 -7.8539 4.9487 23 1 7.9734 -8.8841 6.2576 24 1 7.6025 -8.3691 3.9172 25 6 2.0400 -0.7212 1.2493 26 1 1.6766 -0.2074 2.1393 27 6 1.5300 -2.1637 1.2493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2074 -2.1391 33 1 3.9334 -1.2342 -2.1397 34 1 3.9330 0.3071 -1.2497 35 1 3.7176 -2.4693 0.0000 36 1 5.1706 -1.4408 -0.0002 37 1 3.5027 -2.0738 2.8834 38 1 7.6375 -0.9420 4.1294 39 1 6.5347 -0.1590 5.0972 40 1 5.5248 -3.7671 3.2506 41 1 7.1758 -3.1124 3.1338 42 1 7.4788 -3.4411 5.5728 43 1 5.8277 -4.0959 5.6896 44 1 7.8739 -6.4943 7.5933 45 1 1.8933 -2.6776 0.3594 46 1 1.8930 -2.6774 2.1395 47 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424077394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -101.054029 kcal Electronic energy + Delta-G solvation = -23116.189062 eV Core-core repulsion = 19909.972915 eV Total energy + Delta-G solvation = -3206.216147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53093 -39.97770 -36.80627 -35.57484 -34.80862 -33.53953 -31.94078 -31.53221 -28.62516 -27.81230 -26.66159 -25.42126 -23.11786 -22.64465 -21.87846 -21.09963 -19.50706 -18.64297 -18.06218 -17.46671 -16.87279 -16.51938 -16.33177 -15.85354 -15.74451 -15.45554 -15.02157 -14.86229 -14.45397 -14.27969 -13.94625 -13.77970 -13.49168 -13.41763 -13.21726 -12.81680 -12.79464 -12.55368 -12.50105 -12.33613 -12.23243 -12.15343 -11.76992 -11.66274 -11.58683 -11.32754 -11.21066 -11.14888 -11.03667 -10.95015 -10.48901 -10.04084 -9.60678 -8.13759 -6.24085 1.41762 1.43121 1.52276 1.54505 2.19593 2.44793 3.19209 3.56307 3.62585 3.69719 3.81918 3.90731 4.09753 4.12080 4.17392 4.32075 4.33450 4.37837 4.45977 4.54374 4.70941 4.72996 4.77605 4.81418 4.92363 4.97112 5.00969 5.03320 5.10669 5.12373 5.20532 5.24689 5.28771 5.35780 5.41919 5.48131 5.54113 5.57235 5.66771 5.84379 5.98563 6.09756 6.30548 6.46641 6.54689 6.94483 7.17598 7.43991 8.97462 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.003468 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.437722 B = 8071.919816 C = 8544.315889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.128 4.128 7 C 0.150 3.850 8 H 0.063 0.937 9 N -0.712 5.712 10 C 0.489 3.511 11 O -0.583 6.583 12 C 0.085 3.915 13 H 0.109 0.891 14 N -0.819 5.819 15 C -0.080 4.080 16 C 0.040 3.960 17 C -0.544 4.544 18 H 0.055 0.945 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.960 3.040 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.263 1.263 25 C -0.085 4.085 26 H 0.076 0.924 27 C -0.156 4.156 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.410 0.590 38 H 0.344 0.656 39 H 0.346 0.654 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.005 0.995 43 H -0.005 1.005 44 H 0.262 0.738 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.739 11.395 -15.253 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.167 4.167 7 C 0.045 3.955 8 H 0.081 0.919 9 N -0.364 5.364 10 C 0.274 3.726 11 O -0.463 6.463 12 C -0.031 4.031 13 H 0.127 0.873 14 N -0.347 5.347 15 C -0.118 4.118 16 C 0.003 3.997 17 C -0.582 4.582 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.187 1.187 25 C -0.104 4.104 26 H 0.095 0.905 27 C -0.213 4.213 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.248 0.752 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.013 0.987 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.175 11.328 -14.918 24.748 hybrid contribution 0.424 -0.379 -0.349 0.668 sum -15.751 10.949 -15.267 24.516 Atomic orbital electron populations 1.21849 0.93716 1.02559 1.02084 1.21080 0.96553 0.98896 0.93583 0.91625 1.21646 0.94082 1.01529 0.97739 1.21467 0.96735 1.00265 0.96668 1.21907 0.99332 1.00472 0.94974 1.21020 0.94780 0.95780 0.83920 0.91876 1.46245 1.17298 1.43216 1.29662 1.22338 0.81554 0.82054 0.86655 1.90628 1.57307 1.36206 1.62197 1.21638 0.95349 0.94233 0.91905 0.87317 1.58976 1.09588 1.23188 1.42997 1.21369 0.99556 0.91943 0.98972 1.18824 0.95329 0.93067 0.92522 1.21730 1.42448 1.00958 0.93079 0.92664 1.25905 0.96119 1.02680 0.94910 1.70107 1.48767 1.37537 1.00566 0.85535 0.78661 0.79203 0.78152 1.20225 1.20681 1.18743 1.21348 0.91582 0.98097 0.99388 0.90540 1.22043 1.02218 0.94898 1.02162 0.91707 0.91973 0.92566 0.90916 0.90760 0.91199 0.92536 0.90861 0.94631 0.75205 0.84217 0.84085 0.91544 0.94117 0.97672 0.98699 0.92918 0.91698 0.92896 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.84 71.98 0.64 -0.84 16 2 C -0.08 -1.07 2.49 -10.80 -0.03 -1.10 16 3 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.45 4.93 30.59 0.15 -1.30 16 5 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 6 C -0.13 -2.80 5.22 30.60 0.16 -2.64 16 7 C 0.15 3.25 2.15 45.01 0.10 3.34 16 8 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 9 N -0.71 -17.36 5.00 -442.44 -2.21 -19.58 16 10 C 0.49 15.36 7.03 87.66 0.62 15.98 16 11 O -0.58 -21.78 15.91 -3.05 -0.05 -21.83 16 12 C 0.08 2.86 3.15 44.17 0.14 2.99 16 13 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 14 N -0.82 -28.41 8.44 -171.81 -1.45 -29.86 16 15 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 16 C 0.04 2.08 4.86 29.85 0.15 2.23 16 17 C -0.54 -31.10 9.11 25.60 0.23 -30.86 16 18 H 0.06 3.04 7.74 -2.92 -0.02 3.02 16 19 C 0.00 0.10 5.46 84.66 0.46 0.56 16 20 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 21 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.09 -1.32 2.41 -10.77 -0.03 -1.34 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 C -0.16 -2.15 7.98 71.98 0.57 -1.57 16 28 H 0.06 0.61 6.43 -2.39 -0.02 0.59 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.07 0.89 6.43 -2.39 -0.02 0.87 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.52 6.43 -2.39 -0.02 1.50 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.41 8.48 6.87 -92.71 -0.64 7.85 16 38 H 0.34 12.29 8.58 -89.69 -0.77 11.52 16 39 H 0.35 10.33 9.06 -89.70 -0.81 9.52 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 43 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 45 H 0.06 0.92 4.81 -2.39 -0.01 0.91 16 46 H 0.05 0.76 6.51 -2.39 -0.02 0.75 16 47 H 0.08 0.85 6.43 -2.39 -0.02 0.83 16 Total: -1.00 -68.50 358.46 0.84 -67.66 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -1.25 Total: 33.03 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 3.49 Total: -19.42 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -3.38 Total: -106.06 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.50 0.84 -67.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.390 kcal (2) G-P(sol) polarization free energy of solvation -68.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds