Wall clock time and date at job start Tue Mar 31 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47445 * 59.99695 * 5 4 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 4 8 8 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 2 1 10 10 C 1.53002 * 109.47233 * 299.99657 * 8 2 1 11 11 N 1.46494 * 109.47345 * 175.00068 * 10 8 2 12 12 C 1.34775 * 120.00111 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99917 * 179.97438 * 12 11 10 15 15 H 1.08997 * 109.46939 * 40.01028 * 14 12 11 16 16 N 1.46906 * 109.46875 * 160.00694 * 14 12 11 17 17 C 1.53001 * 109.47249 * 280.00481 * 14 12 11 18 18 C 1.53009 * 109.46807 * 175.00285 * 17 14 12 19 19 C 1.50698 * 109.46813 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00045 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99975 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99810 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47442 * 90.00071 * 23 21 19 25 25 H 1.48504 * 109.47115 * 210.00084 * 23 21 19 26 26 H 1.48500 * 109.46934 * 329.99644 * 23 21 19 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 31 31 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 32 32 H 1.09001 * 109.46726 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46589 * 299.99365 * 5 4 2 34 34 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 35 35 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 38 38 H 1.09007 * 109.47055 * 295.00568 * 10 8 2 39 39 H 1.09008 * 109.46873 * 55.00209 * 10 8 2 40 40 H 0.97002 * 119.99750 * 0.02562 * 11 10 8 41 41 H 1.00896 * 111.00299 * 59.99775 * 16 14 12 42 42 H 1.00903 * 110.99826 * 183.95976 * 16 14 12 43 43 H 1.08994 * 109.47036 * 294.99788 * 17 14 12 44 44 H 1.08995 * 109.47134 * 55.00610 * 17 14 12 45 45 H 1.08994 * 109.46687 * 300.00077 * 18 17 14 46 46 H 1.08997 * 109.47399 * 59.99908 * 18 17 14 47 47 H 0.97002 * 119.99603 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -1.7489 1.2492 10 6 1.5300 -0.0001 2.4985 11 7 1.9176 -0.7567 3.6916 12 6 1.5745 -0.3078 4.9152 13 8 0.9445 0.7224 5.0285 14 6 1.9727 -1.0864 6.1424 15 1 2.9849 -1.4705 6.0164 16 7 1.9258 -0.2060 7.3175 17 6 1.0049 -2.2546 6.3415 18 6 1.4804 -3.1169 7.5127 19 6 0.5275 -4.2678 7.7084 20 1 -0.3315 -4.3735 7.0624 21 6 0.7524 -5.1860 8.7121 22 7 -0.0794 -6.1901 8.8833 23 14 2.2378 -5.0027 9.8299 24 1 1.8719 -4.1761 11.0080 25 1 2.6830 -6.3442 10.2855 26 1 3.3395 -4.3423 9.0846 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.9332 -1.2360 -2.1388 33 1 3.9336 0.3058 -1.2488 34 1 3.7158 -2.4709 0.0000 35 1 5.1695 -1.4441 0.0002 36 1 3.9329 -1.2360 2.1394 37 1 3.9332 0.3055 1.2497 38 1 1.9647 0.9985 2.5444 39 1 0.4436 0.0781 2.4549 40 1 2.4217 -1.5804 3.6009 41 1 0.9971 0.1633 7.4558 42 1 2.2504 -0.6871 8.1429 43 1 0.0085 -1.8684 6.5558 44 1 0.9733 -2.8588 5.4349 45 1 2.4769 -3.5030 7.2984 46 1 1.5121 -2.5127 8.4194 47 1 0.0790 -6.8362 9.5892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424099443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:55 Heat of formation + Delta-G solvation = -106.868099 kcal Electronic energy + Delta-G solvation = -22666.460248 eV Core-core repulsion = 19459.991985 eV Total energy + Delta-G solvation = -3206.468264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10772 -39.87932 -37.16512 -35.83039 -34.80868 -33.62703 -32.07875 -32.02785 -28.81462 -27.63424 -26.46784 -24.96146 -22.73272 -22.09550 -21.90951 -21.19086 -20.52291 -19.11232 -18.30153 -17.24385 -16.43987 -16.30026 -16.13314 -15.69344 -15.56097 -15.48888 -15.13201 -15.02431 -14.72640 -14.63745 -14.28300 -14.06407 -13.63048 -13.48283 -13.08566 -12.99280 -12.79455 -12.68307 -12.65443 -12.38914 -12.07950 -11.91498 -11.91078 -11.74069 -11.66624 -11.40957 -11.31411 -10.99716 -10.88615 -10.77836 -10.69622 -10.04517 -9.65372 -8.30085 -6.35728 1.38812 1.40011 1.51590 1.63059 2.17938 2.36292 3.05602 3.63482 3.71958 3.73264 3.78006 3.85738 4.09354 4.13081 4.19428 4.26643 4.35847 4.46987 4.53296 4.58255 4.59443 4.62376 4.70822 4.72757 4.85628 4.87390 4.94665 4.95449 5.07858 5.13030 5.21591 5.26997 5.34250 5.35650 5.37120 5.42770 5.46599 5.47246 5.51748 5.62540 5.64617 6.06545 6.24991 6.49002 6.55754 6.72902 7.25604 7.29183 8.86769 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.003285 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.620859 B = 8521.761603 C = 8898.588685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.114 4.114 8 C -0.085 4.085 9 H 0.078 0.922 10 C 0.124 3.876 11 N -0.717 5.717 12 C 0.522 3.478 13 O -0.575 6.575 14 C 0.080 3.920 15 H 0.120 0.880 16 N -0.831 5.831 17 C -0.118 4.118 18 C -0.006 4.006 19 C -0.536 4.536 20 H 0.026 0.974 21 C 0.002 3.998 22 N -0.953 5.953 23 Si 0.955 3.045 24 H -0.268 1.268 25 H -0.288 1.288 26 H -0.236 1.236 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.412 0.588 41 H 0.344 0.656 42 H 0.354 0.646 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.023 0.977 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 11.842 -20.188 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.104 4.104 9 H 0.096 0.904 10 C 0.000 4.000 11 N -0.370 5.370 12 C 0.309 3.691 13 O -0.454 6.454 14 C -0.035 4.035 15 H 0.137 0.863 16 N -0.362 5.362 17 C -0.158 4.158 18 C -0.043 4.043 19 C -0.574 4.574 20 H 0.044 0.956 21 C -0.195 4.195 22 N -0.594 5.594 23 Si 0.777 3.223 24 H -0.193 1.193 25 H -0.214 1.214 26 H -0.159 1.159 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.249 0.751 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.051 0.949 46 H 0.041 0.959 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.272 12.899 -20.426 26.251 hybrid contribution -0.649 -1.487 1.089 1.954 sum 9.622 11.412 -19.337 24.428 Atomic orbital electron populations 1.21936 0.95341 1.01955 1.01870 1.21052 0.95332 0.99613 0.93858 0.90955 1.21567 0.95695 1.00605 0.96942 1.21545 0.95391 1.00849 0.97889 1.21529 1.00565 0.99350 0.94172 1.21591 0.93850 1.01197 0.98548 1.21371 0.96376 0.99929 0.92736 0.90369 1.21510 0.99637 0.95174 0.83658 1.45931 1.57758 1.28137 1.05170 1.20777 0.78241 0.84724 0.85375 1.90626 1.41403 1.26128 1.87257 1.21447 1.01331 0.90904 0.89793 0.86263 1.58751 1.32223 1.38914 1.06355 1.22015 0.97813 0.95866 1.00091 1.19500 0.96330 0.93811 0.94669 1.21451 1.10268 1.09885 1.15746 0.95590 1.26091 0.99927 0.94374 0.99083 1.70085 1.39606 1.15611 1.34079 0.85597 0.79904 0.77734 0.79031 1.19342 1.21374 1.15906 0.92753 0.93246 0.91721 0.92037 0.91206 0.91388 0.91945 0.91961 0.91454 0.91734 0.91951 0.92399 0.92403 0.75145 0.84240 0.83032 0.94118 0.91730 0.94907 0.95866 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.85 71.98 0.64 -1.66 16 2 C -0.08 -1.11 2.25 -10.79 -0.02 -1.13 16 3 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.31 5.20 30.60 0.16 -1.15 16 5 C -0.12 -1.32 5.92 30.60 0.18 -1.14 16 6 C -0.12 -1.44 5.92 30.59 0.18 -1.25 16 7 C -0.11 -1.60 5.07 30.58 0.16 -1.44 16 8 C -0.09 -1.33 1.75 -10.81 -0.02 -1.35 16 9 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 10 C 0.12 2.64 4.85 86.38 0.42 3.06 16 11 N -0.72 -16.94 5.28 -463.05 -2.45 -19.38 16 12 C 0.52 16.26 7.08 87.66 0.62 16.88 16 13 O -0.58 -22.06 16.25 -3.04 -0.05 -22.11 16 14 C 0.08 2.44 3.21 44.17 0.14 2.58 16 15 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 16 N -0.83 -25.60 8.94 -171.79 -1.54 -27.14 16 17 C -0.12 -4.34 4.78 30.60 0.15 -4.19 16 18 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 19 C -0.54 -30.07 9.66 25.60 0.25 -29.82 16 20 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 21 C 0.00 0.11 5.47 84.66 0.46 0.57 16 22 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 23 Si 0.95 42.46 27.47 68.60 1.88 44.34 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.85 6.32 -2.39 -0.02 0.84 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.90 7.18 -2.39 -0.02 0.89 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.06 1.40 6.17 -2.38 -0.01 1.38 16 40 H 0.41 7.84 7.65 -92.71 -0.71 7.13 16 41 H 0.34 11.20 8.58 -89.70 -0.77 10.43 16 42 H 0.35 10.21 7.55 -89.69 -0.68 9.53 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 46 H 0.02 0.95 6.30 -2.39 -0.02 0.94 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.31 361.86 0.32 -68.99 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -1.26 Total: 34.48 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 3.42 Total: -20.18 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -3.68 Total: -105.53 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.11 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Total: -69.31 0.32 -68.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.875 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds