Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47445 * 59.99695 * 5 4 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 4 8 8 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 2 1 10 10 C 1.53002 * 109.47233 * 299.99657 * 8 2 1 11 11 N 1.46494 * 109.47345 * 175.00068 * 10 8 2 12 12 C 1.34775 * 120.00111 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99917 * 179.97438 * 12 11 10 15 15 H 1.08997 * 109.46939 * 40.01028 * 14 12 11 16 16 N 1.46906 * 109.46875 * 160.00694 * 14 12 11 17 17 C 1.53001 * 109.47249 * 280.00481 * 14 12 11 18 18 C 1.53009 * 109.46807 * 175.00285 * 17 14 12 19 19 C 1.50698 * 109.46813 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99975 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99810 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47442 * 90.00071 * 23 21 19 25 25 H 1.48504 * 109.47115 * 210.00084 * 23 21 19 26 26 H 1.48500 * 109.46934 * 329.99644 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 31 31 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 32 32 H 1.09001 * 109.46726 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46589 * 299.99365 * 5 4 2 34 34 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 35 35 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 38 38 H 1.09007 * 109.47055 * 295.00568 * 10 8 2 39 39 H 1.09008 * 109.46873 * 55.00209 * 10 8 2 40 40 H 0.97002 * 119.99750 * 0.02562 * 11 10 8 41 41 H 1.00896 * 111.00299 * 59.99775 * 16 14 12 42 42 H 1.00903 * 110.99826 * 183.95976 * 16 14 12 43 43 H 1.08994 * 109.47036 * 294.99788 * 17 14 12 44 44 H 1.08995 * 109.47134 * 55.00610 * 17 14 12 45 45 H 1.08994 * 109.46687 * 300.00077 * 18 17 14 46 46 H 1.08997 * 109.47399 * 59.99908 * 18 17 14 47 47 H 0.97002 * 119.99603 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -1.7489 1.2492 10 6 1.5300 -0.0001 2.4985 11 7 1.9176 -0.7567 3.6916 12 6 1.5745 -0.3078 4.9152 13 8 0.9445 0.7224 5.0285 14 6 1.9727 -1.0864 6.1424 15 1 2.9849 -1.4705 6.0164 16 7 1.9258 -0.2060 7.3175 17 6 1.0049 -2.2546 6.3415 18 6 1.4804 -3.1169 7.5127 19 6 0.5275 -4.2678 7.7084 20 1 -0.3315 -4.3735 7.0624 21 6 0.7524 -5.1860 8.7121 22 7 -0.0794 -6.1901 8.8833 23 14 2.2378 -5.0027 9.8299 24 1 1.8719 -4.1761 11.0080 25 1 2.6830 -6.3442 10.2855 26 1 3.3395 -4.3423 9.0846 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.9332 -1.2360 -2.1388 33 1 3.9336 0.3058 -1.2488 34 1 3.7158 -2.4709 0.0000 35 1 5.1695 -1.4441 0.0002 36 1 3.9329 -1.2360 2.1394 37 1 3.9332 0.3055 1.2497 38 1 1.9647 0.9985 2.5444 39 1 0.4436 0.0781 2.4549 40 1 2.4217 -1.5804 3.6009 41 1 0.9971 0.1633 7.4558 42 1 2.2504 -0.6871 8.1429 43 1 0.0085 -1.8684 6.5558 44 1 0.9733 -2.8588 5.4349 45 1 2.4769 -3.5030 7.2984 46 1 1.5121 -2.5127 8.4194 47 1 0.0790 -6.8362 9.5892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424099443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -85.190240 kcal Electronic energy + Delta-G solvation = -22665.520226 eV Core-core repulsion = 19459.991985 eV Total energy + Delta-G solvation = -3205.528241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04009 -38.99329 -35.69853 -34.75806 -32.99884 -32.79554 -31.23950 -30.31013 -27.63669 -26.60842 -25.42410 -23.52884 -21.92196 -21.20978 -20.56825 -20.13948 -19.62176 -17.40853 -16.64849 -16.15964 -15.36808 -15.31831 -14.74192 -14.59197 -14.50587 -14.26206 -14.15516 -14.07302 -13.60765 -13.05701 -13.02953 -12.70056 -12.66580 -12.35406 -12.09182 -12.02173 -11.86665 -11.77715 -11.33814 -11.25642 -11.14863 -10.98140 -10.70640 -10.37722 -10.29456 -10.23849 -10.10506 -9.87004 -9.37624 -9.31705 -8.93227 -8.62424 -8.30359 -6.12046 -4.11562 2.92481 3.24894 3.28198 3.33085 3.34408 4.31468 4.37385 4.37817 4.43162 4.77584 4.84351 4.95429 5.04805 5.07948 5.11913 5.18769 5.20123 5.21080 5.26000 5.40384 5.47049 5.50762 5.56612 5.62463 5.65755 5.71315 5.75954 5.80385 5.88624 5.92656 5.96737 6.04270 6.11330 6.14597 6.24642 6.33881 6.55313 6.66380 7.09042 7.22194 7.35016 7.66171 7.68187 7.79158 8.43960 8.46464 8.92014 9.49251 11.01205 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.003285 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.620859 B = 8521.761603 C = 8898.588685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.095 4.095 9 H 0.079 0.921 10 C 0.123 3.877 11 N -0.733 5.733 12 C 0.525 3.475 13 O -0.539 6.539 14 C 0.071 3.929 15 H 0.096 0.904 16 N -0.831 5.831 17 C -0.129 4.129 18 C -0.010 4.010 19 C -0.524 4.524 20 H 0.071 0.929 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.400 0.600 41 H 0.348 0.652 42 H 0.350 0.650 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.011 0.989 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 11.139 -19.569 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.101 4.101 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.113 4.113 9 H 0.097 0.903 10 C -0.001 4.001 11 N -0.386 5.386 12 C 0.311 3.689 13 O -0.415 6.415 14 C -0.044 4.044 15 H 0.113 0.887 16 N -0.363 5.363 17 C -0.169 4.169 18 C -0.048 4.048 19 C -0.562 4.562 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.540 5.540 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.235 0.765 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.036 0.964 46 H 0.029 0.971 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.729 12.199 -19.766 24.479 hybrid contribution 0.238 -1.252 0.975 1.605 sum 7.967 10.948 -18.790 23.161 Atomic orbital electron populations 1.21945 0.95044 1.02182 1.01982 1.21064 0.95616 0.99560 0.93858 0.91003 1.21589 0.95441 1.00803 0.97260 1.21545 0.95721 1.00708 0.97804 1.21539 1.00210 0.99537 0.94483 1.21601 0.94613 1.01127 0.97982 1.21436 0.95824 1.00349 0.93725 0.90289 1.21435 1.00241 0.95174 0.83243 1.46007 1.58886 1.28003 1.05722 1.20763 0.78519 0.85122 0.84455 1.90638 1.39663 1.24467 1.86692 1.21512 1.01129 0.92146 0.89609 0.88651 1.58731 1.32436 1.39037 1.06063 1.22193 0.98121 0.95247 1.01314 1.19573 0.97196 0.95181 0.92838 1.21075 1.10551 1.07934 1.16619 0.91081 1.25047 0.96322 0.94943 0.97154 1.69915 1.36990 1.14222 1.32832 0.86764 0.83668 0.77508 0.81237 1.20211 1.21330 1.18966 0.92482 0.92038 0.92685 0.91849 0.91989 0.92177 0.92086 0.91856 0.92031 0.91698 0.91785 0.91829 0.91260 0.76528 0.83857 0.83570 0.92096 0.91920 0.96360 0.97051 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.85 37.16 0.33 -0.88 16 2 C -0.08 -0.62 2.25 -90.62 -0.20 -0.83 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.77 5.20 -26.73 -0.14 -0.91 16 5 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 6 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 7 C -0.12 -0.91 5.07 -26.75 -0.14 -1.05 16 8 C -0.09 -0.80 1.75 -90.64 -0.16 -0.96 16 9 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 10 C 0.12 1.36 4.85 -4.04 -0.02 1.34 16 11 N -0.73 -9.14 5.28 -60.29 -0.32 -9.46 16 12 C 0.52 8.47 7.08 -10.99 -0.08 8.39 16 13 O -0.54 -10.43 16.25 5.55 0.09 -10.34 16 14 C 0.07 1.15 3.21 -68.86 -0.22 0.93 16 15 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 16 N -0.83 -13.59 8.94 -5.65 -0.05 -13.64 16 17 C -0.13 -2.43 4.78 -26.73 -0.13 -2.56 16 18 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 19 C -0.52 -14.54 9.66 -34.44 -0.33 -14.88 16 20 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 23 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.53 7.18 -51.93 -0.37 0.15 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.84 6.17 -51.92 -0.32 0.52 16 40 H 0.40 4.22 7.65 -40.82 -0.31 3.91 16 41 H 0.35 5.83 8.58 -39.29 -0.34 5.49 16 42 H 0.35 5.50 7.55 -39.29 -0.30 5.20 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 46 H 0.01 0.25 6.30 -51.93 -0.33 -0.08 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -31.79 361.86 -8.93 -40.72 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -8.60 Total: 9.38 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -1.61 Total: -11.90 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.40 Total: -49.73 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.79 -8.93 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.474 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds