Wall clock time and date at job start Tue Mar 31 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47143 * 60.00181 * 5 4 2 7 7 C 1.53000 * 109.46911 * 299.99808 * 6 5 4 8 8 H 1.09002 * 109.47131 * 300.00452 * 7 6 5 9 9 N 1.46500 * 109.47023 * 179.97438 * 7 6 5 10 10 C 1.34774 * 120.00083 * 85.00169 * 9 7 6 11 11 O 1.21287 * 119.99934 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00195 * 179.97438 * 10 9 7 13 13 H 1.09000 * 109.46969 * 40.00155 * 12 10 9 14 14 N 1.46893 * 109.46981 * 160.00185 * 12 10 9 15 15 C 1.53002 * 109.47088 * 280.00360 * 12 10 9 16 16 C 1.52998 * 109.47176 * 175.00187 * 15 12 10 17 17 C 1.50694 * 109.47009 * 179.97438 * 16 15 12 18 18 H 1.07996 * 120.00561 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99764 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00149 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00089 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47043 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47489 * 119.99907 * 21 19 17 24 24 H 1.48501 * 109.47296 * 240.00434 * 21 19 17 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09001 * 109.47362 * 300.00732 * 25 2 1 27 27 C 1.53006 * 109.46997 * 60.00177 * 25 2 1 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.09002 * 109.47103 * 300.00247 * 4 2 1 32 32 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 33 33 H 1.09004 * 109.47261 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00216 * 5 4 2 35 35 H 1.08992 * 109.47060 * 59.99979 * 6 5 4 36 36 H 1.09004 * 109.47059 * 180.02562 * 6 5 4 37 37 H 0.97001 * 119.99661 * 265.00485 * 9 7 6 38 38 H 1.00903 * 111.00187 * 60.00373 * 14 12 10 39 39 H 1.00900 * 111.00193 * 183.95410 * 14 12 10 40 40 H 1.09009 * 109.46737 * 294.99938 * 15 12 10 41 41 H 1.08999 * 109.47384 * 54.99423 * 15 12 10 42 42 H 1.09000 * 109.46515 * 299.99531 * 16 15 12 43 43 H 1.09002 * 109.47298 * 59.99791 * 16 15 12 44 44 H 0.96999 * 120.00272 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.47261 * 59.99820 * 27 25 2 46 46 H 1.09001 * 109.47377 * 180.02562 * 27 25 2 47 47 H 1.09000 * 109.46866 * 300.00212 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5706 -0.7202 1.2490 8 1 3.9335 0.3076 1.2487 9 7 4.0589 -1.4108 2.4452 10 6 5.2808 -1.1250 2.9367 11 8 5.9760 -0.2957 2.3890 12 6 5.7829 -1.8349 4.1675 13 1 5.4944 -2.8852 4.1243 14 7 7.2469 -1.7314 4.2295 15 6 5.1728 -1.1893 5.4133 16 6 5.5828 -1.9861 6.6534 17 6 4.9823 -1.3499 7.8804 18 1 4.3692 -0.4659 7.7853 19 6 5.2148 -1.8970 9.1245 20 7 5.9610 -2.9737 9.2404 21 14 4.4700 -1.1088 10.6454 22 1 3.6771 0.0824 10.2478 23 1 3.5847 -2.0870 11.3269 24 1 5.5554 -0.6951 11.5706 25 6 2.0400 -0.7212 1.2493 26 1 1.6766 -0.2074 2.1393 27 6 1.5300 -2.1637 1.2493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2074 -2.1391 33 1 3.9334 -1.2342 -2.1397 34 1 3.9330 0.3071 -1.2497 35 1 3.7176 -2.4693 0.0000 36 1 5.1706 -1.4408 -0.0002 37 1 3.5027 -2.0738 2.8834 38 1 7.5398 -0.7667 4.2704 39 1 7.6137 -2.2540 5.0108 40 1 5.5326 -0.1644 5.5045 41 1 4.0863 -1.1865 5.3259 42 1 5.2229 -3.0109 6.5620 43 1 6.6693 -1.9889 6.7407 44 1 6.1249 -3.3584 10.1156 45 1 1.8933 -2.6776 0.3594 46 1 1.8930 -2.6774 2.1395 47 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:00 Heat of formation + Delta-G solvation = -80.802804 kcal Electronic energy + Delta-G solvation = -23073.020794 eV Core-core repulsion = 19867.682806 eV Total energy + Delta-G solvation = -3205.337988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41739 -38.79810 -35.48246 -34.40838 -32.86129 -32.74938 -30.66483 -29.86297 -27.70969 -26.36878 -25.84712 -23.94027 -22.20570 -21.56852 -20.43991 -19.78968 -18.64865 -17.34491 -16.27402 -16.21029 -15.57555 -15.18149 -14.81349 -14.48238 -14.38610 -14.16796 -14.07485 -13.67473 -13.35527 -12.97609 -12.87965 -12.76437 -12.42458 -12.20511 -12.13016 -11.78239 -11.69909 -11.53789 -11.31101 -11.07321 -10.93080 -10.90365 -10.67130 -10.60196 -10.31726 -10.27582 -9.98443 -9.85879 -9.25819 -9.15990 -8.86444 -8.44355 -8.15336 -6.08713 -4.11683 3.00357 3.25906 3.32517 3.34083 3.38068 4.39321 4.40884 4.47409 4.57191 4.88106 4.94129 5.04760 5.09088 5.12191 5.22194 5.26978 5.27748 5.32482 5.41094 5.46029 5.51241 5.60962 5.61525 5.69231 5.76710 5.78949 5.81441 5.88023 5.89713 6.02114 6.09991 6.15072 6.19089 6.30438 6.37366 6.53703 6.68025 6.88753 7.47197 7.53052 7.62583 7.77948 7.88653 7.93368 8.31467 8.55077 8.94597 9.53233 11.02219 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.003487 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.923917 B = 8027.952661 C = 8878.276825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.131 4.131 7 C 0.153 3.847 8 H 0.084 0.916 9 N -0.731 5.731 10 C 0.526 3.474 11 O -0.540 6.540 12 C 0.074 3.926 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.094 4.094 26 H 0.076 0.924 27 C -0.155 4.155 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.399 0.601 38 H 0.345 0.655 39 H 0.353 0.647 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.261 0.739 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 2.055 -19.856 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.169 4.169 7 C 0.048 3.952 8 H 0.102 0.898 9 N -0.384 5.384 10 C 0.313 3.687 11 O -0.415 6.415 12 C -0.041 4.041 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.177 4.177 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.113 4.113 26 H 0.095 0.905 27 C -0.212 4.212 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.072 2.175 -20.827 22.821 hybrid contribution -0.842 0.473 2.156 2.362 sum -9.913 2.647 -18.671 21.305 Atomic orbital electron populations 1.21880 0.95051 1.02022 1.01623 1.21085 0.95558 0.99453 0.94190 0.91061 1.21662 0.95589 1.00915 0.97246 1.21483 0.95402 1.00993 0.97551 1.21954 1.01337 0.99663 0.93976 1.20875 0.92777 0.97226 0.84331 0.89802 1.46146 1.18261 1.44230 1.29723 1.20877 0.80624 0.82250 0.84988 1.90623 1.56100 1.33973 1.60844 1.21475 0.90408 1.00125 0.92118 0.88739 1.58743 1.07224 1.18713 1.51571 1.22371 1.00146 1.00184 0.94952 1.19107 0.96783 0.95055 0.90385 1.21223 1.31280 1.12103 0.91492 0.92679 1.25019 0.95206 0.94970 0.99166 1.69960 1.38225 1.21089 1.23930 0.86532 0.79062 0.79370 0.83030 1.19758 1.20948 1.20944 1.21398 0.94032 0.97190 0.98684 0.90516 1.22020 1.01278 0.95832 1.02099 0.92270 0.92793 0.92629 0.91561 0.92113 0.91904 0.91882 0.91567 0.91408 0.76536 0.84178 0.83144 0.92735 0.92603 0.96350 0.96401 0.92945 0.91766 0.92651 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.84 37.16 0.33 -0.71 16 2 C -0.08 -0.67 2.49 -90.63 -0.23 -0.90 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.88 4.93 -26.74 -0.13 -1.01 16 5 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 6 C -0.13 -1.41 5.22 -26.73 -0.14 -1.55 16 7 C 0.15 1.77 2.15 -67.90 -0.15 1.63 16 8 H 0.08 1.16 7.58 -51.93 -0.39 0.76 16 9 N -0.73 -9.59 5.00 -53.78 -0.27 -9.85 16 10 C 0.53 8.80 7.04 -10.99 -0.08 8.73 16 11 O -0.54 -10.64 15.91 5.55 0.09 -10.55 16 12 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 13 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 14 N -0.83 -14.60 8.94 -5.66 -0.05 -14.65 16 15 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 16 C 0.02 0.58 4.74 -27.89 -0.13 0.45 16 17 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C -0.09 -0.87 2.41 -90.59 -0.22 -1.08 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 C -0.16 -1.27 7.98 37.16 0.30 -0.97 16 28 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 4.57 6.87 -40.82 -0.28 4.29 16 38 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 39 H 0.35 6.21 7.55 -39.29 -0.30 5.92 16 40 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 46 H 0.05 0.46 6.51 -51.93 -0.34 0.12 16 47 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -30.69 356.51 -8.71 -39.40 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.20 Total: 10.90 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.36 Total: -11.56 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.42 Total: -49.84 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.69 -8.71 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.408 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds