Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47062 * 2 1 4 4 C 1.53004 * 109.46803 * 239.99879 * 2 1 3 5 5 C 1.52999 * 109.46914 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47141 * 59.99999 * 5 4 2 7 7 C 1.53004 * 109.47217 * 299.99815 * 6 5 4 8 8 C 1.52999 * 109.46914 * 60.00046 * 7 6 5 9 9 H 1.09006 * 109.47197 * 59.99907 * 8 7 6 10 10 C 1.52997 * 109.47131 * 179.97438 * 8 7 6 11 11 N 1.46499 * 109.47555 * 295.00471 * 10 8 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 H 1.09003 * 109.46824 * 319.71785 * 14 12 11 16 16 N 1.46900 * 109.46704 * 199.72391 * 14 12 11 17 17 C 1.53002 * 109.47121 * 79.72099 * 14 12 11 18 18 C 1.52996 * 109.46946 * 185.00076 * 17 14 12 19 19 C 1.50694 * 109.47332 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00223 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99806 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00191 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47250 * 89.99324 * 23 21 19 25 25 H 1.48496 * 109.47102 * 209.99702 * 23 21 19 26 26 H 1.48501 * 109.46801 * 329.99457 * 23 21 19 27 27 H 1.09001 * 109.46617 * 299.99946 * 1 2 3 28 28 H 1.08998 * 109.46802 * 59.99888 * 1 2 3 29 29 H 1.08998 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47158 * 300.00253 * 4 2 1 31 31 H 1.09003 * 109.46777 * 59.99986 * 4 2 1 32 32 H 1.09001 * 109.47203 * 180.02562 * 5 4 2 33 33 H 1.09006 * 109.47197 * 300.00093 * 5 4 2 34 34 H 1.08998 * 109.47183 * 60.00264 * 6 5 4 35 35 H 1.09006 * 109.46848 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47411 * 300.00309 * 7 6 5 37 37 H 1.09003 * 109.46792 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47382 * 175.00033 * 10 8 7 39 39 H 1.09002 * 109.47216 * 55.00470 * 10 8 7 40 40 H 0.97000 * 119.99484 * 359.97438 * 11 10 8 41 41 H 1.00898 * 110.99811 * 299.99578 * 16 14 12 42 42 H 1.00898 * 111.00326 * 63.95847 * 16 14 12 43 43 H 1.08996 * 109.46933 * 304.99916 * 17 14 12 44 44 H 1.08998 * 109.47170 * 65.00270 * 17 14 12 45 45 H 1.09000 * 109.47119 * 300.00211 * 18 17 14 46 46 H 1.09002 * 109.47419 * 59.99484 * 18 17 14 47 47 H 0.97006 * 119.99834 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7219 -1.2490 6 6 4.0795 -1.4435 0.0003 7 6 3.5695 -0.7222 1.2495 8 6 2.0396 -0.7216 1.2492 9 1 1.6758 -1.7492 1.2490 10 6 1.5296 -0.0009 2.4988 11 7 1.9167 -0.7582 3.6916 12 6 1.5726 -0.3103 4.9153 13 8 0.9429 0.7200 5.0290 14 6 1.9762 -1.0861 6.1426 15 1 1.8595 -2.1531 5.9526 16 7 1.1230 -0.6938 7.2723 17 6 3.4381 -0.7847 6.4787 18 6 3.8845 -1.6649 7.6478 19 6 5.3246 -1.3685 7.9784 20 1 5.8670 -0.6262 7.4117 21 6 5.9493 -2.0442 9.0051 22 7 7.2063 -1.7858 9.2933 23 14 5.0110 -3.3276 9.9859 24 1 5.1733 -4.6570 9.3444 25 1 5.5429 -3.3782 11.3714 26 1 3.5707 -2.9677 10.0215 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.9333 -1.2353 -2.1392 33 1 3.9337 0.3057 -1.2488 34 1 3.7158 -2.4710 0.0000 35 1 5.1695 -1.4443 0.0002 36 1 3.9332 0.3054 1.2498 37 1 3.9322 -1.2366 2.1395 38 1 0.4433 0.0778 2.4550 39 1 1.9645 0.9975 2.5453 40 1 2.4200 -1.5824 3.6006 41 1 1.2133 0.2918 7.4684 42 1 0.1600 -0.9418 7.1014 43 1 4.0611 -0.9925 5.6088 44 1 3.5384 0.2649 6.7552 45 1 3.2614 -1.4571 8.5176 46 1 3.7841 -2.7145 7.3714 47 1 7.6457 -2.2610 10.0159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424099444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -85.179424 kcal Electronic energy + Delta-G solvation = -22708.207591 eV Core-core repulsion = 19502.679819 eV Total energy + Delta-G solvation = -3205.527772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13400 -39.08236 -35.44635 -34.83898 -33.02090 -32.74110 -31.26604 -30.46772 -27.58934 -26.60007 -25.44067 -23.36828 -21.90061 -21.22835 -20.51331 -20.12869 -19.64227 -17.22760 -16.64123 -16.26489 -15.61581 -15.24037 -15.19872 -14.73119 -14.57115 -14.24602 -14.10315 -13.88571 -13.55866 -13.27064 -12.89171 -12.59454 -12.43232 -12.29674 -12.14445 -12.06200 -11.81719 -11.63086 -11.28935 -11.16500 -11.01043 -10.85667 -10.72261 -10.41409 -10.28434 -10.25517 -9.90507 -9.76292 -9.55992 -9.09617 -9.02299 -8.49225 -8.37008 -5.98480 -3.96007 2.75565 3.27363 3.36693 3.44615 3.52911 4.29088 4.36031 4.41628 4.52526 4.74507 4.80127 4.84582 4.96405 5.06735 5.09692 5.17235 5.18599 5.23234 5.34984 5.36255 5.41737 5.49118 5.52098 5.62361 5.66827 5.70620 5.72342 5.79221 5.89365 5.91833 5.96117 6.04244 6.07124 6.22542 6.31072 6.45948 6.50507 6.89090 7.27783 7.37828 7.55268 7.62082 7.68918 7.87942 8.30172 8.59198 9.06328 9.64623 11.15020 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.003476 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.482918 B = 8052.267652 C = 9039.613814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.093 4.093 9 H 0.076 0.924 10 C 0.119 3.881 11 N -0.729 5.729 12 C 0.483 3.517 13 O -0.554 6.554 14 C 0.074 3.926 15 H 0.097 0.903 16 N -0.811 5.811 17 C -0.086 4.086 18 C -0.004 4.004 19 C -0.521 4.521 20 H 0.069 0.931 21 C 0.065 3.935 22 N -0.907 5.907 23 Si 0.879 3.121 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.260 1.260 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.402 0.598 41 H 0.349 0.651 42 H 0.335 0.665 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.034 0.966 46 H 0.008 0.992 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 0.247 -21.796 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.112 4.112 9 H 0.095 0.905 10 C -0.005 4.005 11 N -0.381 5.381 12 C 0.268 3.732 13 O -0.432 6.432 14 C -0.041 4.041 15 H 0.115 0.885 16 N -0.339 5.339 17 C -0.125 4.125 18 C -0.042 4.042 19 C -0.559 4.559 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.546 5.546 23 Si 0.707 3.293 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.184 1.184 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.164 0.836 42 H 0.146 0.854 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.026 0.974 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.503 0.447 -21.139 24.564 hybrid contribution -0.529 -0.436 -0.285 0.743 sum -13.032 0.011 -21.424 25.077 Atomic orbital electron populations 1.21938 0.95203 1.01948 1.01937 1.21078 0.95453 0.99726 0.93953 0.90912 1.21578 0.95598 1.00626 0.97187 1.21551 0.95556 1.00863 0.97874 1.21530 1.00490 0.99323 0.94365 1.21630 0.94301 1.01428 0.98192 1.21433 0.96086 1.00015 0.93631 0.90541 1.21470 0.99934 0.95517 0.83548 1.46178 1.58096 1.27965 1.05896 1.22597 0.78368 0.86299 0.85934 1.90649 1.40845 1.24757 1.86954 1.21855 0.97456 0.99048 0.85780 0.88531 1.59030 1.11588 1.24966 1.38341 1.21456 0.88857 1.01620 1.00552 1.19486 0.96810 0.93908 0.93979 1.21186 0.95050 1.22816 1.16840 0.91330 1.25018 0.94703 0.96905 0.96909 1.69930 1.11128 1.42720 1.30842 0.86769 0.81318 0.81952 0.79283 1.20523 1.21624 1.18395 0.92165 0.92662 0.92651 0.91975 0.92014 0.92149 0.92002 0.91990 0.91798 0.91626 0.91417 0.91445 0.91761 0.76355 0.83634 0.85378 0.92254 0.92249 0.94788 0.97375 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.85 37.16 0.33 -0.75 16 2 C -0.08 -0.61 2.25 -90.61 -0.20 -0.82 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -0.75 5.20 -26.73 -0.14 -0.89 16 5 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 6 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 7 C -0.12 -1.02 5.08 -26.73 -0.14 -1.16 16 8 C -0.09 -0.76 1.75 -90.62 -0.16 -0.92 16 9 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 10 C 0.12 1.27 4.85 -4.04 -0.02 1.25 16 11 N -0.73 -8.70 5.28 -60.29 -0.32 -9.01 16 12 C 0.48 7.34 7.07 -10.98 -0.08 7.26 16 13 O -0.55 -10.06 16.25 5.55 0.09 -9.97 16 14 C 0.07 1.18 3.15 -68.86 -0.22 0.96 16 15 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 16 N -0.81 -12.91 8.44 -5.65 -0.05 -12.96 16 17 C -0.09 -1.67 4.78 -26.73 -0.13 -1.80 16 18 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 19 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 20 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 22 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 23 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 H 0.06 0.47 6.32 -51.93 -0.33 0.14 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.63 7.18 -51.93 -0.37 0.26 16 38 H 0.07 0.75 6.17 -51.93 -0.32 0.43 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 4.08 7.65 -40.82 -0.31 3.77 16 41 H 0.35 5.72 8.58 -39.29 -0.34 5.38 16 42 H 0.33 4.58 9.06 -39.29 -0.36 4.23 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.03 0.84 6.81 -51.93 -0.35 0.48 16 46 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 363.82 15.07 5.48 5.48 Total: -1.00 -32.66 363.82 -9.00 -41.65 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.70 Total: 7.53 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.61 Total: -12.56 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.41 Total: -49.47 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.66 -9.00 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.525 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds