Wall clock time and date at job start Tue Mar 31 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46792 * 2 1 4 4 C 1.52999 * 109.47321 * 240.00132 * 2 1 3 5 5 C 1.52993 * 109.47024 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46906 * 60.00097 * 5 4 2 7 7 C 1.52999 * 109.47225 * 299.99400 * 6 5 4 8 8 H 1.08992 * 109.47077 * 300.00287 * 7 6 5 9 9 N 1.46498 * 109.46955 * 180.02562 * 7 6 5 10 10 C 1.34779 * 119.99978 * 85.00546 * 9 7 6 11 11 O 1.21279 * 119.99890 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99775 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.47793 * 40.00300 * 12 10 9 14 14 N 1.46901 * 109.46912 * 159.99971 * 12 10 9 15 15 C 1.53006 * 109.47301 * 279.99751 * 12 10 9 16 16 C 1.52999 * 109.46997 * 175.00426 * 15 12 10 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 C 1.53001 * 109.46550 * 60.00641 * 7 6 5 26 26 H 1.08992 * 109.47720 * 60.00040 * 25 7 6 27 27 C 1.53000 * 109.46715 * 180.02562 * 25 7 6 28 28 H 1.09001 * 109.47275 * 299.99982 * 1 2 3 29 29 H 1.08997 * 109.47321 * 60.00151 * 1 2 3 30 30 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46660 * 300.00169 * 4 2 1 32 32 H 1.09007 * 109.46970 * 59.99651 * 4 2 1 33 33 H 1.09001 * 109.46979 * 179.97438 * 5 4 2 34 34 H 1.09000 * 109.47815 * 299.99798 * 5 4 2 35 35 H 1.09011 * 109.46729 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47507 * 60.00158 * 6 5 4 37 37 H 0.97004 * 120.00084 * 264.99946 * 9 7 6 38 38 H 1.00903 * 110.99982 * 296.03961 * 14 12 10 39 39 H 1.00900 * 111.00110 * 60.00140 * 14 12 10 40 40 H 1.09000 * 109.46866 * 55.00213 * 15 12 10 41 41 H 1.09001 * 109.46611 * 295.00330 * 15 12 10 42 42 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 43 43 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 44 44 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.47792 * 59.99432 * 27 25 7 46 46 H 1.09003 * 109.46877 * 180.02562 * 27 25 7 47 47 H 1.09009 * 109.47087 * 299.98923 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0804 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2490 8 1 3.9334 0.3074 1.2488 9 7 4.0597 -1.4102 2.4451 10 6 5.2817 -1.1234 2.9361 11 8 5.9764 -0.2944 2.3874 12 6 5.7847 -1.8328 4.1669 13 1 5.4970 -2.8832 4.1240 14 7 7.2487 -1.7283 4.2282 15 6 5.1747 -1.1873 5.4128 16 6 5.5857 -1.9836 6.6528 17 6 4.9843 -1.3481 7.8799 18 1 4.3741 -0.4621 7.7852 19 6 5.2175 -1.8949 9.1240 20 7 5.9651 -2.9707 9.2398 21 14 4.4714 -1.1077 10.6448 22 1 3.6781 0.0829 10.2474 23 1 3.5875 -2.0872 11.3262 24 1 5.5563 -0.6926 11.5701 25 6 2.0404 -0.7209 1.2493 26 1 1.6775 -1.7486 1.2495 27 6 1.5304 0.0009 2.4982 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2073 -2.1392 33 1 3.9333 -1.2348 -2.1392 34 1 3.9330 0.3072 -1.2497 35 1 5.1705 -1.4415 -0.0007 36 1 3.7175 -2.4694 0.0000 37 1 3.5042 -2.0735 2.8838 38 1 7.6782 -2.2038 3.4488 39 1 7.5410 -0.7634 4.2688 40 1 4.0881 -1.1853 5.3259 41 1 5.5338 -0.1622 5.5036 42 1 6.6723 -1.9856 6.7398 43 1 5.2266 -3.0087 6.5620 44 1 6.1295 -3.3550 10.1151 45 1 1.8934 1.0286 2.4976 46 1 0.4404 0.0000 2.4986 47 1 1.8940 -0.5124 3.3885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424077396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:02 Heat of formation + Delta-G solvation = -84.870111 kcal Electronic energy + Delta-G solvation = -23058.304154 eV Core-core repulsion = 19852.789794 eV Total energy + Delta-G solvation = -3205.514359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35288 -38.78029 -35.21874 -34.50365 -33.28589 -32.77718 -30.77134 -30.05644 -27.49079 -26.33651 -25.62934 -23.73553 -21.70033 -21.28795 -20.50535 -20.24864 -19.45438 -17.13081 -16.37882 -16.08139 -15.47395 -15.06144 -14.87201 -14.62263 -14.60416 -14.38324 -14.05026 -13.78888 -13.38195 -13.03080 -12.75352 -12.34960 -12.28480 -12.06397 -12.00548 -11.94098 -11.73359 -11.50711 -11.26925 -11.08681 -10.90729 -10.72896 -10.63626 -10.55681 -10.50332 -10.29182 -10.03241 -9.78028 -9.35488 -8.98754 -8.93169 -8.32929 -8.17466 -5.93176 -3.95160 2.84009 3.30445 3.34170 3.41813 3.45713 4.35089 4.44535 4.50355 4.53664 4.76713 4.87800 4.92343 5.07851 5.14713 5.18561 5.24857 5.27134 5.32649 5.41103 5.42465 5.52103 5.56650 5.57993 5.70246 5.73472 5.79923 5.84183 5.86565 5.93944 5.98159 6.01015 6.07788 6.19151 6.27643 6.45297 6.58867 6.68277 7.10764 7.42224 7.66895 7.77479 7.82760 7.97652 8.14260 8.39383 8.49573 9.13160 9.68001 11.17767 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.003575 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.994767 B = 7830.623712 C = 8820.270106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.071 0.929 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.128 4.128 7 C 0.149 3.851 8 H 0.084 0.916 9 N -0.725 5.725 10 C 0.484 3.516 11 O -0.555 6.555 12 C 0.078 3.922 13 H 0.096 0.904 14 N -0.807 5.807 15 C -0.094 4.094 16 C 0.031 3.969 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.057 3.943 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.092 4.092 26 H 0.074 0.926 27 C -0.151 4.151 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.401 0.599 38 H 0.333 0.667 39 H 0.347 0.653 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.013 0.987 44 H 0.259 0.741 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 2.734 -21.465 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.167 4.167 7 C 0.044 3.956 8 H 0.102 0.898 9 N -0.377 5.377 10 C 0.270 3.730 11 O -0.433 6.433 12 C -0.038 4.038 13 H 0.114 0.886 14 N -0.335 5.335 15 C -0.132 4.132 16 C -0.006 4.006 17 C -0.559 4.559 18 H 0.070 0.930 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.111 4.111 26 H 0.093 0.907 27 C -0.209 4.209 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.924 2.816 -21.009 22.999 hybrid contribution -0.767 0.545 0.150 0.953 sum -9.691 3.362 -20.859 23.245 Atomic orbital electron populations 1.21880 0.94983 1.01887 1.01815 1.21119 0.95635 0.99664 0.93871 0.91027 1.21630 0.95488 1.00725 0.97435 1.21485 0.95505 1.00972 0.97495 1.21918 1.01182 0.99451 0.94165 1.20949 0.92949 0.97366 0.84347 0.89794 1.46231 1.18320 1.43666 1.29433 1.22702 0.81044 0.82793 0.86456 1.90633 1.56685 1.34431 1.61532 1.21834 0.89763 1.00194 0.92040 0.88580 1.58998 1.04445 1.21124 1.48933 1.21640 0.98208 0.99849 0.93539 1.19022 0.98143 0.94242 0.89234 1.21321 1.30949 1.11801 0.91876 0.92951 1.24995 0.95353 0.95074 0.98949 1.69985 1.38345 1.21285 1.23572 0.86602 0.79028 0.79327 0.83411 1.19859 1.21108 1.21068 1.21416 0.93861 1.00364 0.95453 0.90727 1.21905 1.00980 1.00746 0.97234 0.92155 0.92792 0.92682 0.91904 0.91957 0.91870 0.91849 0.91585 0.91914 0.76464 0.85536 0.83875 0.92891 0.92930 0.94698 0.96900 0.93171 0.92641 0.92196 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.84 37.16 0.33 -0.69 16 2 C -0.08 -0.66 2.25 -90.62 -0.20 -0.86 16 3 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 4 C -0.12 -0.85 5.20 -26.74 -0.14 -0.99 16 5 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 6 C -0.13 -1.31 5.49 -26.73 -0.15 -1.46 16 7 C 0.15 1.66 1.90 -67.93 -0.13 1.53 16 8 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 9 N -0.73 -8.97 4.38 -53.81 -0.24 -9.20 16 10 C 0.48 7.58 7.03 -10.99 -0.08 7.50 16 11 O -0.55 -10.20 15.91 5.56 0.09 -10.11 16 12 C 0.08 1.30 3.15 -68.86 -0.22 1.09 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 14 N -0.81 -13.78 8.44 -5.65 -0.05 -13.83 16 15 C -0.09 -1.90 4.78 -26.73 -0.13 -2.03 16 16 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 17 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.09 -0.82 1.83 -90.62 -0.17 -0.99 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 C -0.15 -1.47 8.68 37.16 0.32 -1.15 16 28 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.40 4.32 8.39 -40.82 -0.34 3.97 16 38 H 0.33 4.95 9.06 -39.29 -0.36 4.60 16 39 H 0.35 6.04 8.58 -39.29 -0.34 5.71 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 47 H 0.06 0.67 7.45 -51.92 -0.39 0.28 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -31.69 367.24 -8.97 -40.66 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.77 Total: 8.51 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -1.26 Total: -12.08 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.45 Total: -49.27 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.69 -8.97 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.211 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds