Wall clock time and date at job start Tue Mar 31 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46792 * 2 1 4 4 C 1.52999 * 109.47321 * 240.00132 * 2 1 3 5 5 C 1.52993 * 109.47024 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46906 * 60.00097 * 5 4 2 7 7 C 1.52999 * 109.47225 * 299.99400 * 6 5 4 8 8 H 1.08992 * 109.47077 * 300.00287 * 7 6 5 9 9 N 1.46498 * 109.46955 * 180.02562 * 7 6 5 10 10 C 1.34779 * 119.99978 * 85.00546 * 9 7 6 11 11 O 1.21279 * 119.99890 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99775 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.47793 * 40.00300 * 12 10 9 14 14 N 1.46901 * 109.46912 * 159.99971 * 12 10 9 15 15 C 1.53006 * 109.47301 * 279.99751 * 12 10 9 16 16 C 1.52999 * 109.46997 * 175.00426 * 15 12 10 17 17 C 1.50706 * 109.46573 * 180.02562 * 16 15 12 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47487 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47233 * 120.00158 * 21 19 17 24 24 H 1.48508 * 109.46883 * 239.99963 * 21 19 17 25 25 C 1.53001 * 109.46550 * 60.00641 * 7 6 5 26 26 H 1.08992 * 109.47720 * 60.00040 * 25 7 6 27 27 C 1.53000 * 109.46715 * 180.02562 * 25 7 6 28 28 H 1.09001 * 109.47275 * 299.99982 * 1 2 3 29 29 H 1.08997 * 109.47321 * 60.00151 * 1 2 3 30 30 H 1.09003 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46660 * 300.00169 * 4 2 1 32 32 H 1.09007 * 109.46970 * 59.99651 * 4 2 1 33 33 H 1.09001 * 109.46979 * 179.97438 * 5 4 2 34 34 H 1.09000 * 109.47815 * 299.99798 * 5 4 2 35 35 H 1.09011 * 109.46729 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47507 * 60.00158 * 6 5 4 37 37 H 0.97004 * 120.00084 * 264.99946 * 9 7 6 38 38 H 1.00903 * 110.99982 * 296.03961 * 14 12 10 39 39 H 1.00900 * 111.00110 * 60.00140 * 14 12 10 40 40 H 1.09000 * 109.46866 * 55.00213 * 15 12 10 41 41 H 1.09001 * 109.46611 * 295.00330 * 15 12 10 42 42 H 1.09000 * 109.47486 * 60.00167 * 16 15 12 43 43 H 1.09001 * 109.47362 * 299.99445 * 16 15 12 44 44 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.47792 * 59.99432 * 27 25 7 46 46 H 1.09003 * 109.46877 * 180.02562 * 27 25 7 47 47 H 1.09009 * 109.47087 * 299.98923 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2495 6 6 4.0804 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2490 8 1 3.9334 0.3074 1.2488 9 7 4.0597 -1.4102 2.4451 10 6 5.2817 -1.1234 2.9361 11 8 5.9764 -0.2944 2.3874 12 6 5.7847 -1.8328 4.1669 13 1 5.4970 -2.8832 4.1240 14 7 7.2487 -1.7283 4.2282 15 6 5.1747 -1.1873 5.4128 16 6 5.5857 -1.9836 6.6528 17 6 4.9843 -1.3481 7.8799 18 1 4.3741 -0.4621 7.7852 19 6 5.2175 -1.8949 9.1240 20 7 5.9651 -2.9707 9.2398 21 14 4.4714 -1.1077 10.6448 22 1 3.6781 0.0829 10.2474 23 1 3.5875 -2.0872 11.3262 24 1 5.5563 -0.6926 11.5701 25 6 2.0404 -0.7209 1.2493 26 1 1.6775 -1.7486 1.2495 27 6 1.5304 0.0009 2.4982 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2073 -2.1392 33 1 3.9333 -1.2348 -2.1392 34 1 3.9330 0.3072 -1.2497 35 1 5.1705 -1.4415 -0.0007 36 1 3.7175 -2.4694 0.0000 37 1 3.5042 -2.0735 2.8838 38 1 7.6782 -2.2038 3.4488 39 1 7.5410 -0.7634 4.2688 40 1 4.0881 -1.1853 5.3259 41 1 5.5338 -0.1622 5.5036 42 1 6.6723 -1.9856 6.7398 43 1 5.2266 -3.0087 6.5620 44 1 6.1295 -3.3550 10.1151 45 1 1.8934 1.0286 2.4976 46 1 0.4404 0.0000 2.4986 47 1 1.8940 -0.5124 3.3885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424077396.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:01 Heat of formation + Delta-G solvation = -105.621658 kcal Electronic energy + Delta-G solvation = -23059.204008 eV Core-core repulsion = 19852.789794 eV Total energy + Delta-G solvation = -3206.414214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42605 -39.78397 -36.79516 -35.55115 -34.80497 -34.00648 -31.93698 -31.61990 -28.49763 -27.71866 -26.52543 -25.34840 -22.90348 -22.12576 -21.77761 -21.40758 -20.47593 -18.66009 -18.01035 -17.45199 -16.88904 -16.45257 -15.94153 -15.68917 -15.50358 -15.44095 -15.26594 -14.83818 -14.74159 -14.28858 -13.82214 -13.76056 -13.51881 -13.42175 -13.02511 -12.82162 -12.76206 -12.63725 -12.50508 -12.44548 -12.23803 -12.01692 -11.79386 -11.77464 -11.65343 -11.37349 -11.31044 -11.17019 -11.04083 -10.93625 -10.49114 -10.01915 -9.59821 -8.13679 -6.23831 1.41380 1.42478 1.53760 1.55929 2.19812 2.44892 3.19381 3.55946 3.60074 3.72382 3.80606 3.92379 4.06274 4.11728 4.16854 4.32772 4.40237 4.42734 4.48531 4.49526 4.67120 4.70999 4.78427 4.83757 4.93683 4.96764 4.97152 5.06210 5.10576 5.16215 5.19937 5.24139 5.26105 5.32769 5.35308 5.51682 5.53512 5.57686 5.61861 5.84912 5.98964 6.10430 6.30844 6.47486 6.55682 6.94964 7.19247 7.44300 8.97740 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.003575 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.994767 B = 7830.623712 C = 8820.270106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.124 4.124 7 C 0.149 3.851 8 H 0.058 0.942 9 N -0.710 5.710 10 C 0.490 3.510 11 O -0.584 6.584 12 C 0.085 3.915 13 H 0.109 0.891 14 N -0.819 5.819 15 C -0.080 4.080 16 C 0.039 3.961 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.930 5.930 21 Si 0.960 3.040 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.281 1.281 25 C -0.084 4.084 26 H 0.088 0.912 27 C -0.151 4.151 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.346 0.654 39 H 0.344 0.656 40 H 0.067 0.933 41 H 0.039 0.961 42 H 0.005 0.995 43 H -0.005 1.005 44 H 0.262 0.738 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.535 2.753 -22.341 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.162 4.162 7 C 0.044 3.956 8 H 0.076 0.924 9 N -0.361 5.361 10 C 0.275 3.725 11 O -0.464 6.464 12 C -0.031 4.031 13 H 0.127 0.873 14 N -0.348 5.348 15 C -0.118 4.118 16 C 0.002 3.998 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.785 3.215 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.207 1.207 25 C -0.103 4.103 26 H 0.106 0.894 27 C -0.208 4.208 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.248 0.752 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.023 0.977 43 H 0.013 0.987 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.093 0.907 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.037 2.823 -21.909 24.693 hybrid contribution -0.104 0.527 0.401 0.670 sum -11.140 3.350 -21.508 24.452 Atomic orbital electron populations 1.21852 0.93803 1.02424 1.02177 1.21109 0.96527 0.99038 0.93466 0.91970 1.21608 0.94261 1.01336 0.97569 1.21478 0.96571 1.00279 0.96901 1.21864 0.99658 1.00230 0.94481 1.21047 0.94558 0.95895 0.84065 0.92391 1.46141 1.17163 1.43270 1.29549 1.22299 0.81800 0.82292 0.86077 1.90627 1.57736 1.35653 1.62370 1.21637 0.89640 1.00646 0.91171 0.87312 1.58978 1.04800 1.21110 1.49892 1.21369 0.99183 0.98358 0.92911 1.18831 0.95946 0.93895 0.91123 1.21756 1.31071 1.12009 0.93189 0.92674 1.25903 0.95743 0.95570 1.02432 1.70112 1.39616 1.22717 1.24557 0.85485 0.78269 0.78683 0.79102 1.18816 1.20210 1.20739 1.21386 0.91833 1.01238 0.95834 0.89353 1.21906 1.01974 0.99907 0.97040 0.92372 0.91940 0.92014 0.90997 0.90700 0.90757 0.92782 0.94012 0.90710 0.75223 0.84118 0.84235 0.91462 0.94167 0.97700 0.98694 0.92938 0.93858 0.90652 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.84 71.98 0.64 -0.98 16 2 C -0.08 -1.13 2.25 -10.79 -0.02 -1.15 16 3 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 4 C -0.11 -1.34 5.20 30.59 0.16 -1.18 16 5 C -0.11 -1.76 5.92 30.59 0.18 -1.58 16 6 C -0.12 -2.40 5.49 30.59 0.17 -2.23 16 7 C 0.15 3.20 1.90 44.99 0.09 3.29 16 8 H 0.06 1.58 7.58 -2.39 -0.02 1.57 16 9 N -0.71 -16.98 4.38 -442.55 -1.94 -18.92 16 10 C 0.49 15.23 7.03 87.66 0.62 15.84 16 11 O -0.58 -21.67 15.91 -3.03 -0.05 -21.72 16 12 C 0.08 2.84 3.15 44.17 0.14 2.98 16 13 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 14 N -0.82 -28.33 8.44 -171.80 -1.45 -29.78 16 15 C -0.08 -3.24 4.78 30.60 0.15 -3.09 16 16 C 0.04 2.05 4.86 29.85 0.15 2.20 16 17 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 18 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 19 C 0.00 0.07 5.46 84.66 0.46 0.53 16 20 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 21 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 C -0.08 -1.36 1.83 -10.79 -0.02 -1.38 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 C -0.15 -2.74 8.68 71.98 0.62 -2.12 16 28 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.41 8.20 8.39 -92.71 -0.78 7.43 16 38 H 0.35 10.31 9.06 -89.69 -0.81 9.49 16 39 H 0.34 12.26 8.58 -89.69 -0.77 11.49 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.00 0.26 7.75 -2.39 -0.02 0.25 16 43 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 45 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 1.13 6.43 -2.39 -0.02 1.12 16 47 H 0.05 1.01 7.45 -2.38 -0.02 1.00 16 Total: -1.00 -68.47 367.24 1.02 -67.45 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -1.41 Total: 32.48 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 3.55 Total: -19.55 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -3.11 Total: -105.26 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.47 1.02 -67.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424077396.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.172 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds